Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 O 1.42902 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.35995 * 116.99784 * 179.97438 * 4 3 2 6 6 C 1.38563 * 120.07579 * 0.02562 * 5 4 3 7 7 C 1.38240 * 119.99989 * 179.70750 * 6 5 4 8 8 C 1.38248 * 120.14869 * 0.54021 * 7 6 5 9 9 C 1.50694 * 119.92984 * 179.72468 * 8 7 6 10 10 N 1.46499 * 109.47550 * 269.73374 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 S 1.80999 * 109.46903 * 179.72354 * 13 11 10 15 15 C 1.76200 * 99.99730 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00506 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99909 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47104 * 90.00095 * 19 17 15 21 21 H 1.48502 * 109.46943 * 210.00235 * 19 17 15 22 22 H 1.48497 * 109.46910 * 330.00035 * 19 17 15 23 23 C 1.38243 * 120.14202 * 359.45930 * 8 7 6 24 24 C 1.38563 * 120.00442 * 0.26451 * 23 8 7 25 25 O 1.35994 * 120.07613 * 179.97438 * 24 23 8 26 26 C 1.42898 * 116.99961 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47110 * 60.00415 * 1 2 3 28 28 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47364 * 300.00170 * 1 2 3 30 30 H 1.08996 * 109.47364 * 239.99830 * 2 1 3 31 31 H 1.09000 * 109.47110 * 119.99584 * 2 1 3 32 32 H 1.08996 * 109.47214 * 59.99738 * 3 2 1 33 33 H 1.08995 * 109.46886 * 299.99254 * 3 2 1 34 34 H 1.08008 * 119.99465 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.92407 * 180.29826 * 7 6 5 36 36 H 1.08998 * 109.47333 * 149.72968 * 9 8 7 37 37 H 1.09002 * 109.47271 * 29.73402 * 9 8 7 38 38 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 39 39 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 40 40 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 41 41 H 0.96998 * 120.00709 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.00105 * 180.25031 * 23 8 7 43 43 H 1.08995 * 109.47233 * 299.99906 * 26 25 24 44 44 H 1.09007 * 109.47077 * 59.99863 * 26 25 24 45 45 H 1.09003 * 109.47260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6543 -0.0012 6 6 3.3332 3.8174 -0.0007 7 6 3.9624 5.0482 0.0048 8 6 5.3428 5.1224 -0.0015 9 6 6.0236 6.4669 -0.0018 10 7 6.2435 6.9027 -1.3830 11 6 6.8424 8.0847 -1.6295 12 8 7.1988 8.7877 -0.7077 13 6 7.0630 8.5358 -3.0504 14 16 7.8753 10.1533 -3.0505 15 6 8.0074 10.4291 -4.7858 16 1 7.6337 9.6909 -5.4799 17 6 8.5909 11.5955 -5.2607 18 7 8.6891 11.8018 -6.5570 19 14 9.2355 12.8733 -4.0601 20 1 10.6578 12.5843 -3.7460 21 1 9.1275 14.2234 -4.6690 22 1 8.4336 12.8279 -2.8111 23 6 6.1002 3.9659 -0.0020 24 6 5.4759 2.7289 -0.0018 25 8 6.2195 1.5902 -0.0028 26 6 7.6403 1.7432 -0.0036 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2545 3.7621 -0.0002 35 1 3.3741 5.9540 0.0100 36 1 6.9819 6.3890 0.5116 37 1 5.3940 7.1930 0.5124 38 1 5.9587 6.3402 -2.1202 39 1 7.6935 7.8125 -3.5675 40 1 6.1029 8.6113 -3.5608 41 1 9.0972 12.6168 -6.8889 42 1 7.1785 4.0265 -0.0029 43 1 7.9460 2.2934 -0.8934 44 1 7.9470 2.2926 0.8866 45 1 8.1116 0.7604 -0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041841247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -97.575561 kcal Electronic energy + Delta-G solvation = -25651.944697 eV Core-core repulsion = 21761.263837 eV Total energy + Delta-G solvation = -3890.680860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97411 -39.32092 -38.90771 -37.57082 -34.76424 -34.10363 -32.43794 -31.24180 -30.60638 -29.32079 -27.70010 -27.10452 -25.67351 -25.20855 -23.10015 -21.84897 -21.42471 -20.49471 -18.84472 -17.99220 -17.40011 -17.00532 -16.78856 -16.38893 -16.00580 -15.86065 -15.23791 -15.21146 -14.96090 -14.79353 -14.46938 -14.19844 -13.98068 -13.84863 -13.26258 -13.24848 -12.87104 -12.79542 -12.75416 -12.56522 -12.32133 -11.95368 -11.80908 -11.78664 -11.48000 -11.34700 -11.30711 -11.26090 -11.03122 -11.00794 -10.60606 -9.86350 -9.59658 -9.07579 -9.02040 -8.96635 -8.50166 -8.12644 -6.91749 -6.28752 -4.00573 0.87346 1.03478 2.75751 2.77829 2.94291 2.97114 3.20254 3.33080 3.47842 3.50858 3.78921 4.30563 4.33211 4.33991 4.39248 4.52179 4.61351 4.70045 4.74181 4.78045 4.88311 4.91072 4.92804 4.94541 5.06429 5.10262 5.16553 5.21242 5.23347 5.28054 5.44019 5.47288 5.57023 5.66119 5.70943 5.76092 5.77585 5.89651 6.02063 6.24434 6.30238 6.49618 6.71779 7.23474 7.61265 7.94231 8.41893 8.48023 9.17381 10.80437 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.001851 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.470014 B =15125.217796 C =15570.050922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.057 3.943 4 O -0.305 6.305 5 C 0.108 3.892 6 C -0.175 4.175 7 C -0.095 4.095 8 C -0.102 4.102 9 C 0.166 3.834 10 N -0.733 5.733 11 C 0.531 3.469 12 O -0.520 6.520 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.153 4.153 24 C 0.097 3.903 25 O -0.307 6.307 26 C 0.025 3.975 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.138 0.862 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -25.206 15.093 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.019 4.019 4 O -0.219 6.219 5 C 0.062 3.938 6 C -0.194 4.194 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.043 3.957 10 N -0.388 5.388 11 C 0.317 3.683 12 O -0.395 6.395 13 C -0.274 4.274 14 S 0.085 5.915 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.172 4.172 24 C 0.051 3.949 25 O -0.221 6.221 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.156 0.844 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.760 -24.300 16.492 32.020 hybrid contribution -0.155 -0.141 -1.240 1.257 sum -12.914 -24.441 15.253 31.572 Atomic orbital electron populations 1.21695 0.94198 1.02592 1.02260 1.21472 0.95991 0.94780 1.03824 1.22909 0.78564 0.98980 1.01418 1.86154 1.20979 1.25993 1.88789 1.18253 0.89079 0.85200 1.01298 1.21068 1.00035 0.91364 1.06933 1.20840 0.93714 0.97343 0.99467 1.19599 0.93495 0.94244 1.02904 1.20075 1.00128 0.91297 0.84237 1.46054 1.63194 1.21548 1.07955 1.20305 0.76531 0.80280 0.91227 1.90703 1.49248 1.53490 1.46017 1.23280 1.05309 1.03527 0.95324 1.84779 1.77683 1.17275 1.11805 1.22322 1.46297 1.09356 0.88950 0.89384 1.24714 0.94230 0.97287 0.95073 1.69937 1.42766 1.26890 1.12099 0.86734 0.81096 0.81142 0.82868 1.19219 1.19943 1.15917 1.21031 1.00583 0.90428 1.05148 1.18209 0.88239 0.86117 1.02313 1.86168 1.18788 1.28080 1.89026 1.23103 0.78429 1.03979 1.01523 0.92290 0.91692 0.92355 0.90752 0.90813 0.92027 0.91962 0.84632 0.85106 0.90781 0.90524 0.76528 0.88505 0.88422 0.91947 0.84403 0.92445 0.92589 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.68 6.30 -26.73 -0.17 -0.85 16 3 C 0.06 0.38 4.74 37.16 0.18 0.56 16 4 O -0.31 -3.16 9.92 -34.23 -0.34 -3.50 16 5 C 0.11 1.12 6.70 -39.12 -0.26 0.86 16 6 C -0.18 -1.53 9.04 -39.46 -0.36 -1.88 16 7 C -0.09 -0.85 9.69 -39.58 -0.38 -1.23 16 8 C -0.10 -0.99 5.25 -104.62 -0.55 -1.54 16 9 C 0.17 1.87 5.80 -5.20 -0.03 1.84 16 10 N -0.73 -9.35 5.55 -61.47 -0.34 -9.69 16 11 C 0.53 9.32 7.85 -10.98 -0.09 9.24 16 12 O -0.52 -11.10 15.86 5.55 0.09 -11.01 16 13 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 14 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 15 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 16 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 19 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 23 C -0.15 -1.48 8.69 -39.46 -0.34 -1.82 16 24 C 0.10 1.04 6.70 -39.12 -0.26 0.78 16 25 O -0.31 -3.30 10.28 -34.22 -0.35 -3.65 16 26 C 0.02 0.17 9.81 101.05 0.99 1.16 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 34 H 0.14 0.88 6.30 -52.48 -0.33 0.54 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.40 4.23 8.46 -40.82 -0.35 3.89 16 39 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 40 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 43 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 44 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -35.32 392.41 -8.25 -43.57 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.82 Total: -0.03 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.47 Total: -7.29 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.43 Total: -35.47 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.60 Total: -18.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.32 -8.25 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041841247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.006 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds