Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99828 * 2 1 4 4 C 1.50701 * 109.47131 * 277.35081 * 3 2 1 5 5 O 1.20755 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99883 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47182 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47299 * 300.00132 * 6 4 3 9 9 C 1.53002 * 109.47136 * 59.99992 * 6 4 3 10 10 S 1.65598 * 120.00034 * 180.02562 * 2 1 3 11 11 O 1.42107 * 106.40320 * 165.08354 * 10 2 1 12 12 O 1.42100 * 106.40422 * 32.16940 * 10 2 1 13 13 C 1.76193 * 107.21912 * 278.62693 * 10 2 1 14 14 C 1.37639 * 120.12973 * 116.87430 * 13 10 2 15 15 C 1.38615 * 120.25052 * 180.32393 * 14 13 10 16 16 C 1.38662 * 120.49802 * 359.66530 * 15 14 13 17 17 C 1.37594 * 120.25101 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12753 * 296.56527 * 13 10 2 19 19 C 1.41396 * 120.24301 * 359.97438 * 18 13 10 20 20 H 1.08000 * 119.99921 * 319.48349 * 19 18 13 21 21 C 1.39943 * 119.99957 * 139.48301 * 19 18 13 22 22 N 1.30825 * 119.99687 * 149.54862 * 21 19 18 23 23 Si 1.86796 * 120.00061 * 329.55223 * 21 19 18 24 24 H 1.48503 * 109.47018 * 269.89871 * 23 21 19 25 25 H 1.48502 * 109.47296 * 29.90140 * 23 21 19 26 26 H 1.48502 * 109.47189 * 149.90380 * 23 21 19 27 27 H 1.08997 * 109.47139 * 269.99463 * 1 2 3 28 28 H 1.08994 * 109.47467 * 30.00052 * 1 2 3 29 29 H 1.09006 * 109.47169 * 149.99961 * 1 2 3 30 30 H 1.09000 * 109.47156 * 37.35148 * 3 2 1 31 31 H 1.09001 * 109.47356 * 157.35139 * 3 2 1 32 32 H 1.08998 * 109.46366 * 59.99940 * 7 6 4 33 33 H 1.08995 * 109.46804 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47087 * 300.00100 * 7 6 4 35 35 H 1.08992 * 109.47529 * 59.99753 * 8 6 4 36 36 H 1.09003 * 109.47352 * 180.02562 * 8 6 4 37 37 H 1.09003 * 109.46810 * 299.99770 * 8 6 4 38 38 H 1.09002 * 109.46893 * 59.99998 * 9 6 4 39 39 H 1.09003 * 109.47253 * 179.97438 * 9 6 4 40 40 H 1.08999 * 109.47465 * 299.99823 * 9 6 4 41 41 H 1.07999 * 119.87440 * 0.02562 * 14 13 10 42 42 H 1.07991 * 119.75400 * 179.69168 * 15 14 13 43 43 H 1.07993 * 119.87537 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.13161 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.2911 1.7947 -1.4091 5 8 1.7967 1.1740 -2.3194 6 6 3.0019 3.0952 -1.6823 7 6 2.9538 3.3976 -3.1814 8 6 2.3144 4.2238 -0.9115 9 6 4.4598 2.9841 -1.2315 10 16 2.2929 -1.4341 -0.0006 11 8 3.6344 -1.1228 -0.3514 12 8 1.4943 -2.3583 -0.7268 13 6 2.3351 -2.0128 1.6630 14 6 1.7202 -3.1977 1.9982 15 6 1.7460 -3.6519 3.3075 16 6 2.3961 -2.9237 4.2923 17 6 3.0230 -1.7396 3.9789 18 6 3.0032 -1.2687 2.6529 19 6 3.6445 -0.0536 2.3189 20 1 4.1997 0.0281 1.3962 21 6 3.5597 1.0432 3.1840 22 7 4.5408 1.9066 3.2436 23 14 2.0459 1.2742 4.2537 24 1 1.0438 2.0913 3.5234 25 1 1.4618 -0.0521 4.5780 26 1 2.4287 1.9670 5.5102 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6716 1.9918 0.6235 31 1 3.2004 1.1093 0.3957 32 1 1.9153 3.4766 -3.5028 33 1 3.4675 4.3384 -3.3788 34 1 3.4439 2.5934 -3.7302 35 1 2.3490 4.0082 0.1563 36 1 2.8282 5.1646 -1.1094 37 1 1.2758 4.3030 -1.2327 38 1 4.9496 2.1799 -1.7807 39 1 4.9740 3.9245 -1.4295 40 1 4.4945 2.7684 -0.1636 41 1 1.2114 -3.7732 1.2391 42 1 1.2566 -4.5802 3.5625 43 1 2.4103 -3.2872 5.3091 44 1 3.5291 -1.1742 4.7474 45 1 4.4819 2.6670 3.8429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364191336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -96.113887 kcal Electronic energy + Delta-G solvation = -29703.623468 eV Core-core repulsion = 25813.005991 eV Total energy + Delta-G solvation = -3890.617477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.76781 -37.88339 -36.39334 -35.65784 -35.21724 -34.90818 -33.88575 -30.74934 -30.08227 -28.84062 -27.22583 -26.86853 -25.47658 -24.95633 -22.24947 -21.91653 -21.21528 -18.43660 -18.08015 -17.70900 -17.18740 -16.40943 -15.87638 -15.83129 -15.37305 -14.71554 -14.64910 -14.35078 -14.00910 -13.71155 -13.47706 -13.38765 -13.34761 -13.07209 -12.89724 -12.30771 -12.22568 -12.18494 -12.07838 -11.99552 -11.96615 -11.69252 -11.53748 -11.35453 -11.21547 -11.15240 -10.98100 -10.90576 -10.81928 -10.73946 -10.71640 -10.34353 -10.15366 -9.68222 -9.38464 -9.36173 -8.34124 -8.20969 -7.74919 -7.30359 -4.90726 1.37744 2.04342 2.30449 2.46983 2.87699 2.95564 3.05121 3.70061 3.74882 4.13364 4.24016 4.68763 4.85086 4.94867 4.98650 5.12358 5.20578 5.39407 5.61855 5.68373 5.73683 5.74710 5.80759 5.83196 5.88451 5.94030 5.95493 6.00597 6.07164 6.10069 6.14034 6.15895 6.20375 6.30828 6.41825 6.46719 6.49985 6.60659 6.89037 7.04834 7.06207 7.25443 7.42624 7.54720 7.78154 7.86087 8.08310 8.28683 8.47632 9.67389 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.006273 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.123917 B = 4462.213692 C = 5745.455946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.983 5.983 3 C 0.070 3.930 4 C 0.348 3.652 5 O -0.449 6.449 6 C -0.115 4.115 7 C -0.131 4.131 8 C -0.139 4.139 9 C -0.143 4.143 10 S 2.708 3.292 11 O -0.967 6.967 12 O -0.989 6.989 13 C -0.765 4.765 14 C 0.006 3.994 15 C -0.246 4.246 16 C -0.058 4.058 17 C -0.199 4.199 18 C 0.171 3.829 19 C -0.496 4.496 20 H 0.129 0.871 21 C 0.105 3.895 22 N -0.768 5.768 23 Si 0.863 3.137 24 H -0.261 1.261 25 H -0.227 1.227 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.149 0.851 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 6.219 -1.798 7.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.817 5.817 3 C -0.056 4.056 4 C 0.221 3.779 5 O -0.321 6.321 6 C -0.117 4.117 7 C -0.189 4.189 8 C -0.196 4.196 9 C -0.201 4.201 10 S 2.805 3.195 11 O -0.957 6.957 12 O -0.980 6.980 13 C -0.858 4.858 14 C -0.014 4.014 15 C -0.267 4.267 16 C -0.076 4.076 17 C -0.219 4.219 18 C 0.166 3.834 19 C -0.523 4.523 20 H 0.146 0.854 21 C -0.119 4.119 22 N -0.389 5.389 23 Si 0.685 3.315 24 H -0.186 1.186 25 H -0.150 1.150 26 H -0.199 1.199 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.371 5.751 -2.991 7.818 hybrid contribution -0.659 0.355 1.566 1.736 sum -5.030 6.106 -1.424 8.039 Atomic orbital electron populations 1.21438 0.79150 1.03465 1.01251 1.57000 1.14501 1.20411 1.89777 1.22058 1.01821 0.86723 0.95004 1.25414 0.75145 0.85729 0.91639 1.90328 1.37458 1.56910 1.47419 1.21195 0.97815 0.94954 0.97759 1.21700 1.02177 1.01446 0.93544 1.21842 1.00092 0.97195 1.00463 1.21884 0.92528 1.02432 1.03214 1.01047 0.72713 0.71483 0.74287 1.93489 1.34987 1.83592 1.83674 1.93441 1.71002 1.62041 1.71501 1.30174 1.21197 1.10877 1.23579 1.20405 0.92277 0.92742 0.95953 1.20566 1.10170 1.02339 0.93576 1.20905 0.94618 0.94662 0.97427 1.21339 1.05906 0.97488 0.97183 1.17046 0.84988 0.91062 0.90255 1.20045 1.28708 0.94779 1.08754 0.85426 1.26018 0.96297 0.95205 0.94420 1.69831 1.28129 1.10805 1.30101 0.86881 0.83089 0.81792 0.79763 1.18592 1.14964 1.19895 0.92981 0.91601 0.90329 0.87948 0.83435 0.92453 0.92263 0.92117 0.91406 0.91533 0.92536 0.91911 0.91785 0.90456 0.86887 0.88069 0.88265 0.87739 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.60 59.84 0.63 2.13 16 2 N -0.98 -19.08 2.62 -123.06 -0.32 -19.40 16 3 C 0.07 1.26 4.43 -5.19 -0.02 1.24 16 4 C 0.35 5.99 6.01 -29.03 -0.17 5.81 16 5 O -0.45 -8.83 15.96 6.00 0.10 -8.74 16 6 C -0.12 -1.59 0.87 -155.66 -0.14 -1.73 16 7 C -0.13 -1.66 7.76 37.16 0.29 -1.37 16 8 C -0.14 -1.56 8.26 37.15 0.31 -1.26 16 9 C -0.14 -1.98 8.25 37.16 0.31 -1.68 16 10 S 2.71 61.05 5.06 -107.50 -0.54 60.51 16 11 O -0.97 -23.87 14.73 -57.17 -0.84 -24.71 16 12 O -0.99 -23.29 15.77 -57.17 -0.90 -24.19 16 13 C -0.76 -17.49 5.96 -38.87 -0.23 -17.72 16 14 C 0.01 0.13 9.53 -39.66 -0.38 -0.25 16 15 C -0.25 -4.93 10.05 -39.29 -0.39 -5.32 16 16 C -0.06 -1.16 10.02 -39.66 -0.40 -1.55 16 17 C -0.20 -4.40 7.02 -38.87 -0.27 -4.68 16 18 C 0.17 4.00 4.70 -106.82 -0.50 3.50 16 19 C -0.50 -11.63 6.29 -37.74 -0.24 -11.87 16 20 H 0.13 3.22 4.81 -52.49 -0.25 2.96 16 21 C 0.11 2.30 5.14 -17.34 -0.09 2.21 16 22 N -0.77 -16.82 13.93 55.55 0.77 -16.05 16 23 Si 0.86 16.78 26.86 -169.99 -4.57 12.21 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 H -0.23 -4.61 5.74 56.52 0.32 -4.28 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.08 1.27 7.12 -51.93 -0.37 0.90 16 30 H 0.10 1.59 7.36 -51.93 -0.38 1.21 16 31 H 0.15 2.93 3.63 -51.93 -0.19 2.74 16 32 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.07 0.77 7.28 -51.93 -0.38 0.39 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.16 7.28 -51.93 -0.38 0.79 16 41 H 0.11 2.24 7.33 -52.49 -0.38 1.86 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 2.21 6.98 -52.49 -0.37 1.85 16 45 H 0.29 5.71 8.30 -40.82 -0.34 5.37 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -28.65 369.13 -8.60 -37.25 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.55 Total: 10.07 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: -1.30 Total: -32.52 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.45 Total: -35.45 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -1.65 Total: -57.64 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -4.57 Total: 12.21 kcal Atomic # 16 Polarization: 61.05 SS G_CDS: -0.54 Total: 60.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.65 -8.60 -37.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364191336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.862 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds