Wall clock time and date at job start Sat Apr 11 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.50705 * 109.47044 * 240.00443 * 2 1 3 5 5 H 1.08003 * 119.99927 * 237.00541 * 4 2 1 6 6 C 1.37875 * 120.00399 * 57.00343 * 4 2 1 7 7 N 1.31519 * 119.99702 * 5.54418 * 6 4 2 8 8 Si 1.86799 * 120.00288 * 185.54512 * 6 4 2 9 9 H 1.48500 * 109.47136 * 85.00132 * 8 6 4 10 10 H 1.48503 * 109.47074 * 205.00165 * 8 6 4 11 11 H 1.48497 * 109.46996 * 325.00073 * 8 6 4 12 12 C 1.52993 * 109.47476 * 120.00381 * 2 1 3 13 13 N 1.46505 * 109.47061 * 300.00277 * 12 2 1 14 14 C 1.34774 * 120.00189 * 180.02562 * 13 12 2 15 15 O 1.21560 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.47837 * 120.00132 * 179.97438 * 14 13 12 17 17 C 1.39582 * 120.14800 * 179.97438 * 16 14 13 18 18 C 1.37952 * 119.85268 * 180.27640 * 17 16 14 19 19 C 1.38366 * 120.14826 * 359.49028 * 18 17 16 20 20 C 1.50696 * 119.85544 * 180.25548 * 19 18 17 21 21 S 1.81396 * 109.47405 * 270.25495 * 20 19 18 22 22 C 1.81402 * 101.92301 * 179.97438 * 21 20 19 23 23 O 1.42104 * 108.57666 * 294.48894 * 21 20 19 24 24 O 1.42097 * 108.57885 * 65.50966 * 21 20 19 25 25 C 1.38357 * 120.28630 * 0.51197 * 19 18 17 26 26 C 1.37952 * 120.14813 * 359.74210 * 25 19 18 27 27 H 1.09002 * 109.47230 * 293.93246 * 1 2 3 28 28 H 1.09008 * 109.47237 * 53.93161 * 1 2 3 29 29 H 1.09007 * 109.47462 * 173.93146 * 1 2 3 30 30 H 1.09004 * 109.47162 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47144 * 300.00083 * 3 2 1 32 32 H 1.08998 * 109.47277 * 60.00240 * 3 2 1 33 33 H 0.96998 * 119.99882 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47496 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47041 * 59.99711 * 12 2 1 36 36 H 0.97004 * 119.99694 * 359.97438 * 13 12 2 37 37 H 1.08002 * 120.06899 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.92355 * 179.72301 * 18 17 16 39 39 H 1.09005 * 109.46709 * 30.25570 * 20 19 18 40 40 H 1.08995 * 109.47230 * 150.24900 * 20 19 18 41 41 H 1.09000 * 109.46917 * 60.00097 * 22 21 20 42 42 H 1.08996 * 109.47202 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46992 * 299.99862 * 22 21 20 44 44 H 1.08007 * 119.91982 * 179.76866 * 25 19 18 45 45 H 1.08003 * 120.07162 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6925 -1.5594 -1.1323 6 6 1.6490 -0.2764 -2.4819 7 7 0.9350 0.8209 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1617 -2.3360 -4.2324 10 1 2.1706 -0.3437 -5.1777 11 1 3.4930 -1.8327 -3.7939 12 6 2.0400 -0.7213 1.2491 13 7 1.5516 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5766 -1.4793 3.7809 16 6 1.3853 0.2062 4.8766 17 6 1.7207 -0.2681 6.1458 18 6 1.2532 0.3838 7.2681 19 6 0.4623 1.5116 7.1377 20 6 -0.0400 2.2219 8.3682 21 16 -1.6380 1.5196 8.8620 22 6 -2.0424 2.5043 10.3308 23 8 -2.5912 1.8059 7.8477 24 8 -1.4354 0.1715 9.2630 25 6 0.1262 1.9869 5.8826 26 6 0.5827 1.3413 4.7521 27 1 -0.3634 0.4169 0.9393 28 1 -0.3634 0.6051 -0.8307 29 1 -0.3634 -1.0219 -0.1086 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6657 1.1265 -3.4875 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7489 1.2491 36 1 0.9942 0.7581 2.3564 37 1 2.3408 -1.1463 6.2489 38 1 1.5083 0.0152 8.2507 39 1 0.6780 2.0965 9.1787 40 1 -0.1611 3.2832 8.1511 41 1 -2.1045 3.5574 10.0563 42 1 -3.0004 2.1774 10.7349 43 1 -1.2654 2.3702 11.0833 44 1 -0.4947 2.8656 5.7877 45 1 0.3193 1.7131 3.7730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436634822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:24 Heat of formation + Delta-G solvation = -110.399576 kcal Electronic energy + Delta-G solvation = -26781.242333 eV Core-core repulsion = 22890.005383 eV Total energy + Delta-G solvation = -3891.236951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34739 -39.72737 -38.11736 -37.95235 -36.96623 -35.17273 -34.16551 -32.76742 -31.95266 -30.43446 -28.98195 -27.59022 -27.43048 -26.60419 -23.89435 -23.57551 -21.47733 -20.66735 -19.79302 -19.19249 -17.87996 -17.58598 -17.39756 -17.22111 -16.78868 -16.63206 -16.34012 -16.07774 -15.83653 -15.68815 -14.82022 -14.71044 -14.66412 -14.44124 -14.02299 -13.95266 -13.85075 -13.72956 -13.53900 -13.25722 -13.10060 -13.04567 -12.97148 -12.93097 -12.70910 -12.61450 -12.26769 -12.15330 -12.11376 -12.08620 -11.65506 -11.50794 -11.34663 -11.00156 -10.72618 -10.40716 -10.11752 -10.06469 -9.73378 -8.03902 -6.18182 -1.06841 -0.17460 0.30621 1.42562 1.45074 1.52611 1.75799 1.92385 2.20342 2.47722 2.70948 2.83079 3.13918 3.20127 3.41744 3.69296 3.74940 3.92439 4.09012 4.16561 4.29092 4.33696 4.39424 4.47562 4.49639 4.54112 4.68028 4.81244 4.95375 4.96638 5.02274 5.04324 5.08345 5.16388 5.18787 5.29317 5.30393 5.32962 5.52670 5.64993 5.67205 5.78726 6.11191 6.18641 6.41191 6.56147 6.84860 7.17507 7.48861 8.95880 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.002143 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.253203 B =13060.215110 C =13585.412222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.544 3.456 15 O -0.587 6.587 16 C -0.142 4.142 17 C -0.076 4.076 18 C -0.115 4.115 19 C -0.075 4.075 20 C -0.558 4.558 21 S 2.402 3.598 22 C -0.633 4.633 23 O -0.984 6.984 24 O -0.985 6.985 25 C -0.114 4.114 26 C -0.090 4.090 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 11.342 28.793 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.333 3.667 15 O -0.469 6.469 16 C -0.146 4.146 17 C -0.095 4.095 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.685 4.685 21 S 2.591 3.409 22 C -0.786 4.786 23 O -0.981 6.981 24 O -0.982 6.982 25 C -0.132 4.132 26 C -0.109 4.109 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.149 0.851 38 H 0.180 0.820 39 H 0.200 0.800 40 H 0.201 0.799 41 H 0.177 0.823 42 H 0.152 0.848 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.084 10.076 28.287 30.455 hybrid contribution 0.593 -0.071 -1.193 1.334 sum -4.491 10.005 27.093 29.229 Atomic orbital electron populations 1.21673 0.97091 0.99309 0.99734 1.18373 0.93230 0.93175 0.90228 1.21693 0.98043 0.97686 1.00417 1.21226 1.29612 1.14450 0.91516 0.93708 1.25456 0.95181 0.95590 1.00918 1.69921 1.38092 1.21907 1.23712 0.85768 0.78494 0.78792 0.79705 1.20506 1.20778 1.20131 1.21351 0.97259 0.95223 0.83962 1.46079 1.52344 1.31815 1.05190 1.18822 0.79886 0.83775 0.84254 1.90708 1.40475 1.28239 1.87521 1.20055 1.02773 0.98547 0.93194 1.21378 0.97748 0.99318 0.91059 1.21433 0.97231 0.95030 0.99653 1.19523 0.98405 0.95660 0.94066 1.29394 1.21398 1.13160 1.04580 1.08126 0.77658 0.76807 0.78304 1.30083 1.13670 1.16437 1.18371 1.93563 1.59859 1.86260 1.58422 1.93556 1.86221 1.34708 1.83750 1.21479 0.99575 1.01214 0.90973 1.21572 0.95078 0.93451 1.00766 0.94520 0.91836 0.96305 0.96187 0.91657 0.94546 0.92981 0.93937 0.94115 0.75306 0.85052 0.82036 0.80033 0.79929 0.82295 0.84829 0.82298 0.81700 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.03 71.98 0.58 -4.88 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.40 8.11 71.98 0.58 -4.81 16 4 C -0.53 -28.37 8.01 25.60 0.20 -28.17 16 5 H 0.04 2.45 7.75 -2.91 -0.02 2.43 16 6 C 0.03 1.52 5.13 84.65 0.43 1.95 16 7 N -0.90 -48.13 9.45 21.45 0.20 -47.93 16 8 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.15 6.43 4.50 86.38 0.39 6.82 16 13 N -0.70 -25.97 4.86 -465.99 -2.26 -28.24 16 14 C 0.54 20.43 7.77 86.78 0.67 21.10 16 15 O -0.59 -26.35 16.35 -3.90 -0.06 -26.42 16 16 C -0.14 -4.20 5.87 -20.09 -0.12 -4.32 16 17 C -0.08 -2.00 9.60 22.53 0.22 -1.79 16 18 C -0.11 -2.20 9.68 22.23 0.22 -1.98 16 19 C -0.08 -1.18 5.15 -19.81 -0.10 -1.28 16 20 C -0.56 -2.53 5.92 71.23 0.42 -2.10 16 21 S 2.40 24.70 5.34 -56.49 -0.30 24.40 16 22 C -0.63 0.45 10.62 113.37 1.20 1.66 16 23 O -0.98 -19.67 18.10 -127.37 -2.31 -21.98 16 24 O -0.99 -19.70 18.10 -127.37 -2.30 -22.01 16 25 C -0.11 -2.05 9.68 22.23 0.22 -1.83 16 26 C -0.09 -2.12 9.54 22.53 0.21 -1.90 16 27 H 0.04 1.39 6.71 -2.39 -0.02 1.38 16 28 H 0.06 3.14 6.25 -2.38 -0.01 3.12 16 29 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 3.23 6.10 -2.39 -0.01 3.22 16 32 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 33 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 13.06 4.19 -92.71 -0.39 12.67 16 37 H 0.13 3.60 7.65 -2.91 -0.02 3.58 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.18 -0.51 8.08 -2.39 -0.02 -0.53 16 40 H 0.18 -0.53 8.08 -2.39 -0.02 -0.55 16 41 H 0.16 -0.94 8.14 -2.39 -0.02 -0.95 16 42 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.16 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.14 2.96 6.41 -2.91 -0.02 2.94 16 Total: -1.00 -82.64 380.68 0.71 -81.93 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.61 Total: 14.30 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.11 Total: -19.17 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.06 Total: -76.16 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: -4.67 Total: -70.40 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 24.70 SS G_CDS: -0.30 Total: 24.40 kcal Total: -82.64 0.71 -81.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436634822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.472 kcal (2) G-P(sol) polarization free energy of solvation -82.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds