Wall clock time and date at job start Sat Apr 11 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 S 1.76201 * 120.00103 * 180.27958 * 5 4 3 7 7 O 1.42095 * 104.28066 * 206.07187 * 6 5 4 8 8 O 1.42097 * 104.27597 * 333.93658 * 6 5 4 9 9 C 1.81401 * 104.44771 * 90.00262 * 6 5 4 10 10 C 1.53001 * 109.47270 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47167 * 180.02562 * 10 9 6 12 12 N 1.46900 * 109.47200 * 180.02562 * 11 10 9 13 13 C 1.47476 * 110.99934 * 265.97088 * 12 11 10 14 14 C 1.53510 * 87.93475 * 221.29539 * 13 12 11 15 15 O 1.42906 * 114.16785 * 272.37579 * 14 13 12 16 16 C 1.50700 * 114.34927 * 139.68168 * 14 13 12 17 17 H 1.07996 * 119.99753 * 266.08268 * 16 14 13 18 18 C 1.37873 * 119.99806 * 86.07349 * 16 14 13 19 19 N 1.31510 * 120.00366 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99964 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47373 * 120.00233 * 20 18 16 23 23 H 1.48497 * 109.47156 * 240.00405 * 20 18 16 24 24 C 1.47481 * 111.00215 * 169.99721 * 12 11 10 25 25 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 26 26 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 27 27 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 28 28 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 29 29 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 30 30 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 32 32 H 1.09002 * 109.47170 * 300.00193 * 9 6 5 33 33 H 1.09004 * 109.46881 * 60.00341 * 9 6 5 34 34 H 1.09002 * 109.47040 * 300.00099 * 10 9 6 35 35 H 1.08995 * 109.46927 * 60.00040 * 10 9 6 36 36 H 1.09002 * 109.46956 * 299.99826 * 11 10 9 37 37 H 1.08995 * 109.47429 * 60.00023 * 11 10 9 38 38 H 1.09004 * 113.47966 * 336.06032 * 13 12 11 39 39 H 1.09006 * 113.48063 * 106.52642 * 13 12 11 40 40 H 0.96701 * 113.99929 * 273.83515 * 15 14 13 41 41 H 0.96999 * 120.00189 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.47313 * 253.46704 * 24 12 11 43 43 H 1.08995 * 113.47400 * 23.87819 * 24 12 11 44 44 H 1.07997 * 120.00460 * 180.02562 * 25 5 4 45 45 H 1.08001 * 120.00310 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 16 6.0337 -0.0002 0.0019 7 8 6.3845 -1.2399 -0.5974 8 8 6.3845 1.2340 -0.6085 9 6 6.4852 0.0077 1.7588 10 6 8.0092 0.0089 1.8938 11 6 8.3900 0.0149 3.3756 12 7 9.8533 0.0166 3.5051 13 6 10.3724 -1.3558 3.6534 14 6 11.3378 -0.8162 4.7180 15 8 12.5728 -0.3251 4.1927 16 6 11.5160 -1.7200 5.9106 17 1 10.9096 -1.5761 6.7925 18 6 12.4529 -2.7309 5.8756 19 7 13.1916 -2.9059 4.8017 20 14 12.6733 -3.8518 7.3536 21 1 11.7287 -3.4482 8.4261 22 1 12.3999 -5.2559 6.9551 23 1 14.0668 -3.7418 7.8549 24 6 10.2601 0.2615 4.9015 25 6 3.5805 -1.1972 0.0063 26 6 2.1981 -1.1972 0.0059 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6582 2.1325 -0.0004 31 1 4.1206 2.1323 -0.0089 32 1 6.0780 0.8999 2.2346 33 1 6.0779 -0.8801 2.2426 34 1 8.4168 -0.8831 1.4179 35 1 8.4161 0.8968 1.4101 36 1 7.9825 0.9067 3.8518 37 1 7.9832 -0.8733 3.8589 38 1 9.6380 -2.0575 4.0490 39 1 10.8746 -1.7289 2.7608 40 1 13.2499 -1.0060 4.0782 41 1 13.8505 -3.6173 4.7770 42 1 10.6671 1.2591 5.0665 43 1 9.4953 -0.0075 5.6300 44 1 4.1204 -2.1325 0.0113 45 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364393837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:13 Heat of formation + Delta-G solvation = -62.233437 kcal Electronic energy + Delta-G solvation = -26439.244459 eV Core-core repulsion = 22550.096149 eV Total energy + Delta-G solvation = -3889.148310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72482 -39.23187 -37.20998 -36.05209 -35.15214 -33.47935 -33.42809 -32.05426 -31.45287 -28.65332 -27.75185 -25.98690 -24.93315 -23.31091 -23.27689 -22.22458 -20.97307 -19.21953 -18.64171 -18.03419 -17.28702 -16.47792 -16.37115 -15.74842 -15.68167 -15.15617 -14.96778 -14.83577 -14.72378 -14.33865 -14.05827 -13.95591 -13.77368 -13.55790 -12.85688 -12.81543 -12.71052 -12.45407 -12.31461 -12.16662 -12.10276 -11.93717 -11.73370 -11.56443 -11.53927 -11.38605 -11.10934 -11.01697 -10.91200 -10.55650 -10.43428 -10.18887 -9.94734 -9.48205 -9.44925 -9.28334 -8.66715 -8.22451 -7.92231 -6.28810 -4.38782 -0.13112 0.44982 0.89945 2.72569 3.03635 3.16968 3.25940 3.29276 3.71923 3.94266 4.22690 4.29764 4.30148 4.40349 4.51030 4.58843 4.86310 4.89712 4.92411 5.01260 5.04254 5.14006 5.18273 5.19569 5.31278 5.47834 5.54348 5.56130 5.70906 5.75116 5.79659 5.92293 5.92794 6.01160 6.01412 6.21720 6.33108 6.38347 6.43636 6.67043 7.03355 7.12416 7.33424 7.74800 7.91822 8.00459 8.63753 9.31585 9.67910 10.77287 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.002094 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.122219 B =13367.478169 C =13846.235748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.144 4.144 4 C -0.020 4.020 5 C -0.665 4.665 6 S 2.496 3.504 7 O -0.936 6.936 8 O -0.936 6.936 9 C -0.598 4.598 10 C -0.105 4.105 11 C 0.026 3.974 12 N -0.474 5.474 13 C -0.024 4.024 14 C 0.247 3.753 15 O -0.570 6.570 16 C -0.534 4.534 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.004 3.996 25 C -0.019 4.019 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.390 0.610 41 H 0.271 0.729 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.143 0.857 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.399 4.712 -7.818 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.039 4.039 5 C -0.751 4.751 6 S 2.676 3.324 7 O -0.933 6.933 8 O -0.934 6.934 9 C -0.729 4.729 10 C -0.144 4.144 11 C -0.104 4.104 12 N -0.197 5.197 13 C -0.154 4.154 14 C 0.205 3.795 15 O -0.382 6.382 16 C -0.573 4.573 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.125 4.125 25 C -0.038 4.038 26 C -0.162 4.162 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.161 0.839 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.868 5.599 -9.187 26.181 hybrid contribution -0.860 -1.750 1.925 2.740 sum -24.728 3.850 -7.262 26.058 Atomic orbital electron populations 1.20942 0.90595 1.03458 1.03014 1.20290 0.96513 0.93374 0.93355 1.21192 0.94202 0.98011 1.02872 1.20992 0.94709 0.96809 0.91348 1.30693 1.26475 0.99412 1.18527 1.05518 0.73943 0.74831 0.78069 1.93575 1.81836 1.44242 1.73622 1.93567 1.81874 1.44710 1.73209 1.30282 1.07090 1.11964 1.23560 1.21247 0.88359 1.04538 1.00248 1.22581 0.92623 1.00935 0.94247 1.68867 1.07931 1.19434 1.23426 1.24802 0.99548 0.89298 1.01707 1.19364 0.82023 0.88539 0.89596 1.86031 1.24755 1.41000 1.86446 1.21605 1.20757 1.13794 1.01109 0.91527 1.25078 0.94841 0.96971 0.96337 1.69299 1.23510 1.33191 1.27760 0.86339 0.78235 0.80033 0.82205 1.19618 1.20741 1.20639 1.24056 0.98033 1.01270 0.89100 1.21006 0.94726 0.96854 0.91236 1.21201 0.94207 0.98036 1.02792 0.90319 0.90940 0.90932 0.85044 0.83965 0.84684 0.84714 0.90082 0.89497 0.91472 0.93734 0.92174 0.91143 0.75382 0.91817 0.90989 0.91829 0.83936 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.01 36.00 0.36 -0.18 16 2 C -0.04 -0.26 5.88 -104.63 -0.62 -0.87 16 3 C -0.14 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.02 -0.18 9.47 -39.58 -0.37 -0.55 16 5 C -0.67 -6.61 5.66 -39.58 -0.22 -6.83 16 6 S 2.50 28.40 5.16 -107.50 -0.55 27.84 16 7 O -0.94 -13.54 17.13 -57.54 -0.99 -14.52 16 8 O -0.94 -13.19 17.13 -57.54 -0.99 -14.18 16 9 C -0.60 -5.81 5.98 37.16 0.22 -5.58 16 10 C -0.10 -1.44 5.55 -26.73 -0.15 -1.59 16 11 C 0.03 0.42 4.82 -3.82 -0.02 0.40 16 12 N -0.47 -9.75 6.33 -244.62 -1.55 -11.30 16 13 C -0.02 -0.56 7.13 -7.55 -0.05 -0.61 16 14 C 0.25 6.23 1.56 -91.24 -0.14 6.08 16 15 O -0.57 -15.52 13.53 -35.23 -0.48 -16.00 16 16 C -0.53 -14.10 8.70 -34.44 -0.30 -14.40 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 19 N -0.90 -23.97 11.02 55.43 0.61 -23.36 16 20 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 C 0.00 0.09 7.09 -7.54 -0.05 0.04 16 25 C -0.02 -0.18 9.47 -39.58 -0.37 -0.55 16 26 C -0.14 -1.12 9.70 -39.58 -0.38 -1.50 16 27 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 28 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.15 16 30 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 31 H 0.14 1.10 7.57 -52.49 -0.40 0.70 16 32 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.13 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.04 0.69 7.30 -51.93 -0.38 0.31 16 38 H 0.06 1.33 7.38 -51.93 -0.38 0.94 16 39 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.39 10.79 6.33 45.56 0.29 11.08 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.06 1.26 7.87 -51.93 -0.41 0.86 16 44 H 0.14 1.16 7.57 -52.49 -0.40 0.77 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -33.51 384.78 -12.04 -45.55 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.29 Total: 10.94 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -2.59 Total: -25.92 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: -0.94 Total: -34.66 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -2.45 Total: -44.70 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 28.40 SS G_CDS: -0.55 Total: 27.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.51 -12.04 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364393837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.685 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds