Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.53007 * 109.47227 * 119.99429 * 2 1 3 5 5 C 1.53001 * 109.47026 * 174.99985 * 4 2 1 6 6 N 1.46896 * 109.46793 * 183.27788 * 5 4 2 7 7 C 1.46904 * 110.99956 * 287.51443 * 6 5 4 8 8 C 1.50692 * 109.47081 * 294.83030 * 7 6 5 9 9 H 1.07995 * 120.00719 * 2.38627 * 8 7 6 10 10 C 1.37886 * 120.00240 * 182.38773 * 8 7 6 11 11 N 1.31508 * 120.00442 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99417 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47205 * 90.00157 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99729 * 12 10 8 15 15 H 1.48503 * 109.47365 * 330.00279 * 12 10 8 16 16 C 1.38529 * 110.99867 * 163.56171 * 6 5 4 17 17 N 1.32913 * 120.75044 * 0.02562 * 16 6 5 18 18 C 1.32145 * 121.16378 * 179.97438 * 17 16 6 19 19 Cl 1.73603 * 118.80709 * 179.71393 * 18 17 16 20 20 N 1.31805 * 122.39034 * 359.97438 * 18 17 16 21 21 C 1.32860 * 120.63002 * 0.02562 * 20 18 17 22 22 N 1.37518 * 134.78000 * 180.02562 * 21 20 18 23 23 H 0.97002 * 126.28155 * 359.96374 * 22 21 20 24 24 C 1.36642 * 107.43699 * 179.97438 * 22 21 20 25 25 O 1.35336 * 125.08857 * 179.97438 * 24 22 21 26 26 N 1.30752 * 109.82360 * 359.97438 * 24 22 21 27 27 C 1.35720 * 109.39171 * 0.02562 * 26 24 22 28 28 H 1.08996 * 109.47136 * 299.99875 * 1 2 3 29 29 H 1.08998 * 109.47086 * 60.00578 * 1 2 3 30 30 H 1.09003 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47787 * 239.99797 * 2 1 3 32 32 H 1.09003 * 109.47437 * 59.99956 * 3 2 1 33 33 H 1.08996 * 109.47419 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47162 * 299.99901 * 3 2 1 35 35 H 1.09009 * 109.46658 * 55.00355 * 4 2 1 36 36 H 1.08995 * 109.47259 * 295.00297 * 4 2 1 37 37 H 1.08994 * 109.46831 * 63.28094 * 5 4 2 38 38 H 1.08995 * 109.47242 * 303.27928 * 5 4 2 39 39 H 1.08997 * 109.47121 * 54.83493 * 7 6 5 40 40 H 1.09008 * 109.46954 * 174.83302 * 7 6 5 41 41 H 0.97000 * 119.99733 * 179.97438 * 11 10 8 42 42 H 0.96700 * 114.00245 * 269.99918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5649 -0.8309 1.1880 6 7 4.0480 -1.5917 2.3481 7 6 3.9402 -0.7984 3.5798 8 6 4.8651 0.3883 3.4955 9 1 5.4435 0.5597 2.5998 10 6 4.9729 1.2555 4.5621 11 7 5.7804 2.2909 4.4888 12 14 3.9720 0.9595 6.1113 13 1 4.7480 0.1061 7.0466 14 1 3.6707 2.2599 6.7620 15 1 2.7015 0.2771 5.7570 16 6 5.3482 -2.0267 2.1499 17 7 5.9953 -1.7437 1.0240 18 6 7.2358 -2.1541 0.8266 19 17 8.0204 -1.7561 -0.6700 20 7 7.8973 -2.8589 1.7226 21 6 7.3300 -3.1887 2.8778 22 7 7.7327 -3.8919 3.9889 23 1 8.5983 -4.3092 4.1215 24 6 6.6897 -3.8951 4.8717 25 8 6.7011 -4.4901 6.0872 26 7 5.6790 -3.2373 4.3663 27 6 6.0125 -2.7757 3.1343 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6054 -1.7198 1.2953 36 1 1.7517 -0.1582 2.1370 37 1 4.0017 0.1675 1.2008 38 1 3.8557 -1.3431 0.2709 39 1 2.9139 -0.4515 3.6999 40 1 4.2176 -1.4153 4.4347 41 1 5.8560 2.9011 5.2391 42 1 6.4001 -5.4090 6.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364175134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = 62.254564 kcal Electronic energy + Delta-G solvation = -28068.070231 eV Core-core repulsion = 24111.028827 eV Total energy + Delta-G solvation = -3957.041404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39641 -39.62786 -37.89823 -37.20148 -36.39672 -35.65373 -33.23253 -32.51946 -31.85257 -29.59495 -28.67180 -27.05478 -26.79562 -23.99748 -23.72955 -22.60607 -21.75341 -20.68848 -19.49659 -19.39072 -18.25880 -17.37548 -17.12301 -16.79364 -16.08904 -15.30469 -15.15192 -14.86395 -14.73971 -14.34517 -14.04504 -13.30081 -13.28220 -13.04894 -12.81948 -12.63375 -12.46803 -11.98516 -11.75965 -11.60169 -11.32634 -11.27722 -11.23065 -11.09064 -11.02254 -10.81223 -10.51659 -10.37419 -10.35026 -10.30968 -10.07993 -9.86474 -9.68401 -9.43954 -8.90978 -8.69070 -8.59444 -7.51221 -6.17948 -4.20150 0.81303 1.46404 1.50797 2.27897 2.64683 3.26262 3.32778 3.36008 3.68261 3.83084 4.19832 4.34148 4.52921 4.67111 4.88152 5.16568 5.19868 5.24763 5.28606 5.51220 5.66732 5.77888 5.88149 6.00493 6.02500 6.09327 6.16076 6.22795 6.32662 6.45787 6.48215 6.50177 6.56023 6.69415 6.79811 6.84781 6.96537 7.05673 7.28646 7.49669 7.56182 7.68002 7.84156 8.27794 8.29790 8.82498 9.41300 10.94004 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.005733 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.508364 B = 4882.581699 C = 6656.731484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.111 4.111 5 C 0.058 3.942 6 N -0.459 5.459 7 C 0.158 3.842 8 C -0.557 4.557 9 H 0.080 0.920 10 C 0.082 3.918 11 N -0.888 5.888 12 Si 0.872 3.128 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.261 1.261 16 C 0.490 3.510 17 N -0.553 5.553 18 C 0.420 3.580 19 Cl 0.020 6.980 20 N -0.543 5.543 21 C 0.311 3.689 22 N -0.579 5.579 23 H 0.426 0.574 24 C 0.434 3.566 25 O -0.433 6.433 26 N -0.424 5.424 27 C -0.041 4.041 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.265 0.735 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 -12.350 -5.096 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.068 4.068 6 N -0.172 5.172 7 C 0.035 3.965 8 C -0.596 4.596 9 H 0.098 0.902 10 C -0.122 4.122 11 N -0.525 5.525 12 Si 0.698 3.302 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.186 1.186 16 C 0.242 3.758 17 N -0.281 5.281 18 C 0.123 3.877 19 Cl 0.048 6.952 20 N -0.271 5.271 21 C 0.070 3.930 22 N -0.207 5.207 23 H 0.266 0.734 24 C 0.129 3.871 25 O -0.233 6.233 26 N -0.155 5.155 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.932 -11.690 -5.122 12.908 hybrid contribution 0.959 -0.450 1.210 1.608 sum -0.972 -12.140 -3.912 12.792 Atomic orbital electron populations 1.21823 0.95747 1.01223 1.01379 1.21036 0.95075 0.96693 0.98263 1.21882 1.02068 0.95556 1.01100 1.21646 0.95038 1.00259 0.97925 1.22196 0.94507 0.98876 0.91240 1.59049 1.11433 1.38435 1.08266 1.20618 0.98726 0.91949 0.85219 1.21554 1.25493 1.08930 1.03579 0.90245 1.24826 0.94637 0.94471 0.98266 1.69907 1.36710 1.14068 1.31852 0.86893 0.81538 0.77837 0.83885 1.19798 1.21115 1.18557 1.19088 0.87488 0.84917 0.84284 1.68034 1.09049 1.26813 1.24200 1.22055 0.86544 0.90369 0.88778 1.98401 1.78807 1.91762 1.26253 1.66350 1.39100 1.20525 1.01124 1.17901 0.91285 0.95927 0.87936 1.42811 1.17217 1.47544 1.13169 0.73353 1.20147 0.83413 0.98685 0.84864 1.84925 1.87368 1.31892 1.19161 1.70593 1.24674 1.13094 1.07094 1.19369 0.94677 1.07898 0.94808 0.92768 0.93152 0.93056 0.91516 0.92563 0.91782 0.93555 0.92065 0.91364 0.90396 0.90463 0.93516 0.92550 0.92478 0.73640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -2.15 8.95 37.16 0.33 -1.81 16 4 C -0.11 -1.77 4.68 -26.73 -0.13 -1.90 16 5 C 0.06 1.09 3.91 -3.83 -0.01 1.08 16 6 N -0.46 -9.62 4.71 -174.16 -0.82 -10.44 16 7 C 0.16 3.72 3.81 -4.98 -0.02 3.70 16 8 C -0.56 -15.19 8.14 -34.44 -0.28 -15.47 16 9 H 0.08 2.40 6.90 -52.49 -0.36 2.04 16 10 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 11 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 12 Si 0.87 21.30 27.42 -169.99 -4.66 16.64 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.26 -6.03 6.61 56.52 0.37 -5.66 16 16 C 0.49 10.49 5.23 -154.56 -0.81 9.68 16 17 N -0.55 -11.34 8.58 -10.66 -0.09 -11.43 16 18 C 0.42 8.03 8.17 -91.84 -0.75 7.28 16 19 Cl 0.02 0.31 29.25 -51.86 -1.52 -1.20 16 20 N -0.54 -10.20 10.43 -10.91 -0.11 -10.31 16 21 C 0.31 5.75 8.51 -155.56 -1.32 4.42 16 22 N -0.58 -8.24 6.22 -13.39 -0.08 -8.32 16 23 H 0.43 4.34 8.96 -40.82 -0.37 3.98 16 24 C 0.43 6.62 9.41 -88.69 -0.83 5.79 16 25 O -0.43 -4.86 13.63 -17.70 -0.24 -5.10 16 26 N -0.42 -8.27 9.92 -12.03 -0.12 -8.39 16 27 C -0.04 -0.84 6.59 -84.50 -0.56 -1.40 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.03 6.64 -51.93 -0.34 0.68 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.07 1.19 6.82 -51.93 -0.35 0.83 16 37 H 0.08 1.67 5.08 -51.93 -0.26 1.41 16 38 H 0.08 1.39 7.25 -51.93 -0.38 1.01 16 39 H 0.05 1.08 5.84 -51.93 -0.30 0.78 16 40 H 0.06 1.39 5.71 -51.92 -0.30 1.09 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.41 1.97 9.06 45.56 0.41 2.39 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -33.24 357.48 -10.26 -43.50 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.38 Total: 4.90 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -4.40 Total: 10.73 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -0.45 Total: -74.86 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.24 Total: -5.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.66 Total: 16.64 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.24 -10.26 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364175134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.754 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds