Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.53007 * 109.47227 * 119.99429 * 2 1 3 5 5 C 1.53001 * 109.47026 * 174.99985 * 4 2 1 6 6 N 1.46896 * 109.46793 * 183.27788 * 5 4 2 7 7 C 1.46904 * 110.99956 * 287.51443 * 6 5 4 8 8 C 1.50692 * 109.47081 * 294.83030 * 7 6 5 9 9 H 1.07995 * 120.00719 * 2.38627 * 8 7 6 10 10 C 1.37886 * 120.00240 * 182.38773 * 8 7 6 11 11 N 1.31508 * 120.00442 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99417 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47205 * 90.00157 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99729 * 12 10 8 15 15 H 1.48503 * 109.47365 * 330.00279 * 12 10 8 16 16 C 1.38529 * 110.99867 * 163.56171 * 6 5 4 17 17 N 1.32913 * 120.75044 * 0.02562 * 16 6 5 18 18 C 1.32145 * 121.16378 * 179.97438 * 17 16 6 19 19 Cl 1.73603 * 118.80709 * 179.71393 * 18 17 16 20 20 N 1.31805 * 122.39034 * 359.97438 * 18 17 16 21 21 C 1.32860 * 120.63002 * 0.02562 * 20 18 17 22 22 N 1.37518 * 134.78000 * 180.02562 * 21 20 18 23 23 H 0.97002 * 126.28155 * 359.96374 * 22 21 20 24 24 C 1.36642 * 107.43699 * 179.97438 * 22 21 20 25 25 O 1.35336 * 125.08857 * 179.97438 * 24 22 21 26 26 N 1.30752 * 109.82360 * 359.97438 * 24 22 21 27 27 C 1.35720 * 109.39171 * 0.02562 * 26 24 22 28 28 H 1.08996 * 109.47136 * 299.99875 * 1 2 3 29 29 H 1.08998 * 109.47086 * 60.00578 * 1 2 3 30 30 H 1.09003 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47787 * 239.99797 * 2 1 3 32 32 H 1.09003 * 109.47437 * 59.99956 * 3 2 1 33 33 H 1.08996 * 109.47419 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47162 * 299.99901 * 3 2 1 35 35 H 1.09009 * 109.46658 * 55.00355 * 4 2 1 36 36 H 1.08995 * 109.47259 * 295.00297 * 4 2 1 37 37 H 1.08994 * 109.46831 * 63.28094 * 5 4 2 38 38 H 1.08995 * 109.47242 * 303.27928 * 5 4 2 39 39 H 1.08997 * 109.47121 * 54.83493 * 7 6 5 40 40 H 1.09008 * 109.46954 * 174.83302 * 7 6 5 41 41 H 0.97000 * 119.99733 * 179.97438 * 11 10 8 42 42 H 0.96700 * 114.00245 * 269.99918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5649 -0.8309 1.1880 6 7 4.0480 -1.5917 2.3481 7 6 3.9402 -0.7984 3.5798 8 6 4.8651 0.3883 3.4955 9 1 5.4435 0.5597 2.5998 10 6 4.9729 1.2555 4.5621 11 7 5.7804 2.2909 4.4888 12 14 3.9720 0.9595 6.1113 13 1 4.7480 0.1061 7.0466 14 1 3.6707 2.2599 6.7620 15 1 2.7015 0.2771 5.7570 16 6 5.3482 -2.0267 2.1499 17 7 5.9953 -1.7437 1.0240 18 6 7.2358 -2.1541 0.8266 19 17 8.0204 -1.7561 -0.6700 20 7 7.8973 -2.8589 1.7226 21 6 7.3300 -3.1887 2.8778 22 7 7.7327 -3.8919 3.9889 23 1 8.5983 -4.3092 4.1215 24 6 6.6897 -3.8951 4.8717 25 8 6.7011 -4.4901 6.0872 26 7 5.6790 -3.2373 4.3663 27 6 6.0125 -2.7757 3.1343 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6054 -1.7198 1.2953 36 1 1.7517 -0.1582 2.1370 37 1 4.0017 0.1675 1.2008 38 1 3.8557 -1.3431 0.2709 39 1 2.9139 -0.4515 3.6999 40 1 4.2176 -1.4153 4.4347 41 1 5.8560 2.9011 5.2391 42 1 6.4001 -5.4090 6.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364175134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = 36.251281 kcal Electronic energy + Delta-G solvation = -28069.197818 eV Core-core repulsion = 24111.028827 eV Total energy + Delta-G solvation = -3958.168991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77841 -41.05075 -39.35514 -38.34624 -37.70491 -36.94073 -34.94959 -34.27191 -33.35926 -30.98069 -30.40348 -28.62304 -27.92538 -25.55958 -25.18750 -24.23184 -23.07205 -22.17177 -20.82605 -20.61885 -19.66184 -19.10434 -18.63540 -18.31346 -17.50557 -16.76065 -16.68817 -16.35122 -16.06842 -15.95266 -15.54518 -14.62790 -14.56225 -14.42621 -14.35370 -14.29602 -13.82259 -13.36917 -13.26607 -12.96425 -12.90581 -12.69242 -12.55867 -12.48108 -12.44003 -12.37342 -12.16194 -11.86658 -11.79552 -11.66331 -11.50191 -11.45871 -11.29071 -10.90197 -10.79811 -10.38818 -10.20184 -9.07625 -8.35274 -6.40949 -0.62105 -0.04580 0.11356 1.03031 1.31755 1.34370 1.34879 1.44335 2.26068 2.29738 2.48803 2.72078 3.01065 3.10461 3.28984 3.55914 3.95728 4.01493 4.11981 4.20961 4.30983 4.44278 4.67032 4.78616 4.79398 4.85663 4.90843 4.94447 5.00887 5.08392 5.09973 5.22299 5.27936 5.35037 5.38248 5.41120 5.58323 5.60625 5.67936 5.96531 6.02399 6.13942 6.41890 6.57165 6.61983 6.78725 7.23448 8.80336 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.005733 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.508364 B = 4882.581699 C = 6656.731484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.066 3.934 6 N -0.457 5.457 7 C 0.173 3.827 8 C -0.546 4.546 9 H 0.036 0.964 10 C 0.025 3.975 11 N -0.938 5.938 12 Si 0.934 3.066 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.238 1.238 16 C 0.461 3.539 17 N -0.562 5.562 18 C 0.399 3.601 19 Cl 0.046 6.954 20 N -0.536 5.536 21 C 0.301 3.699 22 N -0.558 5.558 23 H 0.447 0.553 24 C 0.469 3.531 25 O -0.425 6.425 26 N -0.471 5.471 27 C -0.059 4.059 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.266 0.734 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -14.476 -4.323 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.060 4.060 6 N -0.171 5.171 7 C 0.048 3.952 8 C -0.584 4.584 9 H 0.055 0.945 10 C -0.175 4.175 11 N -0.577 5.577 12 Si 0.757 3.243 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.161 1.161 16 C 0.214 3.786 17 N -0.290 5.290 18 C 0.102 3.898 19 Cl 0.074 6.926 20 N -0.263 5.263 21 C 0.057 3.943 22 N -0.188 5.188 23 H 0.291 0.709 24 C 0.163 3.837 25 O -0.231 6.231 26 N -0.202 5.202 27 C -0.185 4.185 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -2.810 -13.887 -4.362 14.825 hybrid contribution 1.426 0.096 0.963 1.724 sum -1.384 -13.790 -3.399 14.270 Atomic orbital electron populations 1.21776 0.93637 1.02221 1.02015 1.21028 0.96729 0.95557 0.97324 1.21856 1.00356 0.96641 1.01557 1.21616 0.92846 1.01071 0.98572 1.22144 0.96239 0.96683 0.90911 1.59104 1.11986 1.38218 1.07763 1.20303 0.97741 0.90509 0.86599 1.21654 1.25152 1.09922 1.01711 0.94538 1.25686 0.95862 0.94192 1.01728 1.70054 1.39041 1.15557 1.33078 0.85907 0.80866 0.77997 0.79540 1.19827 1.20602 1.16095 1.19307 0.88055 0.85987 0.85281 1.67992 1.09764 1.26831 1.24371 1.22438 0.86553 0.90895 0.89964 1.98398 1.78128 1.91573 1.24499 1.66462 1.38667 1.20029 1.01162 1.18123 0.91067 0.96369 0.88709 1.42715 1.18066 1.46481 1.11545 0.70857 1.20225 0.82361 0.96218 0.84872 1.84908 1.87367 1.34329 1.16462 1.70550 1.26762 1.15639 1.07269 1.19555 0.95537 1.08024 0.95428 0.93145 0.91538 0.91884 0.90520 0.93778 0.94409 0.91370 0.90718 0.92935 0.93903 0.89955 0.92810 0.93008 0.92453 0.69772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 2 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16 3 C -0.15 -4.29 8.95 71.98 0.64 -3.65 16 4 C -0.10 -3.29 4.68 30.60 0.14 -3.15 16 5 C 0.07 2.58 3.91 86.30 0.34 2.92 16 6 N -0.46 -19.59 4.71 -704.92 -3.32 -22.91 16 7 C 0.17 8.24 3.81 85.55 0.33 8.56 16 8 C -0.55 -30.85 8.14 25.60 0.21 -30.65 16 9 H 0.04 2.34 6.90 -2.91 -0.02 2.32 16 10 C 0.02 1.43 5.47 84.66 0.46 1.89 16 11 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 12 Si 0.93 44.05 27.42 68.60 1.88 45.93 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.24 -10.24 6.61 99.48 0.66 -9.58 16 16 C 0.46 20.21 5.23 133.38 0.70 20.91 16 17 N -0.56 -23.79 8.58 -187.64 -1.61 -25.40 16 18 C 0.40 15.45 8.17 180.78 1.48 16.93 16 19 Cl 0.05 1.45 29.25 -2.72 -0.08 1.37 16 20 N -0.54 -19.98 10.43 -188.42 -1.96 -21.94 16 21 C 0.30 10.90 8.51 133.74 1.14 12.04 16 22 N -0.56 -14.63 6.22 -307.00 -1.91 -16.55 16 23 H 0.45 7.79 8.96 -92.71 -0.83 6.95 16 24 C 0.47 13.16 9.41 179.67 1.69 14.85 16 25 O -0.43 -7.93 13.63 -86.25 -1.18 -9.10 16 26 N -0.47 -17.83 9.92 -305.79 -3.03 -20.86 16 27 C -0.06 -2.46 6.59 39.61 0.26 -2.20 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.28 6.64 -2.39 -0.02 1.26 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.05 1.83 6.82 -2.39 -0.02 1.81 16 37 H 0.04 1.96 5.08 -2.39 -0.01 1.95 16 38 H 0.08 3.06 7.25 -2.39 -0.02 3.04 16 39 H 0.05 2.48 5.84 -2.39 -0.01 2.46 16 40 H 0.05 2.55 5.71 -2.38 -0.01 2.53 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.44 2.28 9.06 -74.06 -0.67 1.61 16 Total: -1.00 -75.09 357.48 -3.35 -78.43 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.45 Total: 15.34 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 8.01 Total: 33.82 kcal Atomic # 7 Polarization: -154.26 SS G_CDS: -11.54 Total: -165.80 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.18 Total: -9.10 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 17 Polarization: 1.45 SS G_CDS: -0.08 Total: 1.37 kcal Total: -75.09 -3.35 -78.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364175134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.685 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds