Wall clock time and date at job start Sat Apr 11 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 S 1.76201 * 120.00103 * 180.27958 * 5 4 3 7 7 O 1.42095 * 104.28066 * 206.07187 * 6 5 4 8 8 O 1.42097 * 104.27597 * 333.93658 * 6 5 4 9 9 C 1.81401 * 104.44771 * 90.00262 * 6 5 4 10 10 C 1.53001 * 109.47270 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47167 * 180.02562 * 10 9 6 12 12 N 1.46900 * 109.47200 * 180.02562 * 11 10 9 13 13 C 1.47476 * 110.99934 * 265.97088 * 12 11 10 14 14 C 1.53510 * 87.93475 * 221.29539 * 13 12 11 15 15 O 1.42906 * 114.16785 * 272.37579 * 14 13 12 16 16 C 1.50700 * 114.34927 * 139.68168 * 14 13 12 17 17 H 1.07996 * 119.99753 * 266.08268 * 16 14 13 18 18 C 1.37873 * 119.99806 * 86.07349 * 16 14 13 19 19 N 1.31510 * 120.00366 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99964 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47373 * 120.00233 * 20 18 16 23 23 H 1.48497 * 109.47156 * 240.00405 * 20 18 16 24 24 C 1.47481 * 111.00215 * 169.99721 * 12 11 10 25 25 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 26 26 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 27 27 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 28 28 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 29 29 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 30 30 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 32 32 H 1.09002 * 109.47170 * 300.00193 * 9 6 5 33 33 H 1.09004 * 109.46881 * 60.00341 * 9 6 5 34 34 H 1.09002 * 109.47040 * 300.00099 * 10 9 6 35 35 H 1.08995 * 109.46927 * 60.00040 * 10 9 6 36 36 H 1.09002 * 109.46956 * 299.99826 * 11 10 9 37 37 H 1.08995 * 109.47429 * 60.00023 * 11 10 9 38 38 H 1.09004 * 113.47966 * 336.06032 * 13 12 11 39 39 H 1.09006 * 113.48063 * 106.52642 * 13 12 11 40 40 H 0.96701 * 113.99929 * 273.83515 * 15 14 13 41 41 H 0.96999 * 120.00189 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.47313 * 253.46704 * 24 12 11 43 43 H 1.08995 * 113.47400 * 23.87819 * 24 12 11 44 44 H 1.07997 * 120.00460 * 180.02562 * 25 5 4 45 45 H 1.08001 * 120.00310 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 16 6.0337 -0.0002 0.0019 7 8 6.3845 -1.2399 -0.5974 8 8 6.3845 1.2340 -0.6085 9 6 6.4852 0.0077 1.7588 10 6 8.0092 0.0089 1.8938 11 6 8.3900 0.0149 3.3756 12 7 9.8533 0.0166 3.5051 13 6 10.3724 -1.3558 3.6534 14 6 11.3378 -0.8162 4.7180 15 8 12.5728 -0.3251 4.1927 16 6 11.5160 -1.7200 5.9106 17 1 10.9096 -1.5761 6.7925 18 6 12.4529 -2.7309 5.8756 19 7 13.1916 -2.9059 4.8017 20 14 12.6733 -3.8518 7.3536 21 1 11.7287 -3.4482 8.4261 22 1 12.3999 -5.2559 6.9551 23 1 14.0668 -3.7418 7.8549 24 6 10.2601 0.2615 4.9015 25 6 3.5805 -1.1972 0.0063 26 6 2.1981 -1.1972 0.0059 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6582 2.1325 -0.0004 31 1 4.1206 2.1323 -0.0089 32 1 6.0780 0.8999 2.2346 33 1 6.0779 -0.8801 2.2426 34 1 8.4168 -0.8831 1.4179 35 1 8.4161 0.8968 1.4101 36 1 7.9825 0.9067 3.8518 37 1 7.9832 -0.8733 3.8589 38 1 9.6380 -2.0575 4.0490 39 1 10.8746 -1.7289 2.7608 40 1 13.2499 -1.0060 4.0782 41 1 13.8505 -3.6173 4.7770 42 1 10.6671 1.2591 5.0665 43 1 9.4953 -0.0075 5.6300 44 1 4.1204 -2.1325 0.0113 45 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364393837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:12 Heat of formation + Delta-G solvation = -88.219310 kcal Electronic energy + Delta-G solvation = -26440.371291 eV Core-core repulsion = 22550.096149 eV Total energy + Delta-G solvation = -3890.275142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95037 -40.30614 -38.20721 -37.05673 -36.74436 -34.92094 -34.08085 -34.00033 -32.04554 -30.16110 -28.27858 -27.65000 -26.69706 -24.74790 -23.87080 -22.93242 -22.20876 -20.51907 -20.03470 -19.27913 -18.77838 -17.43460 -17.36486 -17.12264 -16.63248 -16.51956 -16.31305 -15.93723 -15.74474 -15.41349 -15.31090 -15.00184 -14.74925 -14.52634 -14.23833 -13.92090 -13.45975 -13.38823 -13.26081 -13.22972 -13.12853 -13.09604 -13.07132 -13.02313 -12.94237 -12.69816 -12.50464 -12.23170 -12.15028 -12.10711 -11.84447 -11.59386 -11.37144 -11.12299 -10.63434 -10.08481 -10.05996 -10.05878 -9.67035 -8.25141 -6.43069 -0.98738 -0.20549 0.29526 1.41668 1.44777 1.55957 1.90518 2.37037 2.39502 2.86025 2.95967 3.11953 3.18561 3.65755 3.70313 3.80950 3.85724 3.91658 3.94786 4.09057 4.24121 4.28903 4.34838 4.35246 4.44940 4.52767 4.59929 4.66515 4.69237 4.70455 4.79252 4.86135 4.93293 5.00313 5.07486 5.09022 5.09312 5.16818 5.23915 5.39533 5.47854 5.49349 5.75800 5.87374 5.96905 6.34469 6.63758 7.30311 7.56168 8.80315 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.002094 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.122219 B =13367.478169 C =13846.235748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.036 4.036 3 C -0.148 4.148 4 C -0.035 4.035 5 C -0.670 4.670 6 S 2.501 3.499 7 O -0.976 6.976 8 O -0.972 6.972 9 C -0.581 4.581 10 C -0.111 4.111 11 C 0.023 3.977 12 N -0.483 5.483 13 C -0.014 4.014 14 C 0.213 3.787 15 O -0.585 6.585 16 C -0.554 4.554 17 H 0.069 0.931 18 C 0.023 3.977 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.280 1.280 24 C 0.015 3.985 25 C -0.037 4.037 26 C -0.150 4.150 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.383 0.617 41 H 0.274 0.726 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.145 0.855 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.478 4.873 -6.502 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.167 4.167 4 C -0.054 4.054 5 C -0.759 4.759 6 S 2.687 3.313 7 O -0.974 6.974 8 O -0.969 6.969 9 C -0.713 4.713 10 C -0.150 4.150 11 C -0.107 4.107 12 N -0.206 5.206 13 C -0.144 4.144 14 C 0.172 3.828 15 O -0.397 6.397 16 C -0.592 4.592 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.563 5.563 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.206 1.206 24 C -0.114 4.114 25 C -0.056 4.056 26 C -0.168 4.168 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.238 0.762 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.163 0.837 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.937 5.775 -7.893 28.657 hybrid contribution 0.004 -1.759 1.496 2.309 sum -26.933 4.016 -6.397 27.972 Atomic orbital electron populations 1.21016 0.88393 1.04479 1.04006 1.20701 0.98175 0.92965 0.91783 1.21539 0.93740 0.99386 1.02046 1.21226 0.95665 0.96732 0.91746 1.30280 1.24683 1.00328 1.20631 1.04951 0.74490 0.73257 0.78564 1.93519 1.83051 1.45552 1.75251 1.93515 1.82995 1.45671 1.74709 1.30130 1.04223 1.14948 1.21990 1.21223 0.91210 1.03768 0.98828 1.22710 0.89550 1.02639 0.95778 1.68762 1.11542 1.17464 1.22805 1.24573 0.99257 0.90651 0.99883 1.19808 0.82056 0.90651 0.90247 1.86012 1.25658 1.41209 1.86808 1.21877 1.21283 1.14384 1.01638 0.91286 1.25876 0.94552 0.98337 0.98914 1.69385 1.23869 1.33687 1.29335 0.85314 0.78068 0.78059 0.78994 1.18870 1.20344 1.20565 1.23966 0.97156 1.00026 0.90223 1.21205 0.95709 0.96763 0.91942 1.21526 0.93714 0.99437 1.02167 0.89154 0.89884 0.90038 0.82639 0.83289 0.81417 0.82192 0.91582 0.89958 0.88902 0.92711 0.91561 0.93457 0.76201 0.91615 0.91069 0.89841 0.83707 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 71.24 0.71 0.03 16 2 C -0.04 -0.43 5.88 -19.87 -0.12 -0.55 16 3 C -0.15 -1.92 9.70 22.27 0.22 -1.70 16 4 C -0.03 -0.58 9.47 22.27 0.21 -0.37 16 5 C -0.67 -12.78 5.66 22.27 0.13 -12.66 16 6 S 2.50 56.92 5.16 -56.49 -0.29 56.63 16 7 O -0.98 -29.23 17.13 -127.65 -2.19 -31.42 16 8 O -0.97 -27.88 17.13 -127.65 -2.19 -30.06 16 9 C -0.58 -10.14 5.98 71.98 0.43 -9.71 16 10 C -0.11 -2.95 5.55 30.59 0.17 -2.78 16 11 C 0.02 0.68 4.82 86.30 0.42 1.10 16 12 N -0.48 -19.54 6.33 -928.23 -5.88 -25.41 16 13 C -0.01 -0.65 7.13 83.58 0.60 -0.05 16 14 C 0.21 10.87 1.56 -11.19 -0.02 10.85 16 15 O -0.58 -32.71 13.53 -148.98 -2.02 -34.73 16 16 C -0.55 -29.18 8.70 25.60 0.22 -28.96 16 17 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.02 1.18 5.39 84.65 0.46 1.64 16 19 N -0.92 -50.01 11.02 21.45 0.24 -49.78 16 20 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.01 0.63 7.09 83.58 0.59 1.23 16 25 C -0.04 -0.65 9.47 22.27 0.21 -0.44 16 26 C -0.15 -2.04 9.70 22.27 0.22 -1.82 16 27 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.08 0.31 8.09 -2.39 -0.02 0.29 16 29 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 30 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.15 2.15 7.57 -2.91 -0.02 2.13 16 32 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.30 8.08 -2.39 -0.02 2.29 16 37 H 0.05 1.54 7.30 -2.39 -0.02 1.52 16 38 H 0.07 2.91 7.38 -2.38 -0.02 2.90 16 39 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.38 21.99 6.33 -74.06 -0.47 21.52 16 41 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.08 3.14 7.87 -2.39 -0.02 3.12 16 44 H 0.15 2.33 7.57 -2.91 -0.02 2.31 16 45 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -73.32 384.78 -5.33 -78.65 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.52 Total: 37.16 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 4.44 Total: -44.20 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -5.64 Total: -75.19 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -6.39 Total: -96.21 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.29 Total: 56.63 kcal Total: -73.32 -5.33 -78.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364393837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.567 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds