Wall clock time and date at job start Sat Apr 11 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.50705 * 109.47044 * 240.00443 * 2 1 3 5 5 H 1.08003 * 119.99927 * 237.00541 * 4 2 1 6 6 C 1.37875 * 120.00399 * 57.00343 * 4 2 1 7 7 N 1.31519 * 119.99702 * 5.54418 * 6 4 2 8 8 Si 1.86799 * 120.00288 * 185.54512 * 6 4 2 9 9 H 1.48500 * 109.47136 * 85.00132 * 8 6 4 10 10 H 1.48503 * 109.47074 * 205.00165 * 8 6 4 11 11 H 1.48497 * 109.46996 * 325.00073 * 8 6 4 12 12 C 1.52993 * 109.47476 * 120.00381 * 2 1 3 13 13 N 1.46505 * 109.47061 * 300.00277 * 12 2 1 14 14 C 1.34774 * 120.00189 * 180.02562 * 13 12 2 15 15 O 1.21560 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.47837 * 120.00132 * 179.97438 * 14 13 12 17 17 C 1.39582 * 120.14800 * 179.97438 * 16 14 13 18 18 C 1.37952 * 119.85268 * 180.27640 * 17 16 14 19 19 C 1.38366 * 120.14826 * 359.49028 * 18 17 16 20 20 C 1.50696 * 119.85544 * 180.25548 * 19 18 17 21 21 S 1.81396 * 109.47405 * 270.25495 * 20 19 18 22 22 C 1.81402 * 101.92301 * 179.97438 * 21 20 19 23 23 O 1.42104 * 108.57666 * 294.48894 * 21 20 19 24 24 O 1.42097 * 108.57885 * 65.50966 * 21 20 19 25 25 C 1.38357 * 120.28630 * 0.51197 * 19 18 17 26 26 C 1.37952 * 120.14813 * 359.74210 * 25 19 18 27 27 H 1.09002 * 109.47230 * 293.93246 * 1 2 3 28 28 H 1.09008 * 109.47237 * 53.93161 * 1 2 3 29 29 H 1.09007 * 109.47462 * 173.93146 * 1 2 3 30 30 H 1.09004 * 109.47162 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47144 * 300.00083 * 3 2 1 32 32 H 1.08998 * 109.47277 * 60.00240 * 3 2 1 33 33 H 0.96998 * 119.99882 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47496 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47041 * 59.99711 * 12 2 1 36 36 H 0.97004 * 119.99694 * 359.97438 * 13 12 2 37 37 H 1.08002 * 120.06899 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.92355 * 179.72301 * 18 17 16 39 39 H 1.09005 * 109.46709 * 30.25570 * 20 19 18 40 40 H 1.08995 * 109.47230 * 150.24900 * 20 19 18 41 41 H 1.09000 * 109.46917 * 60.00097 * 22 21 20 42 42 H 1.08996 * 109.47202 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46992 * 299.99862 * 22 21 20 44 44 H 1.08007 * 119.91982 * 179.76866 * 25 19 18 45 45 H 1.08003 * 120.07162 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6925 -1.5594 -1.1323 6 6 1.6490 -0.2764 -2.4819 7 7 0.9350 0.8209 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1617 -2.3360 -4.2324 10 1 2.1706 -0.3437 -5.1777 11 1 3.4930 -1.8327 -3.7939 12 6 2.0400 -0.7213 1.2491 13 7 1.5516 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5766 -1.4793 3.7809 16 6 1.3853 0.2062 4.8766 17 6 1.7207 -0.2681 6.1458 18 6 1.2532 0.3838 7.2681 19 6 0.4623 1.5116 7.1377 20 6 -0.0400 2.2219 8.3682 21 16 -1.6380 1.5196 8.8620 22 6 -2.0424 2.5043 10.3308 23 8 -2.5912 1.8059 7.8477 24 8 -1.4354 0.1715 9.2630 25 6 0.1262 1.9869 5.8826 26 6 0.5827 1.3413 4.7521 27 1 -0.3634 0.4169 0.9393 28 1 -0.3634 0.6051 -0.8307 29 1 -0.3634 -1.0219 -0.1086 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6657 1.1265 -3.4875 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7489 1.2491 36 1 0.9942 0.7581 2.3564 37 1 2.3408 -1.1463 6.2489 38 1 1.5083 0.0152 8.2507 39 1 0.6780 2.0965 9.1787 40 1 -0.1611 3.2832 8.1511 41 1 -2.1045 3.5574 10.0563 42 1 -3.0004 2.1774 10.7349 43 1 -1.2654 2.3702 11.0833 44 1 -0.4947 2.8656 5.7877 45 1 0.3193 1.7131 3.7730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436634822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:25 Heat of formation + Delta-G solvation = -84.789280 kcal Electronic energy + Delta-G solvation = -26780.131788 eV Core-core repulsion = 22890.005383 eV Total energy + Delta-G solvation = -3890.126405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15851 -38.54407 -37.36109 -36.39545 -36.34501 -33.65650 -33.12126 -31.29721 -30.73674 -30.18214 -28.14151 -25.74137 -25.61687 -24.91086 -22.95598 -22.53689 -20.19457 -19.30297 -18.88708 -17.89384 -17.12191 -16.80499 -16.54509 -15.95111 -15.67650 -15.37993 -14.96441 -14.80624 -14.67031 -14.39868 -13.85441 -13.77535 -13.71881 -13.26688 -13.17351 -13.09067 -12.88817 -12.63864 -12.43673 -12.35475 -12.18841 -12.10804 -11.57301 -11.42584 -11.28119 -11.18600 -11.17631 -10.86438 -10.69858 -10.39259 -10.21952 -9.69136 -9.63917 -9.29430 -9.19724 -8.99208 -8.80509 -8.46130 -8.31638 -6.02924 -4.11645 -0.59645 0.73280 1.17646 2.27320 2.94054 3.21013 3.29465 3.35860 3.38983 3.50791 3.63521 3.85145 3.97267 4.12149 4.27105 4.40467 4.49501 4.70135 4.74522 4.90397 5.00156 5.10878 5.16509 5.24359 5.32581 5.56561 5.78503 6.06106 6.12183 6.16738 6.28659 6.31148 6.49527 6.63051 6.75569 6.80212 6.91852 6.98197 7.00641 7.34000 7.54692 7.69627 7.98439 7.99280 8.13018 8.37021 8.61399 8.88497 9.53772 10.99225 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.002143 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.253203 B =13060.215110 C =13585.412222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.544 3.456 15 O -0.546 6.546 16 C -0.112 4.112 17 C -0.062 4.062 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.565 4.565 21 S 2.414 3.586 22 C -0.660 4.660 23 O -0.929 6.929 24 O -0.931 6.931 25 C -0.108 4.108 26 C -0.086 4.086 27 H 0.006 0.994 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 8.647 25.790 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.330 3.670 15 O -0.425 6.425 16 C -0.116 4.116 17 C -0.081 4.081 18 C -0.129 4.129 19 C -0.082 4.082 20 C -0.692 4.692 21 S 2.596 3.404 22 C -0.808 4.808 23 O -0.926 6.926 24 O -0.928 6.928 25 C -0.127 4.127 26 C -0.104 4.104 27 H 0.025 0.975 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.385 7.391 25.310 26.729 hybrid contribution 0.405 0.673 -0.444 0.903 sum -3.981 8.064 24.866 26.442 Atomic orbital electron populations 1.21821 0.97656 1.00310 0.98989 1.18372 0.92833 0.92779 0.90582 1.21858 0.98666 0.98310 1.00012 1.20950 1.29377 1.14351 0.89864 0.92390 1.24880 0.94981 0.94785 0.98826 1.69823 1.37824 1.21387 1.23314 0.86586 0.79034 0.79908 0.82327 1.20612 1.21351 1.19979 1.21776 0.98292 0.95957 0.83145 1.46285 1.52082 1.31618 1.05909 1.18237 0.80941 0.84333 0.83471 1.90745 1.38567 1.26309 1.86909 1.20317 0.99926 0.96813 0.94544 1.21300 0.97209 0.99059 0.90512 1.21088 0.97475 0.94896 0.99467 1.19007 1.00435 0.96503 0.92304 1.29358 1.22428 1.11772 1.05647 1.08274 0.77655 0.77045 0.77437 1.30325 1.12543 1.16336 1.21639 1.93624 1.57940 1.85665 1.55407 1.93616 1.85531 1.30706 1.82924 1.21055 0.99814 1.00517 0.91266 1.21415 0.95548 0.94143 0.99321 0.97502 0.89914 0.95054 0.95375 0.89497 0.97659 0.92992 0.92444 0.92385 0.76553 0.83994 0.84685 0.83914 0.83869 0.85271 0.85141 0.85303 0.84607 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.03 37.15 0.30 -2.63 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.92 8.11 37.16 0.30 -2.62 16 4 C -0.51 -13.25 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 7 N -0.89 -23.53 9.45 55.43 0.52 -23.00 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.71 -12.87 4.86 -61.26 -0.30 -13.17 16 14 C 0.54 9.86 7.77 -12.33 -0.10 9.77 16 15 O -0.55 -11.63 16.35 5.31 0.09 -11.54 16 16 C -0.11 -1.64 5.87 -104.97 -0.62 -2.26 16 17 C -0.06 -0.81 9.60 -39.19 -0.38 -1.18 16 18 C -0.11 -1.15 9.68 -39.64 -0.38 -1.53 16 19 C -0.08 -0.76 5.15 -104.53 -0.54 -1.30 16 20 C -0.57 -2.66 5.92 36.00 0.21 -2.45 16 21 S 2.41 15.72 5.34 -107.50 -0.57 15.15 16 22 C -0.66 -1.45 10.62 101.05 1.07 -0.37 16 23 O -0.93 -9.94 18.10 -57.83 -1.05 -10.98 16 24 O -0.93 -9.83 18.10 -57.83 -1.05 -10.88 16 25 C -0.11 -1.11 9.68 -39.64 -0.38 -1.49 16 26 C -0.09 -1.05 9.54 -39.19 -0.37 -1.43 16 27 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 28 H 0.08 2.04 6.25 -51.92 -0.32 1.71 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.15 6.10 -51.93 -0.32 1.83 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 6.46 4.19 -40.82 -0.17 6.29 16 37 H 0.14 1.83 7.65 -52.49 -0.40 1.43 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.25 8.08 -51.92 -0.42 -0.17 16 40 H 0.14 0.26 8.08 -51.93 -0.42 -0.16 16 41 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 42 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.13 0.02 8.14 -51.92 -0.42 -0.40 16 44 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 45 H 0.14 1.49 6.41 -52.48 -0.34 1.15 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -35.68 380.68 -9.42 -45.11 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.44 Total: 3.23 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.35 Total: -15.39 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.23 Total: -36.17 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -2.01 Total: -33.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 15.72 SS G_CDS: -0.57 Total: 15.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.68 -9.42 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436634822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.683 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds