Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.53005 * 109.47440 * 119.99766 * 2 1 3 5 5 C 1.52990 * 109.47350 * 185.00265 * 4 2 1 6 6 N 1.46498 * 109.47234 * 180.02562 * 5 4 2 7 7 C 1.34782 * 120.00041 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99859 * 359.97438 * 7 6 5 9 9 C 1.47891 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.39923 * 120.02411 * 359.72358 * 9 7 6 11 11 C 1.38333 * 120.35611 * 179.74075 * 10 9 7 12 12 C 1.37755 * 120.40861 * 0.56181 * 11 10 9 13 13 C 1.40744 * 120.04191 * 359.69635 * 12 11 10 14 14 C 1.41438 * 120.17967 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99591 * 24.43812 * 14 13 12 16 16 C 1.39935 * 120.00120 * 204.44034 * 14 13 12 17 17 N 1.30820 * 120.00060 * 17.87513 * 16 14 13 18 18 Si 1.86798 * 119.99804 * 197.88047 * 16 14 13 19 19 H 1.48502 * 109.47323 * 59.99884 * 18 16 14 20 20 H 1.48496 * 109.47340 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46963 * 299.99731 * 18 16 14 22 22 C 1.38991 * 120.02263 * 179.97438 * 9 7 6 23 23 S 1.81400 * 109.47275 * 240.00220 * 2 1 3 24 24 C 1.81393 * 101.92194 * 59.99583 * 23 2 1 25 25 O 1.42104 * 108.57877 * 174.48903 * 23 2 1 26 26 O 1.42103 * 108.57415 * 305.50617 * 23 2 1 27 27 H 1.08997 * 109.46964 * 299.99602 * 1 2 3 28 28 H 1.08997 * 109.47120 * 59.99901 * 1 2 3 29 29 H 1.09004 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47701 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47201 * 300.00049 * 3 2 1 32 32 H 1.09000 * 109.47406 * 59.99810 * 3 2 1 33 33 H 1.09004 * 109.46815 * 64.99997 * 4 2 1 34 34 H 1.09006 * 109.46845 * 305.00621 * 4 2 1 35 35 H 1.09006 * 109.47437 * 299.99993 * 5 4 2 36 36 H 1.09004 * 109.47381 * 60.00078 * 5 4 2 37 37 H 0.97000 * 120.00134 * 0.02562 * 6 5 4 38 38 H 1.08001 * 119.81786 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.78886 * 180.28122 * 11 10 9 40 40 H 1.07995 * 119.97665 * 179.72109 * 12 11 10 41 41 H 0.97000 * 119.99984 * 180.02562 * 17 16 14 42 42 H 1.07997 * 120.20608 * 359.95800 * 22 9 7 43 43 H 1.09002 * 109.46962 * 60.00278 * 24 23 2 44 44 H 1.08997 * 109.47164 * 179.97438 * 24 23 2 45 45 H 1.09000 * 109.47104 * 300.00263 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3742 -1.3405 2.7747 8 8 6.1603 -0.8002 2.0213 9 6 5.8672 -2.0377 3.9822 10 6 4.9622 -2.6548 4.8528 11 6 5.4162 -3.3134 5.9815 12 6 6.7630 -3.3595 6.2675 13 6 7.6878 -2.7399 5.4063 14 6 9.0712 -2.7858 5.6968 15 1 9.4680 -3.5815 6.3099 16 6 9.9258 -1.8004 5.1900 17 7 9.4342 -0.6683 4.7563 18 14 11.7684 -2.1017 5.1325 19 1 12.0497 -3.2898 4.2872 20 1 12.4466 -0.9130 4.5560 21 1 12.2738 -2.3419 6.5080 22 6 7.2294 -2.0758 4.2558 23 16 2.1347 -0.8551 -1.4811 24 6 1.4229 0.1515 -2.8118 25 8 3.5497 -0.7330 -1.5284 26 8 1.5480 -2.1485 -1.5284 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8899 33 1 1.7517 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 3.9995 -1.0727 0.4260 36 1 3.8532 0.4371 1.3574 37 1 3.4260 -1.7364 3.1102 38 1 3.9039 -2.6207 4.6401 39 1 4.7100 -3.7905 6.6448 40 1 7.1093 -3.8717 7.1529 41 1 10.0265 0.0146 4.4047 42 1 7.9312 -1.5979 3.5884 43 1 1.7893 1.1747 -2.7291 44 1 1.7159 -0.2621 -3.7767 45 1 0.3360 0.1470 -2.7290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361521745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -93.997523 kcal Electronic energy + Delta-G solvation = -27236.611694 eV Core-core repulsion = 23346.085990 eV Total energy + Delta-G solvation = -3890.525704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.27800 -37.77017 -37.26388 -36.82704 -36.25593 -34.13574 -33.64172 -30.84336 -29.97811 -29.40435 -28.57560 -27.87527 -25.31515 -24.00951 -22.05565 -21.65679 -20.86388 -19.53161 -18.72366 -17.75621 -17.10678 -16.53969 -16.29280 -16.03759 -15.60115 -15.10117 -14.96847 -14.65198 -14.57105 -14.10362 -13.77268 -13.64336 -13.46140 -13.35596 -13.22581 -13.10898 -12.74753 -12.58232 -12.44736 -12.35492 -12.33477 -12.08688 -11.88305 -11.62523 -11.41969 -11.27006 -11.23220 -11.10441 -11.01939 -10.71750 -10.47022 -10.32140 -9.98902 -9.66346 -9.17563 -8.96631 -8.58844 -7.59416 -7.48804 -6.76967 -4.38178 -0.33472 2.25924 2.37924 2.85546 3.10214 3.12037 3.19960 3.30018 3.52264 3.66149 3.91902 3.95739 4.03266 4.14139 4.38844 4.48083 4.59428 4.67609 4.85649 4.92603 4.98452 5.07515 5.18322 5.27089 5.30790 5.46606 5.57459 5.62965 5.66091 5.75910 5.93195 6.06085 6.16091 6.30354 6.75000 6.88368 7.01910 7.05346 7.24624 7.41584 7.73495 7.79181 7.96183 8.13078 8.22802 8.53816 8.83361 8.86975 9.01428 10.17767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.002532 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.034858 B =11053.702448 C =11823.433149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.530 4.530 3 C -0.147 4.147 4 C -0.113 4.113 5 C 0.088 3.912 6 N -0.737 5.737 7 C 0.562 3.438 8 O -0.540 6.540 9 C -0.127 4.127 10 C -0.219 4.219 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.092 4.092 23 S 2.413 3.587 24 C -0.661 4.661 25 O -0.921 6.921 26 O -0.936 6.936 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 5.294 -11.161 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.620 4.620 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.036 4.036 6 N -0.391 5.391 7 C 0.353 3.647 8 O -0.417 6.417 9 C -0.130 4.130 10 C -0.239 4.239 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.112 4.112 23 S 2.594 3.406 24 C -0.810 4.810 25 O -0.918 6.918 26 O -0.933 6.933 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.860 5.194 -11.888 22.074 hybrid contribution -0.171 0.547 0.363 0.678 sum -18.031 5.741 -11.524 22.156 Atomic orbital electron populations 1.21802 0.89347 1.04212 1.04357 1.29684 1.06337 1.08947 1.17066 1.21937 1.03334 0.90896 1.04332 1.21684 0.96067 1.01204 0.96254 1.21836 0.91841 0.99311 0.90579 1.45852 1.08320 1.58433 1.26535 1.18856 0.81028 0.79135 0.85726 1.90715 1.55329 1.45920 1.49754 1.19475 0.95335 1.03237 0.94988 1.20332 0.96198 1.08257 0.99132 1.20427 0.95293 0.99368 0.96494 1.21087 0.92566 1.09164 1.00486 1.17599 0.93255 0.89812 0.89702 1.19556 0.91832 1.09223 1.28292 0.90107 1.25967 1.01841 0.93950 0.92858 1.69779 1.38391 1.03749 1.28760 0.86319 0.81546 0.79042 0.79567 1.18704 1.20225 1.18999 1.21648 0.92622 0.99877 0.97069 1.08433 0.76544 0.77112 0.78542 1.30342 1.14000 1.16914 1.19710 1.93649 1.26283 1.86720 1.85167 1.93591 1.79523 1.34462 1.85696 0.89957 0.91264 0.90313 0.89586 0.91309 0.89831 0.89562 0.88621 0.89427 0.90591 0.76613 0.89269 0.88934 0.88646 0.90368 0.84794 0.85023 0.85181 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.22 37.16 0.31 -0.35 16 2 C -0.53 -3.92 0.64 -90.62 -0.06 -3.98 16 3 C -0.15 -0.94 7.73 37.16 0.29 -0.65 16 4 C -0.11 -1.10 4.38 -26.73 -0.12 -1.21 16 5 C 0.09 1.30 4.82 -4.05 -0.02 1.28 16 6 N -0.74 -12.77 5.51 -61.24 -0.34 -13.10 16 7 C 0.56 12.90 7.77 -12.31 -0.10 12.81 16 8 O -0.54 -14.27 16.33 5.33 0.09 -14.19 16 9 C -0.13 -3.09 5.87 -105.04 -0.62 -3.71 16 10 C -0.22 -4.69 9.55 -38.92 -0.37 -5.06 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 13 C 0.10 2.66 5.57 -106.87 -0.60 2.07 16 14 C -0.46 -12.28 9.05 -37.73 -0.34 -12.62 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.88 5.14 -17.35 -0.09 1.79 16 17 N -0.78 -21.06 10.96 55.55 0.61 -20.46 16 18 Si 0.91 19.12 29.59 -169.99 -5.03 14.08 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.09 -2.52 8.24 -38.44 -0.32 -2.83 16 23 S 2.41 23.07 4.20 -107.50 -0.45 22.62 16 24 C -0.66 -3.22 9.72 101.05 0.98 -2.24 16 25 O -0.92 -12.91 15.27 -57.83 -0.88 -13.79 16 26 O -0.94 -11.83 17.91 -57.83 -1.04 -12.87 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.16 6.55 -51.93 -0.34 -0.18 16 29 H 0.08 0.39 8.06 -51.93 -0.42 -0.02 16 30 H 0.09 0.71 6.26 -51.93 -0.33 0.39 16 31 H 0.07 0.24 6.56 -51.93 -0.34 -0.10 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.48 5.40 -51.93 -0.28 1.20 16 36 H 0.08 1.11 6.34 -51.93 -0.33 0.78 16 37 H 0.40 5.77 6.49 -40.82 -0.26 5.50 16 38 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.29 7.07 8.30 -40.82 -0.34 6.74 16 42 H 0.13 3.96 5.74 -52.49 -0.30 3.66 16 43 H 0.13 0.40 6.87 -51.92 -0.36 0.05 16 44 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.13 0.32 6.87 -51.92 -0.36 -0.03 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -36.18 372.15 -9.42 -45.60 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.16 Total: 9.23 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.82 Total: -22.74 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.27 Total: -33.56 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.83 Total: -40.84 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: 23.07 SS G_CDS: -0.45 Total: 22.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.18 -9.42 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361521745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.400 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds