Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 C 1.53007 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46860 * 54.99776 * 4 3 2 6 6 O 1.42898 * 109.46784 * 294.99746 * 4 3 2 7 7 C 1.53001 * 109.46945 * 174.99562 * 4 3 2 8 8 H 1.08997 * 109.47151 * 55.35185 * 7 4 3 9 9 C 1.53006 * 109.46430 * 175.34840 * 7 4 3 10 10 O 1.42898 * 109.47471 * 56.00315 * 9 7 4 11 11 N 1.46497 * 109.47478 * 295.34442 * 7 4 3 12 12 C 1.34777 * 119.99989 * 155.00067 * 11 7 4 13 13 O 1.21610 * 119.99731 * 0.02562 * 12 11 7 14 14 C 1.47428 * 119.99807 * 180.02562 * 12 11 7 15 15 C 1.39671 * 120.21911 * 0.02562 * 14 12 11 16 16 C 1.37804 * 119.94233 * 180.27795 * 15 14 12 17 17 C 1.38662 * 120.37877 * 359.46279 * 16 15 14 18 18 C 1.37918 * 120.43634 * 0.55628 * 17 16 15 19 19 C 1.39109 * 120.04895 * 359.70489 * 18 17 16 20 20 S 1.76200 * 120.18893 * 180.02562 * 19 18 17 21 21 C 1.76202 * 99.99852 * 351.22288 * 20 19 18 22 22 H 1.07999 * 120.00046 * 354.46286 * 21 20 19 23 23 C 1.38806 * 120.00048 * 174.47212 * 21 20 19 24 24 N 1.31551 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47421 * 89.99523 * 25 23 21 27 27 H 1.48494 * 109.47281 * 209.99761 * 25 23 21 28 28 H 1.48504 * 109.46838 * 329.99260 * 25 23 21 29 29 H 1.09000 * 109.46934 * 299.99847 * 1 2 3 30 30 H 1.08993 * 109.47090 * 60.00324 * 1 2 3 31 31 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47182 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.47042 * 119.99415 * 2 1 3 34 34 H 1.08999 * 109.47704 * 59.99741 * 3 2 1 35 35 H 1.09007 * 109.47206 * 299.99802 * 3 2 1 36 36 H 0.96696 * 114.00358 * 304.47299 * 6 4 3 37 37 H 1.09008 * 109.46665 * 175.99808 * 9 7 4 38 38 H 1.09001 * 109.47098 * 295.99605 * 9 7 4 39 39 H 0.96694 * 114.00189 * 180.02562 * 10 9 7 40 40 H 0.97000 * 119.99633 * 335.00966 * 11 7 4 41 41 H 1.08009 * 120.02716 * 359.97438 * 15 14 12 42 42 H 1.07994 * 119.81113 * 179.74616 * 16 15 14 43 43 H 1.07999 * 119.78340 * 180.30686 * 17 16 15 44 44 H 1.08002 * 119.97410 * 179.72367 * 18 17 16 45 45 H 0.97000 * 119.99987 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 8 4.0468 0.8731 1.2201 7 6 4.0798 2.8797 -0.1265 8 1 3.6503 3.4885 0.6691 9 6 5.6054 2.8914 -0.0107 10 8 6.1646 2.0197 -0.9952 11 7 3.6846 3.4260 -1.4271 12 6 3.5573 4.7580 -1.5879 13 8 3.7711 5.5065 -0.6535 14 6 3.1591 5.3078 -2.8966 15 6 2.9120 4.4523 -3.9727 16 6 2.5456 4.9726 -5.1950 17 6 2.4094 6.3424 -5.3616 18 6 2.6498 7.2015 -4.3098 19 6 3.0259 6.6961 -3.0696 20 16 3.3333 7.7902 -1.7231 21 6 3.2791 9.3362 -2.5667 22 1 3.1812 9.3615 -3.6420 23 6 3.3625 10.5216 -1.8494 24 7 3.4814 10.4908 -0.5396 25 14 3.3058 12.1606 -2.7437 26 1 1.8966 12.6160 -2.8538 27 1 4.0930 13.1658 -1.9855 28 1 3.8827 12.0029 -4.1030 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7068 1.3058 2.0152 37 1 5.9741 3.9046 -0.1711 38 1 5.8970 2.5517 0.9831 39 1 7.1305 1.9772 -0.9799 40 1 3.5144 2.8289 -2.1724 41 1 3.0128 3.3841 -3.8482 42 1 2.3591 4.3094 -6.0267 43 1 2.1169 6.7395 -6.3225 44 1 2.5458 8.2674 -4.4492 45 1 3.5393 11.3192 -0.0383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451151247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -123.244279 kcal Electronic energy + Delta-G solvation = -27338.248360 eV Core-core repulsion = 23446.454422 eV Total energy + Delta-G solvation = -3891.793939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95633 -38.52334 -37.31014 -36.40876 -34.40927 -34.06110 -32.76705 -31.15820 -30.28124 -29.36612 -28.04371 -25.83508 -24.24517 -23.28064 -21.99726 -21.37561 -21.02130 -20.10585 -18.32866 -17.47527 -17.27748 -16.44600 -16.28576 -15.82717 -15.61124 -15.17441 -14.86879 -14.63605 -14.30974 -14.04445 -13.91119 -13.70696 -13.59400 -13.51471 -13.06497 -12.96975 -12.64252 -12.13157 -12.06713 -11.94329 -11.71482 -11.59109 -11.34903 -11.23262 -11.20717 -10.94913 -10.86660 -10.82708 -10.35592 -10.12266 -9.98976 -9.80830 -9.64359 -9.49549 -8.78744 -8.73111 -8.34414 -8.08450 -6.54872 -6.47733 -4.17938 1.51879 2.01242 3.09906 3.11057 3.18312 3.34598 3.43297 3.48449 4.04953 4.19489 4.29915 4.48827 4.49615 4.74413 4.80984 4.93381 5.02943 5.11754 5.13174 5.22287 5.31578 5.35691 5.45736 5.49503 5.56852 5.59730 5.67603 5.69697 5.79296 5.85838 5.91928 5.98043 6.10283 6.14821 6.16628 6.37872 6.58576 6.72692 6.84801 7.02223 7.12451 7.43301 7.44376 7.57887 7.62112 7.88582 8.14741 8.75942 8.98706 10.55580 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003106 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.890359 B = 9012.234144 C = 9634.496742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.109 3.891 5 H 0.108 0.892 6 O -0.552 6.552 7 C 0.122 3.878 8 H 0.100 0.900 9 C 0.068 3.932 10 O -0.569 6.569 11 N -0.722 5.722 12 C 0.555 3.445 13 O -0.512 6.512 14 C -0.177 4.177 15 C -0.060 4.060 16 C -0.186 4.186 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.056 4.056 20 S 0.183 5.817 21 C -0.595 4.595 22 H 0.090 0.910 23 C 0.083 3.917 24 N -0.858 5.858 25 Si 0.919 3.081 26 H -0.273 1.273 27 H -0.279 1.279 28 H -0.268 1.268 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.373 0.627 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.376 0.624 40 H 0.397 0.603 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -18.420 -0.743 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.193 4.193 4 C 0.049 3.951 5 H 0.126 0.874 6 O -0.356 6.356 7 C 0.016 3.984 8 H 0.118 0.882 9 C -0.011 4.011 10 O -0.374 6.374 11 N -0.377 5.377 12 C 0.344 3.656 13 O -0.389 6.389 14 C -0.192 4.192 15 C -0.080 4.080 16 C -0.211 4.211 17 C -0.099 4.099 18 C -0.178 4.178 19 C -0.176 4.176 20 S 0.447 5.553 21 C -0.742 4.742 22 H 0.108 0.892 23 C -0.127 4.127 24 N -0.491 5.491 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.205 1.205 28 H -0.192 1.192 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.220 0.780 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.222 0.778 40 H 0.232 0.768 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.156 0.844 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.976 -18.137 1.054 18.194 hybrid contribution -0.097 1.534 -1.854 2.409 sum -1.072 -16.602 -0.800 16.656 Atomic orbital electron populations 1.21790 0.95973 1.01424 1.01930 1.21448 0.95547 0.96276 1.02382 1.22394 0.95657 0.97703 1.03587 1.22036 0.92322 0.92467 0.88284 0.87420 1.86618 1.73504 1.60215 1.15254 1.21629 0.93279 0.95358 0.88101 0.88227 1.22543 0.93856 0.93461 0.91233 1.86398 1.25155 1.67745 1.58067 1.45650 1.72401 1.07142 1.12536 1.18321 0.77287 0.81461 0.88508 1.90779 1.49699 1.57013 1.41425 1.19082 1.13746 0.92627 0.93729 1.20903 0.96815 0.97589 0.92682 1.20639 1.08190 0.95136 0.97105 1.21093 0.97348 0.93499 0.97937 1.21425 1.03158 1.00870 0.92346 1.23088 0.96833 0.96778 1.00920 1.84708 1.73301 0.93445 1.03861 1.24047 1.58638 0.94096 0.97372 0.89192 1.25092 0.93101 0.99698 0.94856 1.69971 1.44121 1.29146 1.05872 0.86153 0.78635 0.81080 0.79740 1.19862 1.20474 1.19210 0.92815 0.92688 0.92901 0.92103 0.91538 0.91427 0.90483 0.78046 0.92802 0.92721 0.77762 0.76782 0.87160 0.87061 0.87017 0.84437 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -0.99 5.83 -26.73 -0.16 -1.15 16 3 C -0.16 -1.43 4.80 -26.73 -0.13 -1.56 16 4 C 0.11 1.08 2.36 -26.73 -0.06 1.02 16 5 H 0.11 1.17 7.74 -51.93 -0.40 0.76 16 6 O -0.55 -5.32 12.10 -35.23 -0.43 -5.74 16 7 C 0.12 1.51 2.14 -67.93 -0.15 1.36 16 8 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 9 C 0.07 0.84 6.58 37.16 0.24 1.09 16 10 O -0.57 -6.60 12.84 -35.23 -0.45 -7.05 16 11 N -0.72 -10.08 4.31 -54.88 -0.24 -10.32 16 12 C 0.55 10.43 7.71 -12.52 -0.10 10.34 16 13 O -0.51 -11.50 13.43 5.27 0.07 -11.43 16 14 C -0.18 -3.45 5.89 -104.75 -0.62 -4.06 16 15 C -0.06 -0.94 9.53 -39.21 -0.37 -1.32 16 16 C -0.19 -2.86 10.02 -39.58 -0.40 -3.25 16 17 C -0.08 -1.30 10.03 -39.54 -0.40 -1.70 16 18 C -0.15 -3.18 9.20 -39.38 -0.36 -3.54 16 19 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 20 S 0.18 4.84 18.56 -107.50 -2.00 2.84 16 21 C -0.59 -16.31 8.97 30.94 0.28 -16.03 16 22 H 0.09 2.35 5.04 -52.49 -0.26 2.08 16 23 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 24 N -0.86 -24.56 13.22 55.49 0.73 -23.83 16 25 Si 0.92 20.58 29.55 -169.99 -5.02 15.55 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 36 H 0.37 2.43 9.03 45.56 0.41 2.85 16 37 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 38 H 0.05 0.60 7.70 -51.93 -0.40 0.20 16 39 H 0.38 2.95 9.12 45.56 0.42 3.37 16 40 H 0.40 4.74 6.63 -40.82 -0.27 4.47 16 41 H 0.11 1.35 6.40 -52.48 -0.34 1.01 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.14 2.98 5.10 -52.49 -0.27 2.71 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -32.87 383.00 -8.56 -41.43 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.83 Total: 11.76 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.18 Total: -18.99 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.50 Total: -34.15 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.81 Total: -24.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.00 Total: 2.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.87 -8.56 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451151247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.814 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds