Wall clock time and date at job start Sat Apr 11 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 C 1.52996 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47340 * 304.99994 * 4 3 2 6 6 O 1.42896 * 109.47509 * 65.00301 * 4 3 2 7 7 C 1.53002 * 109.47351 * 185.00471 * 4 3 2 8 8 H 1.09002 * 109.47157 * 295.18909 * 7 4 3 9 9 C 1.53000 * 109.47552 * 175.19118 * 7 4 3 10 10 O 1.42903 * 109.46971 * 304.04041 * 9 7 4 11 11 N 1.46501 * 109.47315 * 55.18801 * 7 4 3 12 12 C 1.34775 * 119.99836 * 205.00259 * 11 7 4 13 13 O 1.21607 * 120.00368 * 0.02562 * 12 11 7 14 14 C 1.47436 * 119.99417 * 180.02562 * 12 11 7 15 15 C 1.39672 * 120.21531 * 0.02562 * 14 12 11 16 16 C 1.37810 * 119.93799 * 179.97438 * 15 14 12 17 17 C 1.38661 * 120.37863 * 0.02568 * 16 15 14 18 18 C 1.37907 * 120.44208 * 359.97285 * 17 16 15 19 19 C 1.39120 * 120.04583 * 359.72389 * 18 17 16 20 20 S 1.76202 * 120.18827 * 180.27474 * 19 18 17 21 21 C 1.76206 * 100.00058 * 351.53650 * 20 19 18 22 22 H 1.07999 * 119.99570 * 354.44832 * 21 20 19 23 23 C 1.38802 * 119.99844 * 174.44371 * 21 20 19 24 24 N 1.31558 * 120.00234 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99784 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46867 * 90.00235 * 25 23 21 27 27 H 1.48506 * 109.46909 * 209.99874 * 25 23 21 28 28 H 1.48496 * 109.47289 * 330.00160 * 25 23 21 29 29 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46764 * 299.99500 * 1 2 3 31 31 H 1.08998 * 109.47357 * 59.99936 * 1 2 3 32 32 H 1.08999 * 109.47291 * 120.00849 * 2 1 3 33 33 H 1.09004 * 109.46873 * 240.00462 * 2 1 3 34 34 H 1.08999 * 109.47794 * 300.00540 * 3 2 1 35 35 H 1.09004 * 109.46933 * 60.00499 * 3 2 1 36 36 H 0.96698 * 114.00308 * 55.42665 * 6 4 3 37 37 H 1.09005 * 109.47204 * 64.03231 * 9 7 4 38 38 H 1.09001 * 109.47273 * 184.03401 * 9 7 4 39 39 H 0.96694 * 113.99940 * 180.02562 * 10 9 7 40 40 H 0.96998 * 119.99687 * 25.00548 * 11 7 4 41 41 H 1.07996 * 120.03450 * 0.02835 * 15 14 12 42 42 H 1.07996 * 119.81068 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.77964 * 179.97438 * 17 16 15 44 44 H 1.07998 * 119.98168 * 180.02562 * 18 17 16 45 45 H 0.96998 * 120.00048 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8734 -1.2219 7 6 4.0800 2.8795 0.1252 8 1 3.7884 3.4472 -0.7584 9 6 5.6053 2.8707 0.2452 10 8 5.9915 2.0490 1.3486 11 7 3.4999 3.5009 1.3183 12 6 3.3733 4.8410 1.3862 13 8 3.7401 5.5343 0.4569 14 6 2.7900 5.4663 2.5872 15 6 2.3677 4.6743 3.6574 16 6 1.8238 5.2649 4.7774 17 6 1.6919 6.6433 4.8494 18 6 2.1037 7.4403 3.8019 19 6 2.6611 6.8635 2.6652 20 16 3.1951 7.8787 1.3276 21 6 2.5629 9.4367 1.8546 22 1 1.9462 9.4979 2.7391 23 6 2.8574 10.5852 1.1329 24 7 3.6091 10.5106 0.0558 25 14 2.1877 12.2370 1.6919 26 1 3.1539 12.8733 2.6229 27 1 1.9866 13.1148 0.5111 28 1 0.8904 12.0359 2.3860 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.7040 1.3054 -2.0167 37 1 6.0397 2.4741 -0.6726 38 1 5.9629 3.8876 0.4066 39 1 6.9474 1.9973 1.4849 40 1 3.2070 2.9479 2.0594 41 1 2.4681 3.6002 3.6075 42 1 1.4983 4.6506 5.6039 43 1 1.2639 7.0959 5.7316 44 1 1.9979 8.5131 3.8660 45 1 3.8147 11.3131 -0.4487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451151250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:32 Heat of formation + Delta-G solvation = -122.674534 kcal Electronic energy + Delta-G solvation = -27376.653218 eV Core-core repulsion = 23484.883985 eV Total energy + Delta-G solvation = -3891.769233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97453 -38.51519 -37.30757 -36.44972 -34.43249 -34.04003 -32.76733 -31.16127 -30.28330 -29.34792 -28.07191 -25.83711 -24.22250 -23.29755 -22.00176 -21.34210 -21.04384 -20.12449 -18.34093 -17.51336 -17.26847 -16.42893 -16.23845 -15.85485 -15.62897 -15.17365 -14.89735 -14.64113 -14.32558 -14.04935 -13.92667 -13.70825 -13.58863 -13.52172 -13.07066 -12.94945 -12.62852 -12.14174 -12.04449 -11.93635 -11.72803 -11.59598 -11.36451 -11.23085 -11.20957 -10.95265 -10.86901 -10.82600 -10.35344 -10.15821 -9.98092 -9.81004 -9.63411 -9.50555 -8.78527 -8.73576 -8.34357 -8.09024 -6.54890 -6.47830 -4.18097 1.51687 2.00952 3.09778 3.11022 3.18251 3.34130 3.42956 3.48268 4.04853 4.21420 4.27679 4.47461 4.48717 4.75275 4.81926 4.93293 5.03177 5.11583 5.11908 5.23634 5.31483 5.35363 5.44692 5.48603 5.57171 5.59419 5.68324 5.70147 5.78490 5.86383 5.92721 5.98107 6.10394 6.15458 6.17811 6.37629 6.58330 6.71802 6.84469 7.01929 7.12239 7.43169 7.44202 7.57705 7.59603 7.88158 8.14625 8.75666 8.98598 10.55485 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003148 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.184674 B = 8893.445031 C = 9512.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.155 4.155 4 C 0.106 3.894 5 H 0.111 0.889 6 O -0.554 6.554 7 C 0.123 3.877 8 H 0.100 0.900 9 C 0.067 3.933 10 O -0.570 6.570 11 N -0.722 5.722 12 C 0.555 3.445 13 O -0.512 6.512 14 C -0.177 4.177 15 C -0.060 4.060 16 C -0.186 4.186 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.056 4.056 20 S 0.183 5.817 21 C -0.595 4.595 22 H 0.090 0.910 23 C 0.083 3.917 24 N -0.858 5.858 25 Si 0.919 3.081 26 H -0.273 1.273 27 H -0.279 1.279 28 H -0.268 1.268 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.374 0.626 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.397 0.603 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -18.319 2.106 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.193 4.193 4 C 0.046 3.954 5 H 0.129 0.871 6 O -0.358 6.358 7 C 0.017 3.983 8 H 0.118 0.882 9 C -0.012 4.012 10 O -0.375 6.375 11 N -0.378 5.378 12 C 0.344 3.656 13 O -0.389 6.389 14 C -0.192 4.192 15 C -0.080 4.080 16 C -0.211 4.211 17 C -0.099 4.099 18 C -0.178 4.178 19 C -0.176 4.176 20 S 0.447 5.553 21 C -0.742 4.742 22 H 0.108 0.892 23 C -0.128 4.128 24 N -0.491 5.491 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.205 1.205 28 H -0.192 1.192 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.223 0.777 40 H 0.232 0.768 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.156 0.844 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.507 -18.138 0.395 18.149 hybrid contribution -0.933 1.620 1.565 2.438 sum -1.439 -16.518 1.961 16.696 Atomic orbital electron populations 1.21790 0.95962 1.01418 1.01947 1.21453 0.95555 0.96285 1.02378 1.22377 0.95650 0.97654 1.03605 1.22078 0.92483 0.92536 0.88258 0.87140 1.86606 1.73498 1.60376 1.15309 1.21626 0.91683 0.94448 0.90535 0.88202 1.22558 0.95320 0.94326 0.88994 1.86388 1.28113 1.71282 1.51736 1.45677 1.65594 1.06902 1.19597 1.18327 0.78625 0.81373 0.87261 1.90779 1.48710 1.61047 1.38372 1.19083 1.11694 0.92443 0.95972 1.20900 0.96355 0.97768 0.92976 1.20640 1.06879 0.94805 0.98750 1.21090 0.97408 0.93759 0.97614 1.21426 1.02202 1.00970 0.93208 1.23091 0.97710 0.96292 1.00519 1.84712 1.58184 0.96687 1.15733 1.24048 1.37534 0.95605 1.16969 0.89182 1.25094 0.93891 0.99646 0.94120 1.69973 1.33558 1.30454 1.15124 0.86153 0.79584 0.81261 0.78605 1.19872 1.20468 1.19203 0.92906 0.92684 0.92804 0.92099 0.91547 0.91411 0.90509 0.77933 0.92672 0.92724 0.77681 0.76752 0.87182 0.87062 0.87017 0.84430 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.00 5.83 -26.73 -0.16 -1.16 16 3 C -0.16 -1.44 4.73 -26.74 -0.13 -1.57 16 4 C 0.11 1.07 2.48 -26.73 -0.07 1.00 16 5 H 0.11 1.20 7.43 -51.93 -0.39 0.82 16 6 O -0.55 -5.40 12.48 -35.23 -0.44 -5.84 16 7 C 0.12 1.52 2.18 -67.93 -0.15 1.37 16 8 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 9 C 0.07 0.83 6.69 37.16 0.25 1.07 16 10 O -0.57 -6.48 12.66 -35.23 -0.45 -6.93 16 11 N -0.72 -10.06 4.14 -54.88 -0.23 -10.29 16 12 C 0.55 10.42 7.71 -12.52 -0.10 10.32 16 13 O -0.51 -11.49 13.43 5.27 0.07 -11.42 16 14 C -0.18 -3.44 5.89 -104.75 -0.62 -4.06 16 15 C -0.06 -0.94 9.53 -39.20 -0.37 -1.32 16 16 C -0.19 -2.85 10.02 -39.58 -0.40 -3.25 16 17 C -0.08 -1.30 10.02 -39.55 -0.40 -1.70 16 18 C -0.15 -3.17 9.20 -39.38 -0.36 -3.54 16 19 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 20 S 0.18 4.84 18.56 -107.50 -2.00 2.84 16 21 C -0.59 -16.30 8.98 30.94 0.28 -16.02 16 22 H 0.09 2.34 5.03 -52.49 -0.26 2.08 16 23 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 24 N -0.86 -24.56 13.22 55.49 0.73 -23.82 16 25 Si 0.92 20.56 29.55 -169.99 -5.02 15.53 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.76 6.99 -51.93 -0.36 0.39 16 36 H 0.37 2.51 9.03 45.56 0.41 2.93 16 37 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.38 2.85 9.12 45.56 0.42 3.27 16 40 H 0.40 4.73 6.13 -40.82 -0.25 4.48 16 41 H 0.11 1.34 6.40 -52.49 -0.34 1.00 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.14 2.98 5.09 -52.49 -0.27 2.71 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -32.79 382.01 -8.51 -41.31 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.77 Total: 11.89 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.18 Total: -19.03 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.51 Total: -34.11 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.82 Total: -24.19 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.00 Total: 2.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.79 -8.51 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451151250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.366 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds