Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00303 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47850 * 119.99774 * 179.97438 * 14 13 12 17 17 C 1.39597 * 120.14426 * 359.72852 * 16 14 13 18 18 C 1.37934 * 119.85151 * 179.78667 * 17 16 14 19 19 C 1.38386 * 120.14385 * 0.48949 * 18 17 16 20 20 C 1.38341 * 120.29363 * 359.73778 * 19 18 17 21 21 C 1.50693 * 119.92398 * 180.02562 * 20 19 18 22 22 S 1.81397 * 109.47276 * 270.02246 * 21 20 19 23 23 C 1.81405 * 101.92347 * 180.02562 * 22 21 20 24 24 O 1.42098 * 108.57929 * 294.49245 * 22 21 20 25 25 O 1.42103 * 108.57734 * 65.51886 * 22 21 20 26 26 C 1.37976 * 120.14123 * 0.02562 * 20 19 18 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 37 37 H 1.07995 * 120.07066 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.92910 * 180.20795 * 18 17 16 39 39 H 1.08000 * 119.85317 * 179.76723 * 19 18 17 40 40 H 1.08996 * 109.47888 * 30.02798 * 21 20 19 41 41 H 1.09003 * 109.46999 * 150.02481 * 21 20 19 42 42 H 1.08999 * 109.46587 * 60.00125 * 23 22 21 43 43 H 1.09003 * 109.46871 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46887 * 300.00348 * 23 22 21 45 45 H 1.08003 * 120.06657 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0075 10 1 1.8259 -0.4209 -5.2204 11 1 3.8063 -1.1212 -4.0080 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2062 4.8767 17 6 0.5871 1.3454 4.7520 18 6 0.1274 1.9887 5.8822 19 6 0.4632 1.5131 7.1377 20 6 1.2568 0.3875 7.2682 21 6 1.6169 -0.1235 8.6393 22 16 3.1588 0.6574 9.1900 23 6 3.3942 -0.0905 10.8259 24 8 4.2130 0.2269 8.3400 25 8 2.9267 2.0493 9.3572 26 6 1.7192 -0.2682 6.1457 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 0.9942 0.7583 2.3564 37 1 0.3278 1.7198 3.7728 38 1 -0.4922 2.8681 5.7872 39 1 0.1038 2.0226 8.0195 40 1 0.8170 0.1185 9.3391 41 1 1.7509 -1.2046 8.6006 42 1 3.4760 -1.1724 10.7223 43 1 4.3058 0.3018 11.2769 44 1 2.5421 0.1503 11.4615 45 1 2.3390 -1.1466 6.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361496081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -110.540028 kcal Electronic energy + Delta-G solvation = -26927.018193 eV Core-core repulsion = 23035.775152 eV Total energy + Delta-G solvation = -3891.243041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35434 -39.70309 -38.10786 -37.97668 -36.99455 -35.22516 -34.15799 -32.77657 -32.03942 -30.43953 -28.43456 -27.58632 -27.50100 -26.94422 -24.53240 -23.03682 -21.43619 -20.67075 -19.84478 -18.98154 -17.87930 -17.58492 -17.28572 -17.11328 -16.98422 -16.77162 -16.48120 -16.33894 -15.83248 -15.51091 -14.86725 -14.71088 -14.68932 -14.39997 -14.03662 -13.88793 -13.86616 -13.71225 -13.56767 -13.21076 -13.11314 -13.08146 -13.00118 -12.73452 -12.69394 -12.63593 -12.29970 -12.26629 -12.13910 -12.11960 -11.66377 -11.51177 -11.34767 -10.99333 -10.72563 -10.41113 -10.18960 -9.92654 -9.78255 -8.03046 -6.18740 -1.03924 -0.20747 0.29227 1.43990 1.44889 1.51685 1.78563 1.89803 2.19205 2.47612 2.69689 2.83022 3.11147 3.20432 3.42343 3.63124 3.80677 4.03368 4.07783 4.13463 4.21453 4.31466 4.36579 4.47276 4.49353 4.54287 4.67434 4.78939 4.94612 4.95300 5.00898 5.02596 5.08897 5.16815 5.25342 5.28381 5.31582 5.32987 5.52375 5.65073 5.66262 5.80914 6.12875 6.18811 6.41807 6.56364 6.84264 7.17964 7.48632 8.95908 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002208 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.462405 B =12676.677207 C =13147.567538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.543 3.457 15 O -0.588 6.588 16 C -0.152 4.152 17 C -0.082 4.082 18 C -0.120 4.120 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.554 4.554 22 S 2.400 3.600 23 C -0.632 4.632 24 O -0.993 6.993 25 O -0.977 6.977 26 C -0.067 4.067 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.409 0.591 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.190 0.810 41 H 0.167 0.833 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.163 0.837 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 2.479 29.535 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.332 3.668 15 O -0.470 6.470 16 C -0.155 4.155 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.682 4.682 22 S 2.589 3.411 23 C -0.785 4.785 24 O -0.990 6.990 25 O -0.974 6.974 26 C -0.087 4.087 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.247 0.753 37 H 0.161 0.839 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.207 0.793 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.153 0.847 44 H 0.182 0.818 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.940 2.541 28.983 29.360 hybrid contribution 0.033 -0.953 -1.206 1.538 sum -3.906 1.588 27.777 28.095 Atomic orbital electron populations 1.21679 0.96897 0.98807 1.00502 1.18365 0.93433 0.93000 0.90119 1.21697 0.97952 0.97886 1.00494 1.21217 1.31867 1.12240 0.91518 0.93768 1.25452 0.95126 0.95625 1.00946 1.69891 1.36867 1.23173 1.23729 0.85804 0.78561 0.78824 0.79532 1.20235 1.20690 1.20388 1.21362 0.97117 0.95271 0.84014 1.46045 1.52422 1.31816 1.05110 1.18831 0.79856 0.83794 0.84310 1.90707 1.40385 1.28420 1.87527 1.19943 1.03641 0.99117 0.92817 1.21705 0.94354 0.92843 1.01210 1.21551 1.00161 1.00946 0.91135 1.21844 0.94326 0.93840 0.99736 1.19174 1.01578 0.97709 0.92772 1.29322 1.22022 1.14884 1.02005 1.08190 0.77311 0.76260 0.79355 1.30078 1.13851 1.15312 1.19288 1.93575 1.54578 1.83829 1.67061 1.93542 1.86017 1.30845 1.87023 1.21323 0.96884 0.99338 0.91204 0.94466 0.91604 0.96193 0.96405 0.91548 0.94527 0.92942 0.93964 0.94309 0.75279 0.83939 0.81333 0.81231 0.79272 0.81507 0.82825 0.84678 0.81834 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 3 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 4 C -0.53 -28.47 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 8 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.15 6.51 4.50 86.38 0.39 6.90 16 13 N -0.70 -26.23 4.91 -465.96 -2.29 -28.52 16 14 C 0.54 20.84 7.77 86.79 0.67 21.52 16 15 O -0.59 -27.06 16.35 -3.88 -0.06 -27.13 16 16 C -0.15 -4.58 5.87 -20.09 -0.12 -4.69 16 17 C -0.08 -1.88 9.54 22.53 0.21 -1.66 16 18 C -0.12 -2.02 10.03 22.23 0.22 -1.80 16 19 C -0.08 -1.22 9.69 22.33 0.22 -1.01 16 20 C -0.11 -2.06 5.13 -19.90 -0.10 -2.17 16 21 C -0.55 -4.56 5.93 71.23 0.42 -4.14 16 22 S 2.40 32.19 5.34 -56.49 -0.30 31.89 16 23 C -0.63 -1.23 10.62 113.37 1.20 -0.02 16 24 O -0.99 -25.49 18.10 -127.37 -2.30 -27.80 16 25 O -0.98 -20.01 18.10 -127.37 -2.31 -22.31 16 26 C -0.07 -1.82 9.24 22.53 0.21 -1.62 16 27 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 3.31 6.07 -2.39 -0.01 3.30 16 32 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 13.08 4.20 -92.71 -0.39 12.69 16 37 H 0.14 2.84 6.41 -2.91 -0.02 2.82 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.19 -0.27 8.08 -2.39 -0.02 -0.29 16 41 H 0.17 0.63 8.08 -2.39 -0.02 0.61 16 42 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.16 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.13 3.70 7.65 -2.91 -0.02 3.68 16 Total: -1.00 -83.71 380.61 0.69 -83.02 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.61 Total: 16.02 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 5.11 Total: -22.41 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.09 Total: -76.37 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: -4.67 Total: -77.23 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 32.19 SS G_CDS: -0.30 Total: 31.89 kcal Total: -83.71 0.69 -83.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361496081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.517 kcal (2) G-P(sol) polarization free energy of solvation -83.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds