Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00074 * 2 1 4 4 C 1.50699 * 109.46971 * 85.00272 * 3 2 1 5 5 O 1.20763 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00303 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.47199 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47213 * 300.00098 * 6 4 3 9 9 C 1.53001 * 109.46719 * 60.00125 * 6 4 3 10 10 S 1.65597 * 120.00032 * 180.02562 * 2 1 3 11 11 O 1.42109 * 106.40218 * 203.53703 * 10 2 1 12 12 O 1.42097 * 106.40494 * 336.45629 * 10 2 1 13 13 C 1.76202 * 107.22217 * 89.99579 * 10 2 1 14 14 C 1.38626 * 119.74951 * 269.72829 * 13 10 2 15 15 C 1.37622 * 120.24632 * 179.71969 * 14 13 10 16 16 C 1.40710 * 119.74524 * 0.57012 * 15 14 13 17 17 C 1.41401 * 120.24655 * 179.68484 * 16 15 14 18 18 H 1.08003 * 119.99837 * 204.40832 * 17 16 15 19 19 C 1.39938 * 119.99804 * 24.39708 * 17 16 15 20 20 N 1.30822 * 120.00057 * 17.86493 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 197.85974 * 19 17 16 22 22 H 1.48497 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46955 * 120.00361 * 21 19 17 24 24 H 1.48498 * 109.47217 * 240.00007 * 21 19 17 25 25 C 1.40717 * 119.51298 * 359.70546 * 16 15 14 26 26 C 1.37619 * 119.74439 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46858 * 269.99521 * 1 2 3 28 28 H 1.08997 * 109.46911 * 29.99858 * 1 2 3 29 29 H 1.08997 * 109.46881 * 149.99859 * 1 2 3 30 30 H 1.08998 * 109.47552 * 205.00505 * 3 2 1 31 31 H 1.08999 * 109.47311 * 325.00336 * 3 2 1 32 32 H 1.08997 * 109.46618 * 60.00548 * 7 6 4 33 33 H 1.08998 * 109.47023 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47047 * 300.00396 * 7 6 4 35 35 H 1.09006 * 109.46964 * 59.99905 * 8 6 4 36 36 H 1.09007 * 109.47039 * 179.97438 * 8 6 4 37 37 H 1.08997 * 109.47561 * 300.00038 * 8 6 4 38 38 H 1.09001 * 109.47462 * 60.00508 * 9 6 4 39 39 H 1.09010 * 109.46982 * 179.97438 * 9 6 4 40 40 H 1.08996 * 109.47305 * 300.00016 * 9 6 4 41 41 H 1.08004 * 119.87947 * 359.97438 * 14 13 10 42 42 H 1.07997 * 120.12786 * 180.28031 * 15 14 13 43 43 H 0.97005 * 119.99724 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.12950 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.87778 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 8 1.8803 1.1257 2.3298 6 6 3.0620 3.0604 1.6899 7 6 3.0662 3.3325 3.1956 8 6 4.5029 2.9591 1.1854 9 6 2.3479 4.2044 0.9674 10 16 2.2930 -1.4341 -0.0006 11 8 3.5760 -1.1570 0.5439 12 8 1.4114 -2.4067 0.5434 13 6 2.5537 -1.8852 -1.6839 14 6 1.6160 -2.6678 -2.3395 15 6 1.8065 -3.0214 -3.6558 16 6 2.9643 -2.5954 -4.3325 17 6 3.1740 -2.9580 -5.6830 18 1 4.1763 -2.9904 -6.0841 19 6 2.0829 -3.2753 -6.4998 20 7 0.8760 -2.9117 -6.1495 21 14 2.3497 -4.2177 -8.0904 22 1 3.7963 -4.5093 -8.2563 23 1 1.5904 -5.4930 -8.0435 24 1 1.8745 -3.4006 -9.2357 25 6 3.9122 -1.8061 -3.6553 26 6 3.6977 -1.4590 -2.3409 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.1857 1.1178 -0.4344 31 1 1.6502 2.0043 -0.5894 32 1 3.5747 2.5175 3.7105 33 1 3.5870 4.2692 3.3940 34 1 2.0396 3.4047 3.5546 35 1 4.4995 2.7655 0.1127 36 1 5.0239 3.8959 1.3836 37 1 5.0117 2.1441 1.7001 38 1 1.3214 4.2767 1.3269 39 1 2.8688 5.1411 1.1663 40 1 2.3444 4.0108 -0.1052 41 1 0.7305 -2.9979 -1.8165 42 1 1.0725 -3.6274 -4.1660 43 1 0.1197 -3.1313 -6.7159 44 1 4.8046 -1.4740 -4.1650 45 1 4.4237 -0.8530 -1.8192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364079424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -105.900313 kcal Electronic energy + Delta-G solvation = -27970.737829 eV Core-core repulsion = 24079.695981 eV Total energy + Delta-G solvation = -3891.041848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06795 -37.60782 -36.53235 -35.94733 -35.48274 -35.09175 -34.07400 -30.28941 -29.51828 -29.14697 -27.53975 -27.15709 -25.85913 -25.19527 -22.55789 -21.50313 -21.16728 -18.72983 -18.30742 -17.66790 -17.20501 -16.75906 -16.18005 -16.01005 -15.47503 -14.99757 -14.85775 -14.21020 -14.10864 -13.91599 -13.71071 -13.38643 -13.28822 -13.10997 -12.55817 -12.48309 -12.40763 -12.37080 -12.25533 -12.21872 -11.93025 -11.82826 -11.77696 -11.46211 -11.31829 -11.24183 -11.20866 -11.14839 -11.08123 -11.06011 -10.93659 -10.41897 -9.98989 -9.77818 -9.55053 -9.53539 -8.56044 -7.99057 -7.74326 -7.18131 -4.83455 1.16271 2.00447 2.21646 2.84902 2.87095 2.89965 2.93299 3.51362 3.63829 3.91414 4.20853 4.53210 4.59720 4.65993 4.79942 4.93644 4.96869 5.28764 5.34351 5.36538 5.38091 5.44756 5.48235 5.56281 5.65518 5.68679 5.75332 5.76922 5.90816 5.99439 6.00541 6.06190 6.08319 6.10524 6.16348 6.60447 6.64817 6.74194 6.94402 7.01375 7.30397 7.38423 7.56453 7.60182 7.73740 7.93001 8.28573 8.47800 8.61467 9.73263 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002983 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.532316 B = 9385.375874 C = 9784.771948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.996 5.996 3 C 0.078 3.922 4 C 0.348 3.652 5 O -0.438 6.438 6 C -0.116 4.116 7 C -0.133 4.133 8 C -0.142 4.142 9 C -0.139 4.139 10 S 2.691 3.309 11 O -0.981 6.981 12 O -0.976 6.976 13 C -0.788 4.788 14 C -0.016 4.016 15 C -0.182 4.182 16 C 0.139 3.861 17 C -0.434 4.434 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.917 3.083 22 H -0.256 1.256 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.237 4.237 26 C 0.000 4.000 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.289 0.711 44 H 0.101 0.899 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 12.306 6.100 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.830 5.830 3 C -0.049 4.049 4 C 0.220 3.780 5 O -0.309 6.309 6 C -0.118 4.118 7 C -0.190 4.190 8 C -0.200 4.200 9 C -0.196 4.196 10 S 2.791 3.209 11 O -0.972 6.972 12 O -0.967 6.967 13 C -0.884 4.884 14 C -0.036 4.036 15 C -0.202 4.202 16 C 0.135 3.865 17 C -0.461 4.461 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.740 3.260 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.258 4.258 26 C -0.021 4.021 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.051 11.531 7.322 13.660 hybrid contribution -0.070 -0.180 -1.618 1.630 sum -0.019 11.351 5.704 12.703 Atomic orbital electron populations 1.21410 0.78452 1.03011 1.01777 1.57510 1.15097 1.20323 1.90098 1.21655 0.99391 0.87741 0.96102 1.25245 0.75555 0.85793 0.91447 1.90362 1.37958 1.55344 1.47245 1.21210 0.97422 0.94916 0.98212 1.21708 1.02488 1.01696 0.93137 1.21874 0.93269 1.02912 1.01910 1.21857 1.00324 0.97038 1.00431 1.01480 0.72405 0.71765 0.75275 1.93464 1.40367 1.84663 1.78694 1.93476 1.66586 1.58071 1.78588 1.29252 1.08426 1.26526 1.24208 1.20259 0.95164 0.93630 0.94563 1.21339 1.00766 1.05152 0.92978 1.17859 0.90449 0.85669 0.92517 1.19982 0.94727 1.36597 0.94782 0.89355 1.26141 0.94419 0.93597 1.00877 1.69822 1.00332 1.31628 1.36935 0.86105 0.80438 0.79694 0.79784 1.17958 1.19206 1.19514 1.21050 1.02495 1.07050 0.95199 1.20149 0.93122 0.94736 0.94047 0.92682 0.91512 0.90674 0.86741 0.87175 0.91992 0.92103 0.92252 0.91470 0.91457 0.91621 0.92261 0.91393 0.91544 0.87926 0.85928 0.90006 0.88128 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.32 59.85 0.62 2.03 16 2 N -1.00 -16.44 2.68 -123.05 -0.33 -16.77 16 3 C 0.08 1.04 5.12 -5.19 -0.03 1.01 16 4 C 0.35 4.77 6.03 -29.04 -0.18 4.59 16 5 O -0.44 -7.57 16.04 6.00 0.10 -7.47 16 6 C -0.12 -1.17 0.87 -155.66 -0.14 -1.31 16 7 C -0.13 -1.33 7.76 37.16 0.29 -1.04 16 8 C -0.14 -1.31 8.26 37.16 0.31 -1.00 16 9 C -0.14 -1.04 8.25 37.16 0.31 -0.73 16 10 S 2.69 55.23 5.59 -107.50 -0.60 54.63 16 11 O -0.98 -21.35 16.23 -57.17 -0.93 -22.27 16 12 O -0.98 -22.35 16.32 -57.17 -0.93 -23.28 16 13 C -0.79 -17.46 6.00 -39.29 -0.24 -17.69 16 14 C -0.02 -0.37 9.49 -39.66 -0.38 -0.74 16 15 C -0.18 -4.51 8.70 -38.87 -0.34 -4.85 16 16 C 0.14 3.46 5.57 -106.82 -0.60 2.87 16 17 C -0.43 -10.44 9.05 -37.74 -0.34 -10.79 16 18 H 0.09 2.02 7.91 -52.48 -0.41 1.60 16 19 C 0.07 1.62 5.14 -17.35 -0.09 1.53 16 20 N -0.76 -17.78 10.95 55.55 0.61 -17.17 16 21 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 22 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 23 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 24 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.48 9.80 -38.87 -0.38 -5.86 16 26 C 0.00 -0.01 9.49 -39.66 -0.38 -0.38 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 30 H 0.11 1.46 6.84 -51.93 -0.36 1.10 16 31 H 0.11 1.07 7.20 -51.93 -0.37 0.70 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.56 7.28 -51.93 -0.38 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.07 0.43 7.28 -51.93 -0.38 0.05 16 41 H 0.10 2.22 7.59 -52.48 -0.40 1.83 16 42 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 43 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 44 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 45 H 0.10 1.98 7.60 -52.49 -0.40 1.59 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -31.29 383.59 -9.66 -40.95 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.77 Total: 6.29 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -1.55 Total: -32.36 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.28 Total: -33.94 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.77 Total: -53.03 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 55.23 SS G_CDS: -0.60 Total: 54.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.29 -9.66 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364079424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.949 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds