Wall clock time and date at job start Sat Apr 11 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00074 * 2 1 4 4 C 1.50699 * 109.46971 * 85.00272 * 3 2 1 5 5 O 1.20763 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00303 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.47199 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47213 * 300.00098 * 6 4 3 9 9 C 1.53001 * 109.46719 * 60.00125 * 6 4 3 10 10 S 1.65597 * 120.00032 * 180.02562 * 2 1 3 11 11 O 1.42109 * 106.40218 * 203.53703 * 10 2 1 12 12 O 1.42097 * 106.40494 * 336.45629 * 10 2 1 13 13 C 1.76202 * 107.22217 * 89.99579 * 10 2 1 14 14 C 1.38626 * 119.74951 * 269.72829 * 13 10 2 15 15 C 1.37622 * 120.24632 * 179.71969 * 14 13 10 16 16 C 1.40710 * 119.74524 * 0.57012 * 15 14 13 17 17 C 1.41401 * 120.24655 * 179.68484 * 16 15 14 18 18 H 1.08003 * 119.99837 * 204.40832 * 17 16 15 19 19 C 1.39938 * 119.99804 * 24.39708 * 17 16 15 20 20 N 1.30822 * 120.00057 * 17.86493 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 197.85974 * 19 17 16 22 22 H 1.48497 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46955 * 120.00361 * 21 19 17 24 24 H 1.48498 * 109.47217 * 240.00007 * 21 19 17 25 25 C 1.40717 * 119.51298 * 359.70546 * 16 15 14 26 26 C 1.37619 * 119.74439 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46858 * 269.99521 * 1 2 3 28 28 H 1.08997 * 109.46911 * 29.99858 * 1 2 3 29 29 H 1.08997 * 109.46881 * 149.99859 * 1 2 3 30 30 H 1.08998 * 109.47552 * 205.00505 * 3 2 1 31 31 H 1.08999 * 109.47311 * 325.00336 * 3 2 1 32 32 H 1.08997 * 109.46618 * 60.00548 * 7 6 4 33 33 H 1.08998 * 109.47023 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47047 * 300.00396 * 7 6 4 35 35 H 1.09006 * 109.46964 * 59.99905 * 8 6 4 36 36 H 1.09007 * 109.47039 * 179.97438 * 8 6 4 37 37 H 1.08997 * 109.47561 * 300.00038 * 8 6 4 38 38 H 1.09001 * 109.47462 * 60.00508 * 9 6 4 39 39 H 1.09010 * 109.46982 * 179.97438 * 9 6 4 40 40 H 1.08996 * 109.47305 * 300.00016 * 9 6 4 41 41 H 1.08004 * 119.87947 * 359.97438 * 14 13 10 42 42 H 1.07997 * 120.12786 * 180.28031 * 15 14 13 43 43 H 0.97005 * 119.99724 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.12950 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.87778 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 8 1.8803 1.1257 2.3298 6 6 3.0620 3.0604 1.6899 7 6 3.0662 3.3325 3.1956 8 6 4.5029 2.9591 1.1854 9 6 2.3479 4.2044 0.9674 10 16 2.2930 -1.4341 -0.0006 11 8 3.5760 -1.1570 0.5439 12 8 1.4114 -2.4067 0.5434 13 6 2.5537 -1.8852 -1.6839 14 6 1.6160 -2.6678 -2.3395 15 6 1.8065 -3.0214 -3.6558 16 6 2.9643 -2.5954 -4.3325 17 6 3.1740 -2.9580 -5.6830 18 1 4.1763 -2.9904 -6.0841 19 6 2.0829 -3.2753 -6.4998 20 7 0.8760 -2.9117 -6.1495 21 14 2.3497 -4.2177 -8.0904 22 1 3.7963 -4.5093 -8.2563 23 1 1.5904 -5.4930 -8.0435 24 1 1.8745 -3.4006 -9.2357 25 6 3.9122 -1.8061 -3.6553 26 6 3.6977 -1.4590 -2.3409 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.1857 1.1178 -0.4344 31 1 1.6502 2.0043 -0.5894 32 1 3.5747 2.5175 3.7105 33 1 3.5870 4.2692 3.3940 34 1 2.0396 3.4047 3.5546 35 1 4.4995 2.7655 0.1127 36 1 5.0239 3.8959 1.3836 37 1 5.0117 2.1441 1.7001 38 1 1.3214 4.2767 1.3269 39 1 2.8688 5.1411 1.1663 40 1 2.3444 4.0108 -0.1052 41 1 0.7305 -2.9979 -1.8165 42 1 1.0725 -3.6274 -4.1660 43 1 0.1197 -3.1313 -6.7159 44 1 4.8046 -1.4740 -4.1650 45 1 4.4237 -0.8530 -1.8192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364079424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:04 Heat of formation + Delta-G solvation = -124.585340 kcal Electronic energy + Delta-G solvation = -27971.548073 eV Core-core repulsion = 24079.695981 eV Total energy + Delta-G solvation = -3891.852091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10714 -39.39288 -38.25132 -36.95968 -36.80135 -36.59426 -35.81171 -32.07715 -31.31101 -30.21396 -28.15452 -27.95603 -27.63241 -26.36875 -23.59368 -23.23629 -22.96174 -20.06831 -19.48124 -19.43134 -18.70619 -18.29061 -17.42187 -17.27597 -16.99649 -16.20814 -16.01028 -15.83568 -15.44458 -15.11908 -14.96037 -14.67995 -14.62382 -14.27844 -14.07153 -13.99224 -13.84575 -13.58518 -13.28765 -13.21199 -13.12770 -13.02209 -12.99193 -12.92992 -12.88889 -12.69823 -12.61778 -12.55873 -12.38812 -11.98356 -11.84432 -11.78737 -11.57014 -11.38973 -11.23405 -10.96967 -9.84213 -9.71992 -9.56509 -8.87995 -6.65061 -0.43790 0.46071 0.97440 1.05213 1.36702 1.42344 1.53646 2.07923 2.12153 2.51203 2.83897 3.04740 3.43204 3.50650 3.71668 3.79442 3.97433 4.05288 4.25120 4.28728 4.30888 4.45790 4.51180 4.64966 4.74800 4.78707 4.85743 4.88893 4.90040 4.90697 4.93112 5.00627 5.01269 5.07769 5.09101 5.22669 5.25793 5.35549 5.42796 5.50074 5.55681 5.59099 5.76781 5.93271 6.13965 6.48383 6.54324 6.67643 6.80180 8.07042 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002983 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.532316 B = 9385.375874 C = 9784.771948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.994 5.994 3 C 0.062 3.938 4 C 0.346 3.654 5 O -0.484 6.484 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.144 4.144 9 C -0.137 4.137 10 S 2.711 3.289 11 O -0.996 6.996 12 O -1.006 7.006 13 C -0.795 4.795 14 C -0.022 4.022 15 C -0.205 4.205 16 C 0.111 3.889 17 C -0.461 4.461 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.793 5.793 21 Si 0.990 3.010 22 H -0.254 1.254 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.252 4.252 26 C -0.001 4.001 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.154 0.846 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.116 0.884 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 14.449 5.016 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.831 5.831 3 C -0.064 4.064 4 C 0.221 3.779 5 O -0.358 6.358 6 C -0.115 4.115 7 C -0.190 4.190 8 C -0.202 4.202 9 C -0.194 4.194 10 S 2.809 3.191 11 O -0.987 6.987 12 O -0.996 6.996 13 C -0.889 4.889 14 C -0.043 4.043 15 C -0.226 4.226 16 C 0.108 3.892 17 C -0.488 4.488 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.415 5.415 21 Si 0.809 3.191 22 H -0.177 1.177 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.272 4.272 26 C -0.021 4.021 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.134 0.866 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.459 13.684 6.221 15.038 hybrid contribution -0.221 -0.755 -1.178 1.416 sum 0.238 12.928 5.043 13.879 Atomic orbital electron populations 1.21636 0.77060 1.04515 1.02192 1.57157 1.15981 1.20156 1.89782 1.22151 1.00182 0.87083 0.96945 1.25822 0.74503 0.86639 0.90965 1.90358 1.40169 1.56931 1.48355 1.21261 0.97775 0.93873 0.98561 1.21725 1.02081 1.02119 0.93108 1.21933 0.92531 1.03465 1.02225 1.21892 1.00142 0.96490 1.00867 1.00766 0.71957 0.72189 0.74211 1.93435 1.41515 1.85094 1.78608 1.93432 1.67201 1.60168 1.78827 1.29562 1.08255 1.26165 1.24948 1.20418 0.95815 0.93729 0.94296 1.21341 1.01221 1.06270 0.93749 1.18209 0.91056 0.86526 0.93454 1.20271 0.95622 1.37876 0.95006 0.88861 1.26997 0.93731 0.93771 1.04011 1.69846 1.01256 1.32011 1.38431 0.85022 0.80305 0.78167 0.75559 1.17718 1.18877 1.18424 1.21293 1.02886 1.07100 0.95950 1.20457 0.93350 0.94454 0.93793 0.92882 0.87665 0.91558 0.86004 0.82865 0.94234 0.89484 0.93017 0.90448 0.88945 0.93802 0.92314 0.89408 0.90097 0.87239 0.87115 0.89002 0.86573 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.48 10.32 127.77 1.32 3.79 16 2 N -0.99 -31.57 2.68 -543.23 -1.45 -33.02 16 3 C 0.06 1.50 5.12 85.63 0.44 1.94 16 4 C 0.35 8.98 6.03 29.10 0.18 9.16 16 5 O -0.48 -16.70 16.04 -1.46 -0.02 -16.72 16 6 C -0.11 -2.03 0.87 -52.93 -0.05 -2.07 16 7 C -0.13 -2.48 7.76 71.98 0.56 -1.92 16 8 C -0.14 -2.30 8.26 71.98 0.59 -1.70 16 9 C -0.14 -1.53 8.25 71.98 0.59 -0.94 16 10 S 2.71 110.79 5.59 -56.49 -0.32 110.47 16 11 O -1.00 -42.99 16.23 -128.00 -2.08 -45.07 16 12 O -1.01 -46.68 16.32 -128.00 -2.09 -48.77 16 13 C -0.80 -35.21 6.00 22.46 0.13 -35.07 16 14 C -0.02 -1.07 9.49 22.22 0.21 -0.86 16 15 C -0.21 -10.49 8.70 22.73 0.20 -10.29 16 16 C 0.11 5.64 5.57 -21.29 -0.12 5.52 16 17 C -0.46 -22.44 9.05 23.46 0.21 -22.23 16 18 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 19 C 0.03 1.56 5.14 85.25 0.44 2.00 16 20 N -0.79 -37.18 10.95 21.82 0.24 -36.94 16 21 Si 0.99 33.69 29.60 68.60 2.03 35.72 16 22 H -0.25 -8.46 7.11 99.48 0.71 -7.76 16 23 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 24 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 25 C -0.25 -11.63 9.80 22.73 0.22 -11.40 16 26 C 0.00 -0.03 9.49 22.22 0.21 0.18 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 2.03 7.94 -2.39 -0.02 2.02 16 29 H 0.07 1.92 7.79 -2.39 -0.02 1.90 16 30 H 0.12 2.80 6.84 -2.39 -0.02 2.79 16 31 H 0.15 2.36 7.20 -2.39 -0.02 2.34 16 32 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 35 H 0.08 1.06 7.28 -2.38 -0.02 1.05 16 36 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.08 0.68 7.28 -2.39 -0.02 0.67 16 41 H 0.11 4.89 7.59 -2.91 -0.02 4.87 16 42 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 43 H 0.30 12.39 8.30 -92.70 -0.77 11.62 16 44 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 45 H 0.13 4.78 7.60 -2.91 -0.02 4.75 16 Total: -1.00 -69.71 383.59 2.43 -67.28 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.98 Total: 30.95 kcal Atomic # 6 Polarization: -69.04 SS G_CDS: 5.14 Total: -63.89 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.21 Total: -69.96 kcal Atomic # 8 Polarization: -106.37 SS G_CDS: -4.19 Total: -110.56 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -0.32 Total: 110.47 kcal Total: -69.71 2.43 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364079424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.307 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds