Wall clock time and date at job start Sat Apr 11 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99828 * 2 1 4 4 C 1.50701 * 109.47131 * 277.35081 * 3 2 1 5 5 O 1.20755 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99883 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47182 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47299 * 300.00132 * 6 4 3 9 9 C 1.53002 * 109.47136 * 59.99992 * 6 4 3 10 10 S 1.65598 * 120.00034 * 180.02562 * 2 1 3 11 11 O 1.42107 * 106.40320 * 165.08354 * 10 2 1 12 12 O 1.42100 * 106.40422 * 32.16940 * 10 2 1 13 13 C 1.76193 * 107.21912 * 278.62693 * 10 2 1 14 14 C 1.37639 * 120.12973 * 116.87430 * 13 10 2 15 15 C 1.38615 * 120.25052 * 180.32393 * 14 13 10 16 16 C 1.38662 * 120.49802 * 359.66530 * 15 14 13 17 17 C 1.37594 * 120.25101 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12753 * 296.56527 * 13 10 2 19 19 C 1.41396 * 120.24301 * 359.97438 * 18 13 10 20 20 H 1.08000 * 119.99921 * 319.48349 * 19 18 13 21 21 C 1.39943 * 119.99957 * 139.48301 * 19 18 13 22 22 N 1.30825 * 119.99687 * 149.54862 * 21 19 18 23 23 Si 1.86796 * 120.00061 * 329.55223 * 21 19 18 24 24 H 1.48503 * 109.47018 * 269.89871 * 23 21 19 25 25 H 1.48502 * 109.47296 * 29.90140 * 23 21 19 26 26 H 1.48502 * 109.47189 * 149.90380 * 23 21 19 27 27 H 1.08997 * 109.47139 * 269.99463 * 1 2 3 28 28 H 1.08994 * 109.47467 * 30.00052 * 1 2 3 29 29 H 1.09006 * 109.47169 * 149.99961 * 1 2 3 30 30 H 1.09000 * 109.47156 * 37.35148 * 3 2 1 31 31 H 1.09001 * 109.47356 * 157.35139 * 3 2 1 32 32 H 1.08998 * 109.46366 * 59.99940 * 7 6 4 33 33 H 1.08995 * 109.46804 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47087 * 300.00100 * 7 6 4 35 35 H 1.08992 * 109.47529 * 59.99753 * 8 6 4 36 36 H 1.09003 * 109.47352 * 180.02562 * 8 6 4 37 37 H 1.09003 * 109.46810 * 299.99770 * 8 6 4 38 38 H 1.09002 * 109.46893 * 59.99998 * 9 6 4 39 39 H 1.09003 * 109.47253 * 179.97438 * 9 6 4 40 40 H 1.08999 * 109.47465 * 299.99823 * 9 6 4 41 41 H 1.07999 * 119.87440 * 0.02562 * 14 13 10 42 42 H 1.07991 * 119.75400 * 179.69168 * 15 14 13 43 43 H 1.07993 * 119.87537 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.13161 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.2911 1.7947 -1.4091 5 8 1.7967 1.1740 -2.3194 6 6 3.0019 3.0952 -1.6823 7 6 2.9538 3.3976 -3.1814 8 6 2.3144 4.2238 -0.9115 9 6 4.4598 2.9841 -1.2315 10 16 2.2929 -1.4341 -0.0006 11 8 3.6344 -1.1228 -0.3514 12 8 1.4943 -2.3583 -0.7268 13 6 2.3351 -2.0128 1.6630 14 6 1.7202 -3.1977 1.9982 15 6 1.7460 -3.6519 3.3075 16 6 2.3961 -2.9237 4.2923 17 6 3.0230 -1.7396 3.9789 18 6 3.0032 -1.2687 2.6529 19 6 3.6445 -0.0536 2.3189 20 1 4.1997 0.0281 1.3962 21 6 3.5597 1.0432 3.1840 22 7 4.5408 1.9066 3.2436 23 14 2.0459 1.2742 4.2537 24 1 1.0438 2.0913 3.5234 25 1 1.4618 -0.0521 4.5780 26 1 2.4287 1.9670 5.5102 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6716 1.9918 0.6235 31 1 3.2004 1.1093 0.3957 32 1 1.9153 3.4766 -3.5028 33 1 3.4675 4.3384 -3.3788 34 1 3.4439 2.5934 -3.7302 35 1 2.3490 4.0082 0.1563 36 1 2.8282 5.1646 -1.1094 37 1 1.2758 4.3030 -1.2327 38 1 4.9496 2.1799 -1.7807 39 1 4.9740 3.9245 -1.4295 40 1 4.4945 2.7684 -0.1636 41 1 1.2114 -3.7732 1.2391 42 1 1.2566 -4.5802 3.5625 43 1 2.4103 -3.2872 5.3091 44 1 3.5291 -1.1742 4.7474 45 1 4.4819 2.6670 3.8429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364191336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:09 Heat of formation + Delta-G solvation = -113.116638 kcal Electronic energy + Delta-G solvation = -29704.360763 eV Core-core repulsion = 25813.005991 eV Total energy + Delta-G solvation = -3891.354771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10757 -39.53490 -38.21162 -36.93569 -36.74784 -36.58862 -35.54657 -32.41576 -31.73187 -30.17112 -28.20994 -27.95950 -27.15263 -26.33080 -23.67154 -23.43887 -22.88315 -19.95714 -19.65722 -19.24425 -18.81611 -18.01800 -17.38839 -17.23765 -16.93967 -16.19074 -16.03361 -15.90060 -15.52938 -15.16480 -14.99737 -14.75995 -14.69047 -14.55016 -14.24581 -13.92341 -13.70814 -13.65102 -13.33083 -13.21752 -13.06864 -13.04281 -12.99292 -12.95933 -12.70427 -12.68028 -12.57928 -12.49918 -12.27647 -11.94568 -11.87183 -11.81330 -11.75467 -11.22343 -11.02856 -10.89336 -9.94363 -9.67654 -9.42715 -8.95497 -6.63178 -0.31785 0.36708 0.81845 0.94481 1.34452 1.41171 1.50235 2.11878 2.19318 2.48716 2.86313 3.05624 3.29362 3.58187 3.76356 3.84782 3.96218 4.05299 4.22421 4.36266 4.39409 4.50117 4.57286 4.65474 4.71917 4.74182 4.75427 4.79767 4.85548 4.87811 4.93737 4.95349 4.96809 5.00471 5.06168 5.22233 5.26234 5.36394 5.37701 5.41907 5.55260 5.68269 5.78616 5.87974 6.12214 6.33682 6.50954 6.60154 6.75667 8.07575 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.006273 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.123917 B = 4462.213692 C = 5745.455946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.984 5.984 3 C 0.064 3.936 4 C 0.346 3.654 5 O -0.480 6.480 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.136 4.136 9 C -0.141 4.141 10 S 2.710 3.290 11 O -1.001 7.001 12 O -1.008 7.008 13 C -0.779 4.779 14 C -0.011 4.011 15 C -0.241 4.241 16 C -0.054 4.054 17 C -0.219 4.219 18 C 0.154 3.846 19 C -0.512 4.512 20 H 0.099 0.901 21 C 0.088 3.912 22 N -0.790 5.790 23 Si 0.904 3.096 24 H -0.243 1.243 25 H -0.239 1.239 26 H -0.265 1.265 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 7.471 -0.384 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.820 5.820 3 C -0.062 4.062 4 C 0.222 3.778 5 O -0.354 6.354 6 C -0.115 4.115 7 C -0.186 4.186 8 C -0.193 4.193 9 C -0.198 4.198 10 S 2.809 3.191 11 O -0.991 6.991 12 O -0.998 6.998 13 C -0.874 4.874 14 C -0.031 4.031 15 C -0.260 4.260 16 C -0.073 4.073 17 C -0.239 4.239 18 C 0.149 3.851 19 C -0.539 4.539 20 H 0.116 0.884 21 C -0.135 4.135 22 N -0.412 5.412 23 Si 0.723 3.277 24 H -0.167 1.167 25 H -0.162 1.162 26 H -0.189 1.189 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.126 0.874 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.872 7.012 -1.586 9.283 hybrid contribution -0.153 -0.100 1.141 1.155 sum -6.025 6.913 -0.445 9.181 Atomic orbital electron populations 1.21692 0.77197 1.04401 1.02709 1.56787 1.15736 1.19736 1.89752 1.22190 1.01116 0.86578 0.96274 1.25819 0.74519 0.86753 0.90753 1.90314 1.39115 1.58077 1.47934 1.21244 0.97227 0.93877 0.99126 1.21700 1.02432 1.02193 0.92235 1.21866 1.00698 0.96916 0.99805 1.21874 0.92981 1.03259 1.01714 1.00668 0.72108 0.71970 0.74371 1.93440 1.37076 1.84221 1.84367 1.93401 1.71113 1.63151 1.72168 1.30220 1.22049 1.11868 1.23236 1.20693 0.92583 0.92547 0.97261 1.21004 1.09100 1.03212 0.92723 1.21328 0.93058 0.93571 0.99317 1.21486 1.06978 0.98690 0.96707 1.17225 0.85435 0.91233 0.91184 1.19891 1.29606 0.95972 1.08398 0.88357 1.26436 0.97841 0.94377 0.94850 1.69814 1.29166 1.11381 1.30820 0.86273 0.80912 0.81412 0.79099 1.16653 1.16153 1.18896 0.91216 0.89319 0.90805 0.85433 0.85415 0.92384 0.89307 0.94003 0.91648 0.89073 0.91540 0.93903 0.88763 0.92192 0.85965 0.84623 0.84571 0.87436 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.67 10.60 127.77 1.35 4.02 16 2 N -0.98 -38.59 2.62 -543.24 -1.43 -40.02 16 3 C 0.06 2.34 4.43 85.63 0.38 2.72 16 4 C 0.35 12.01 6.01 29.10 0.18 12.18 16 5 O -0.48 -19.24 15.96 -1.44 -0.02 -19.26 16 6 C -0.11 -3.01 0.87 -52.93 -0.05 -3.06 16 7 C -0.13 -3.08 7.76 71.98 0.56 -2.52 16 8 C -0.14 -2.72 8.26 71.98 0.59 -2.12 16 9 C -0.14 -3.89 8.25 71.98 0.59 -3.30 16 10 S 2.71 126.18 5.06 -56.49 -0.29 125.90 16 11 O -1.00 -52.28 14.73 -128.00 -1.89 -54.17 16 12 O -1.01 -48.72 15.77 -128.00 -2.02 -50.73 16 13 C -0.78 -36.00 5.96 22.73 0.14 -35.86 16 14 C -0.01 -0.46 9.53 22.22 0.21 -0.25 16 15 C -0.24 -8.99 10.05 22.46 0.23 -8.77 16 16 C -0.05 -2.05 10.02 22.22 0.22 -1.82 16 17 C -0.22 -9.44 7.02 22.73 0.16 -9.28 16 18 C 0.15 7.24 4.70 -21.29 -0.10 7.14 16 19 C -0.51 -24.58 6.29 23.46 0.15 -24.43 16 20 H 0.10 5.26 4.81 -2.91 -0.01 5.25 16 21 C 0.09 3.85 5.14 85.26 0.44 4.29 16 22 N -0.79 -34.64 13.93 21.83 0.30 -34.34 16 23 Si 0.90 33.13 26.86 68.60 1.84 34.98 16 24 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 25 H -0.24 -9.18 5.74 99.48 0.57 -8.61 16 26 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.36 8.07 -2.39 -0.02 2.34 16 29 H 0.07 2.38 7.12 -2.38 -0.02 2.36 16 30 H 0.13 3.85 7.36 -2.39 -0.02 3.83 16 31 H 0.13 5.31 3.63 -2.39 -0.01 5.31 16 32 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.06 1.35 7.28 -2.39 -0.02 1.33 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.86 7.28 -2.39 -0.02 1.84 16 41 H 0.12 4.79 7.33 -2.91 -0.02 4.77 16 42 H 0.14 4.09 8.06 -2.92 -0.02 4.06 16 43 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.11 4.46 6.98 -2.91 -0.02 4.44 16 45 H 0.30 11.65 8.30 -92.71 -0.77 10.88 16 Total: -1.00 -63.40 369.13 2.42 -60.99 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.86 Total: 37.72 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 5.05 Total: -61.07 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -1.12 Total: -74.35 kcal Atomic # 8 Polarization: -120.23 SS G_CDS: -3.93 Total: -124.16 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 1.84 Total: 34.98 kcal Atomic # 16 Polarization: 126.18 SS G_CDS: -0.29 Total: 125.90 kcal Total: -63.40 2.42 -60.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364191336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.131 kcal (2) G-P(sol) polarization free energy of solvation -63.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds