Wall clock time and date at job start Sat Apr 11 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47057 * 2 1 4 4 C 1.53001 * 109.46931 * 120.00211 * 2 1 3 5 5 N 1.46501 * 109.46943 * 180.02562 * 4 2 1 6 6 C 1.34779 * 119.99776 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00051 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.46859 * 59.99480 * 8 6 5 10 10 C 1.50701 * 109.46824 * 299.99865 * 8 6 5 11 11 H 1.08000 * 120.00335 * 325.09587 * 10 8 6 12 12 C 1.37881 * 119.99960 * 144.81992 * 10 8 6 13 13 N 1.31514 * 120.00014 * 184.97850 * 12 10 8 14 14 Si 1.86795 * 119.99833 * 4.98305 * 12 10 8 15 15 H 1.48504 * 109.47254 * 84.66745 * 14 12 10 16 16 H 1.48505 * 109.47074 * 204.66713 * 14 12 10 17 17 H 1.48496 * 109.47592 * 324.66399 * 14 12 10 18 18 C 1.50699 * 109.47408 * 179.97438 * 8 6 5 19 19 C 1.38236 * 119.99776 * 65.01117 * 18 8 6 20 20 C 1.38237 * 119.99232 * 179.81058 * 19 18 8 21 21 C 1.38235 * 120.00523 * 0.40278 * 20 19 18 22 22 C 1.38231 * 119.99761 * 359.85066 * 21 20 19 23 23 C 1.38234 * 119.99820 * 245.28865 * 18 8 6 24 24 S 1.81401 * 109.47266 * 239.99918 * 2 1 3 25 25 C 1.81401 * 101.92134 * 60.00209 * 24 2 1 26 26 O 1.42093 * 108.57787 * 174.48578 * 24 2 1 27 27 O 1.42100 * 108.57831 * 305.51489 * 24 2 1 28 28 H 1.08997 * 109.46773 * 300.00197 * 1 2 3 29 29 H 1.09002 * 109.46489 * 60.00059 * 1 2 3 30 30 H 1.08993 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47711 * 299.99817 * 3 2 1 33 33 H 1.09007 * 109.47549 * 60.00215 * 3 2 1 34 34 H 1.09004 * 109.47216 * 59.99856 * 4 2 1 35 35 H 1.09007 * 109.46618 * 299.99751 * 4 2 1 36 36 H 0.97000 * 119.99997 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99883 * 180.02562 * 13 12 10 38 38 H 1.07994 * 120.00341 * 0.02562 * 19 18 8 39 39 H 1.07999 * 119.99605 * 180.23421 * 20 19 18 40 40 H 1.07995 * 119.99991 * 179.83537 * 21 20 19 41 41 H 1.08004 * 120.00182 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00178 * 359.97438 * 23 18 8 43 43 H 1.08999 * 109.47510 * 59.99466 * 25 24 2 44 44 H 1.08999 * 109.47178 * 180.02562 * 25 24 2 45 45 H 1.09007 * 109.46878 * 300.00113 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5051 -0.7208 1.2495 6 6 4.1789 -1.3039 2.2607 7 8 3.5725 -1.8286 3.1705 8 6 5.6859 -1.3029 2.2614 9 1 6.0485 -0.2749 2.2614 10 6 6.1892 -2.0130 1.0312 11 1 5.6468 -2.8593 0.6362 12 6 7.3391 -1.5788 0.4065 13 7 7.7251 -2.1350 -0.7211 14 14 8.3489 -0.2007 1.1617 15 1 9.2748 -0.7644 2.1768 16 1 9.1333 0.4780 0.0989 17 1 7.4415 0.7800 1.8099 18 6 6.1882 -2.0123 3.4924 19 6 5.9427 -3.3623 3.6607 20 6 6.4069 -4.0138 4.7881 21 6 7.1094 -3.3137 5.7510 22 6 7.3504 -1.9627 5.5851 23 6 6.8896 -1.3119 4.4559 24 16 2.1348 -0.8551 -1.4811 25 6 1.4231 0.1515 -2.8118 26 8 3.5497 -0.7330 -1.5284 27 8 1.5480 -2.1485 -1.5284 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 1.2492 35 1 1.6767 -0.2074 2.1392 36 1 3.9901 -0.3008 0.5220 37 1 8.5343 -1.8298 -1.1603 38 1 5.3912 -3.9086 2.9099 39 1 6.2183 -5.0692 4.9178 40 1 7.4697 -3.8222 6.6330 41 1 7.8989 -1.4156 6.3377 42 1 7.0779 -0.2564 4.3263 43 1 1.7895 1.1747 -2.7291 44 1 1.7154 -0.2627 -3.7768 45 1 0.3362 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457022752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:37 Heat of formation + Delta-G solvation = -80.183769 kcal Electronic energy + Delta-G solvation = -28691.433677 eV Core-core repulsion = 24801.506983 eV Total energy + Delta-G solvation = -3889.926695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.44218 -38.12977 -36.92241 -36.72619 -35.86223 -33.55554 -32.91985 -31.39421 -30.07102 -29.67008 -27.94878 -27.71870 -25.89467 -23.37344 -21.86359 -21.74592 -20.94901 -19.33432 -18.41189 -17.06258 -16.97882 -16.58742 -16.05413 -15.91075 -15.71158 -15.29574 -14.57416 -14.50407 -14.30906 -14.06605 -13.66845 -13.58381 -13.27823 -13.12784 -13.10977 -12.85409 -12.63843 -12.57144 -12.46410 -12.26530 -11.96936 -11.88747 -11.86009 -11.78468 -11.55694 -11.41710 -11.06580 -10.92289 -10.90823 -10.40272 -10.15035 -10.13899 -9.83291 -9.42840 -8.93713 -8.59248 -8.50950 -8.07621 -7.74901 -6.14528 -4.17810 -0.03465 2.21268 2.27665 2.69263 3.22050 3.30510 3.34348 3.55145 3.66306 3.70692 4.01547 4.27005 4.33361 4.36553 4.63870 4.69244 4.71963 4.89317 5.14379 5.14994 5.25380 5.35282 5.41255 5.50524 5.60043 5.64648 5.66199 5.73801 5.76199 5.79690 5.89230 6.02348 6.16277 6.35508 6.39114 6.53400 6.80510 6.91552 7.03067 7.22644 7.31645 7.38890 7.67013 7.86359 8.22256 8.36912 8.85936 9.10548 9.42394 10.96946 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.004437 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.779161 B = 6309.633885 C = 7299.216347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.556 4.556 3 C -0.141 4.141 4 C 0.142 3.858 5 N -0.742 5.742 6 C 0.539 3.461 7 O -0.560 6.560 8 C 0.019 3.981 9 H 0.074 0.926 10 C -0.508 4.508 11 H 0.083 0.917 12 C 0.088 3.912 13 N -0.877 5.877 14 Si 0.864 3.136 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.263 1.263 18 C -0.026 4.026 19 C -0.073 4.073 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.137 4.137 24 S 2.415 3.585 25 C -0.665 4.665 26 O -0.899 6.899 27 O -0.931 6.931 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.416 0.584 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 8.917 -0.263 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.646 4.646 3 C -0.199 4.199 4 C 0.017 3.983 5 N -0.401 5.401 6 C 0.329 3.671 7 O -0.438 6.438 8 C -0.003 4.003 9 H 0.092 0.908 10 C -0.545 4.545 11 H 0.102 0.898 12 C -0.117 4.117 13 N -0.512 5.512 14 Si 0.691 3.309 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.028 4.028 19 C -0.091 4.091 20 C -0.147 4.147 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.156 4.156 24 S 2.594 3.406 25 C -0.814 4.814 26 O -0.895 6.895 27 O -0.928 6.928 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.349 7.795 0.133 14.604 hybrid contribution 0.369 1.617 -0.089 1.661 sum -11.980 9.412 0.044 15.235 Atomic orbital electron populations 1.21726 0.88997 1.04362 1.04312 1.30064 1.06818 1.09263 1.18414 1.21821 1.02951 0.90869 1.04217 1.20972 0.82546 1.00244 0.94578 1.46319 1.05004 1.60979 1.27765 1.21196 0.91107 0.75229 0.79606 1.90590 1.71122 1.45464 1.36638 1.18586 0.88492 0.98788 0.94414 0.90846 1.20488 1.10537 1.16880 1.06614 0.89849 1.24941 0.96723 0.96024 0.93996 1.69869 1.23741 1.41850 1.15752 0.87064 0.81227 0.83076 0.79522 1.19288 1.21137 1.18814 1.20097 0.94854 0.94390 0.93409 1.20865 0.97644 0.94282 0.96302 1.21029 0.99494 0.99153 0.95021 1.20848 1.01557 0.94574 0.99249 1.20869 1.01234 0.94863 0.97729 1.20961 1.00917 0.99138 0.94537 1.08560 0.76797 0.77034 0.78223 1.30421 1.13797 1.16950 1.20188 1.93705 1.24943 1.86251 1.84629 1.93583 1.79684 1.34045 1.85504 0.89975 0.91103 0.90189 0.90066 0.91194 0.89961 0.90310 0.89788 0.74408 0.92284 0.86443 0.87139 0.87380 0.87329 0.87451 0.85195 0.85217 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.22 37.16 0.31 -0.70 16 2 C -0.56 -5.99 0.62 -90.62 -0.06 -6.05 16 3 C -0.14 -1.23 8.05 37.15 0.30 -0.93 16 4 C 0.14 2.11 4.56 -4.04 -0.02 2.10 16 5 N -0.74 -14.15 4.76 -60.29 -0.29 -14.44 16 6 C 0.54 12.16 7.04 -10.98 -0.08 12.09 16 7 O -0.56 -13.42 15.37 5.56 0.09 -13.33 16 8 C 0.02 0.44 1.89 -94.08 -0.18 0.27 16 9 H 0.07 1.70 4.87 -51.93 -0.25 1.45 16 10 C -0.51 -13.84 8.07 -34.44 -0.28 -14.12 16 11 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 12 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 13 N -0.88 -26.01 13.96 55.43 0.77 -25.23 16 14 Si 0.86 20.67 27.23 -169.99 -4.63 16.04 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.26 -5.79 6.06 56.52 0.34 -5.45 16 18 C -0.03 -0.61 4.11 -104.62 -0.43 -1.04 16 19 C -0.07 -1.65 8.26 -39.58 -0.33 -1.98 16 20 C -0.13 -2.52 10.05 -39.58 -0.40 -2.91 16 21 C -0.14 -2.60 10.05 -39.58 -0.40 -3.00 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.14 -2.87 9.50 -39.58 -0.38 -3.25 16 24 S 2.42 32.33 4.28 -107.50 -0.46 31.87 16 25 C -0.67 -5.17 9.72 101.05 0.98 -4.19 16 26 O -0.90 -16.41 15.63 -57.83 -0.90 -17.31 16 27 O -0.93 -15.67 17.91 -57.83 -1.04 -16.71 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 31 H 0.08 0.84 6.78 -51.93 -0.35 0.49 16 32 H 0.07 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.42 7.93 5.03 -40.82 -0.21 7.73 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.12 2.77 7.93 -52.49 -0.42 2.35 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 42 H 0.11 2.08 7.95 -52.48 -0.42 1.66 16 43 H 0.13 0.73 6.87 -51.92 -0.36 0.37 16 44 H 0.13 0.97 8.14 -51.92 -0.42 0.54 16 45 H 0.13 0.65 6.87 -51.92 -0.36 0.29 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -36.77 373.77 -8.72 -45.49 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.46 Total: 12.14 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.44 Total: -24.14 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.49 Total: -39.67 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.85 Total: -47.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.63 Total: 16.04 kcal Atomic # 16 Polarization: 32.33 SS G_CDS: -0.46 Total: 31.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.77 -8.72 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457022752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.692 kcal (2) G-P(sol) polarization free energy of solvation -36.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds