Wall clock time and date at job start Sat Apr 11 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 C 1.53007 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46860 * 54.99776 * 4 3 2 6 6 O 1.42898 * 109.46784 * 294.99746 * 4 3 2 7 7 C 1.53001 * 109.46945 * 174.99562 * 4 3 2 8 8 H 1.08997 * 109.47151 * 55.35185 * 7 4 3 9 9 C 1.53006 * 109.46430 * 175.34840 * 7 4 3 10 10 O 1.42898 * 109.47471 * 56.00315 * 9 7 4 11 11 N 1.46497 * 109.47478 * 295.34442 * 7 4 3 12 12 C 1.34777 * 119.99989 * 155.00067 * 11 7 4 13 13 O 1.21610 * 119.99731 * 0.02562 * 12 11 7 14 14 C 1.47428 * 119.99807 * 180.02562 * 12 11 7 15 15 C 1.39671 * 120.21911 * 0.02562 * 14 12 11 16 16 C 1.37804 * 119.94233 * 180.27795 * 15 14 12 17 17 C 1.38662 * 120.37877 * 359.46279 * 16 15 14 18 18 C 1.37918 * 120.43634 * 0.55628 * 17 16 15 19 19 C 1.39109 * 120.04895 * 359.70489 * 18 17 16 20 20 S 1.76200 * 120.18893 * 180.02562 * 19 18 17 21 21 C 1.76202 * 99.99852 * 351.22288 * 20 19 18 22 22 H 1.07999 * 120.00046 * 354.46286 * 21 20 19 23 23 C 1.38806 * 120.00048 * 174.47212 * 21 20 19 24 24 N 1.31551 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47421 * 89.99523 * 25 23 21 27 27 H 1.48494 * 109.47281 * 209.99761 * 25 23 21 28 28 H 1.48504 * 109.46838 * 329.99260 * 25 23 21 29 29 H 1.09000 * 109.46934 * 299.99847 * 1 2 3 30 30 H 1.08993 * 109.47090 * 60.00324 * 1 2 3 31 31 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47182 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.47042 * 119.99415 * 2 1 3 34 34 H 1.08999 * 109.47704 * 59.99741 * 3 2 1 35 35 H 1.09007 * 109.47206 * 299.99802 * 3 2 1 36 36 H 0.96696 * 114.00358 * 304.47299 * 6 4 3 37 37 H 1.09008 * 109.46665 * 175.99808 * 9 7 4 38 38 H 1.09001 * 109.47098 * 295.99605 * 9 7 4 39 39 H 0.96694 * 114.00189 * 180.02562 * 10 9 7 40 40 H 0.97000 * 119.99633 * 335.00966 * 11 7 4 41 41 H 1.08009 * 120.02716 * 359.97438 * 15 14 12 42 42 H 1.07994 * 119.81113 * 179.74616 * 16 15 14 43 43 H 1.07999 * 119.78340 * 180.30686 * 17 16 15 44 44 H 1.08002 * 119.97410 * 179.72367 * 18 17 16 45 45 H 0.97000 * 119.99987 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 8 4.0468 0.8731 1.2201 7 6 4.0798 2.8797 -0.1265 8 1 3.6503 3.4885 0.6691 9 6 5.6054 2.8914 -0.0107 10 8 6.1646 2.0197 -0.9952 11 7 3.6846 3.4260 -1.4271 12 6 3.5573 4.7580 -1.5879 13 8 3.7711 5.5065 -0.6535 14 6 3.1591 5.3078 -2.8966 15 6 2.9120 4.4523 -3.9727 16 6 2.5456 4.9726 -5.1950 17 6 2.4094 6.3424 -5.3616 18 6 2.6498 7.2015 -4.3098 19 6 3.0259 6.6961 -3.0696 20 16 3.3333 7.7902 -1.7231 21 6 3.2791 9.3362 -2.5667 22 1 3.1812 9.3615 -3.6420 23 6 3.3625 10.5216 -1.8494 24 7 3.4814 10.4908 -0.5396 25 14 3.3058 12.1606 -2.7437 26 1 1.8966 12.6160 -2.8538 27 1 4.0930 13.1658 -1.9855 28 1 3.8827 12.0029 -4.1030 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7068 1.3058 2.0152 37 1 5.9741 3.9046 -0.1711 38 1 5.8970 2.5517 0.9831 39 1 7.1305 1.9772 -0.9799 40 1 3.5144 2.8289 -2.1724 41 1 3.0128 3.3841 -3.8482 42 1 2.3591 4.3094 -6.0267 43 1 2.1169 6.7395 -6.3225 44 1 2.5458 8.2674 -4.4492 45 1 3.5393 11.3192 -0.0383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451151247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:29 Heat of formation + Delta-G solvation = -149.181861 kcal Electronic energy + Delta-G solvation = -27339.373098 eV Core-core repulsion = 23446.454422 eV Total energy + Delta-G solvation = -3892.918677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26699 -39.67738 -38.68489 -37.34240 -35.48439 -34.93197 -34.76429 -32.52258 -31.78082 -30.47499 -28.92927 -27.83667 -25.30290 -24.49685 -23.44361 -22.18257 -22.07419 -21.47425 -19.98872 -18.89736 -18.41861 -17.51879 -17.42515 -17.13939 -16.95741 -16.49845 -16.20622 -16.00085 -15.54464 -15.33270 -15.17298 -15.00595 -14.70187 -14.53119 -14.45849 -14.22267 -13.81552 -13.43259 -13.30794 -13.00408 -12.93865 -12.86903 -12.78397 -12.57554 -12.54724 -12.09886 -12.04416 -11.68028 -11.51428 -11.50646 -11.41751 -11.30468 -11.02455 -10.83570 -10.41297 -10.06696 -9.91587 -9.74474 -8.46265 -8.45231 -6.23722 0.03895 0.53994 1.26557 1.35774 1.44270 1.65000 2.01996 2.10711 2.24374 2.87440 3.03970 3.24963 3.35689 3.39560 3.68721 3.87910 3.94563 4.01827 4.07986 4.26341 4.27170 4.33655 4.39625 4.52279 4.62074 4.62610 4.64815 4.72979 4.80099 4.86354 4.96530 5.02339 5.09347 5.12282 5.26828 5.36465 5.37625 5.45530 5.49939 5.53762 5.58685 5.67579 6.09905 6.16072 6.61502 6.79510 6.84768 6.95905 7.35703 8.59965 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003106 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.890359 B = 9012.234144 C = 9634.496742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.152 4.152 4 C 0.127 3.873 5 H 0.109 0.891 6 O -0.558 6.558 7 C 0.118 3.882 8 H 0.084 0.916 9 C 0.075 3.925 10 O -0.574 6.574 11 N -0.698 5.698 12 C 0.550 3.450 13 O -0.554 6.554 14 C -0.181 4.181 15 C -0.054 4.054 16 C -0.157 4.157 17 C -0.070 4.070 18 C -0.175 4.175 19 C -0.072 4.072 20 S 0.067 5.933 21 C -0.602 4.602 22 H 0.093 0.907 23 C 0.025 3.975 24 N -0.904 5.904 25 Si 0.992 3.008 26 H -0.264 1.264 27 H -0.274 1.274 28 H -0.260 1.260 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.387 0.613 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.393 0.607 40 H 0.411 0.589 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -21.699 -3.832 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.190 4.190 4 C 0.067 3.933 5 H 0.127 0.873 6 O -0.363 6.363 7 C 0.013 3.987 8 H 0.102 0.898 9 C -0.004 4.004 10 O -0.381 6.381 11 N -0.353 5.353 12 C 0.339 3.661 13 O -0.434 6.434 14 C -0.194 4.194 15 C -0.074 4.074 16 C -0.180 4.180 17 C -0.091 4.091 18 C -0.200 4.200 19 C -0.191 4.191 20 S 0.326 5.674 21 C -0.749 4.749 22 H 0.110 0.890 23 C -0.181 4.181 24 N -0.539 5.539 25 Si 0.813 3.187 26 H -0.189 1.189 27 H -0.198 1.198 28 H -0.184 1.184 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.249 0.751 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.167 0.833 44 H 0.136 0.864 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.609 -21.537 -2.104 21.699 hybrid contribution 0.087 2.134 -1.075 2.391 sum -1.522 -19.403 -3.178 19.721 Atomic orbital electron populations 1.21791 0.95692 1.01968 1.01691 1.21405 0.95737 0.95366 1.02643 1.22359 0.94961 0.98441 1.03224 1.21821 0.92604 0.90223 0.88676 0.87345 1.86590 1.73777 1.60248 1.15727 1.21797 0.93520 0.96734 0.86660 0.89792 1.22368 0.93676 0.92033 0.92355 1.86341 1.26914 1.67090 1.57763 1.45423 1.70566 1.05548 1.13738 1.18444 0.76986 0.82699 0.87955 1.90782 1.51496 1.58453 1.42706 1.19478 1.12618 0.91973 0.95350 1.21424 0.95018 0.99418 0.91522 1.21315 1.03705 0.94932 0.98069 1.21538 0.95432 0.94044 0.98056 1.21442 1.04656 1.00850 0.93052 1.22997 0.98892 0.97252 0.99912 1.84851 1.78898 0.95688 1.07959 1.24239 1.58684 0.94522 0.97445 0.88952 1.26121 0.92773 1.03547 0.95624 1.70121 1.46309 1.29937 1.07572 0.85054 0.78987 0.76114 0.78540 1.18924 1.19850 1.18351 0.93115 0.92904 0.91991 0.91579 0.91506 0.91694 0.91046 0.76429 0.96059 0.91062 0.75778 0.75149 0.82520 0.81763 0.83325 0.86418 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.11 -1.62 5.83 30.59 0.18 -1.44 16 3 C -0.15 -2.51 4.80 30.60 0.15 -2.36 16 4 C 0.13 2.27 2.36 30.60 0.07 2.34 16 5 H 0.11 2.00 7.74 -2.39 -0.02 1.98 16 6 O -0.56 -9.56 12.10 -148.98 -1.80 -11.36 16 7 C 0.12 2.85 2.14 44.99 0.10 2.94 16 8 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 9 C 0.07 1.82 6.58 71.98 0.47 2.29 16 10 O -0.57 -12.18 12.84 -148.98 -1.91 -14.09 16 11 N -0.70 -18.63 4.31 -445.79 -1.92 -20.56 16 12 C 0.55 21.00 7.71 86.66 0.67 21.67 16 13 O -0.55 -26.60 13.43 -4.06 -0.05 -26.65 16 14 C -0.18 -6.93 5.89 -19.95 -0.12 -7.05 16 15 C -0.05 -1.47 9.53 22.51 0.21 -1.25 16 16 C -0.16 -3.88 10.02 22.27 0.22 -3.66 16 17 C -0.07 -2.10 10.03 22.30 0.22 -1.88 16 18 C -0.17 -7.27 9.20 22.40 0.21 -7.06 16 19 C -0.07 -3.39 6.14 23.04 0.14 -3.24 16 20 S 0.07 3.87 18.56 -56.49 -1.05 2.82 16 21 C -0.60 -35.21 8.97 67.96 0.61 -34.60 16 22 H 0.09 5.11 5.04 -2.91 -0.01 5.09 16 23 C 0.03 1.44 5.49 84.87 0.47 1.90 16 24 N -0.90 -55.25 13.22 21.65 0.29 -54.97 16 25 Si 0.99 43.95 29.55 68.60 2.03 45.97 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.97 7.82 -2.39 -0.02 0.95 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.26 7.61 -2.38 -0.02 1.25 16 36 H 0.39 4.39 9.03 -74.06 -0.67 3.72 16 37 H 0.02 0.65 8.14 -2.38 -0.02 0.64 16 38 H 0.07 1.49 7.70 -2.39 -0.02 1.48 16 39 H 0.39 5.41 9.12 -74.06 -0.68 4.73 16 40 H 0.41 8.47 6.63 -92.71 -0.61 7.86 16 41 H 0.16 2.82 6.40 -2.91 -0.02 2.80 16 42 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 44 H 0.12 5.30 5.10 -2.91 -0.01 5.29 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.46 383.00 -1.02 -80.48 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.91 Total: 31.16 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 4.32 Total: -32.80 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.64 Total: -75.52 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -3.77 Total: -52.11 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.05 Total: 2.82 kcal Total: -79.46 -1.02 -80.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451151247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.700 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds