Wall clock time and date at job start Sat Apr 11 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47057 * 2 1 4 4 C 1.53001 * 109.46931 * 120.00211 * 2 1 3 5 5 N 1.46501 * 109.46943 * 180.02562 * 4 2 1 6 6 C 1.34779 * 119.99776 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00051 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.46859 * 59.99480 * 8 6 5 10 10 C 1.50701 * 109.46824 * 299.99865 * 8 6 5 11 11 H 1.08000 * 120.00335 * 325.09587 * 10 8 6 12 12 C 1.37881 * 119.99960 * 144.81992 * 10 8 6 13 13 N 1.31514 * 120.00014 * 184.97850 * 12 10 8 14 14 Si 1.86795 * 119.99833 * 4.98305 * 12 10 8 15 15 H 1.48504 * 109.47254 * 84.66745 * 14 12 10 16 16 H 1.48505 * 109.47074 * 204.66713 * 14 12 10 17 17 H 1.48496 * 109.47592 * 324.66399 * 14 12 10 18 18 C 1.50699 * 109.47408 * 179.97438 * 8 6 5 19 19 C 1.38236 * 119.99776 * 65.01117 * 18 8 6 20 20 C 1.38237 * 119.99232 * 179.81058 * 19 18 8 21 21 C 1.38235 * 120.00523 * 0.40278 * 20 19 18 22 22 C 1.38231 * 119.99761 * 359.85066 * 21 20 19 23 23 C 1.38234 * 119.99820 * 245.28865 * 18 8 6 24 24 S 1.81401 * 109.47266 * 239.99918 * 2 1 3 25 25 C 1.81401 * 101.92134 * 60.00209 * 24 2 1 26 26 O 1.42093 * 108.57787 * 174.48578 * 24 2 1 27 27 O 1.42100 * 108.57831 * 305.51489 * 24 2 1 28 28 H 1.08997 * 109.46773 * 300.00197 * 1 2 3 29 29 H 1.09002 * 109.46489 * 60.00059 * 1 2 3 30 30 H 1.08993 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47711 * 299.99817 * 3 2 1 33 33 H 1.09007 * 109.47549 * 60.00215 * 3 2 1 34 34 H 1.09004 * 109.47216 * 59.99856 * 4 2 1 35 35 H 1.09007 * 109.46618 * 299.99751 * 4 2 1 36 36 H 0.97000 * 119.99997 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99883 * 180.02562 * 13 12 10 38 38 H 1.07994 * 120.00341 * 0.02562 * 19 18 8 39 39 H 1.07999 * 119.99605 * 180.23421 * 20 19 18 40 40 H 1.07995 * 119.99991 * 179.83537 * 21 20 19 41 41 H 1.08004 * 120.00182 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00178 * 359.97438 * 23 18 8 43 43 H 1.08999 * 109.47510 * 59.99466 * 25 24 2 44 44 H 1.08999 * 109.47178 * 180.02562 * 25 24 2 45 45 H 1.09007 * 109.46878 * 300.00113 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5051 -0.7208 1.2495 6 6 4.1789 -1.3039 2.2607 7 8 3.5725 -1.8286 3.1705 8 6 5.6859 -1.3029 2.2614 9 1 6.0485 -0.2749 2.2614 10 6 6.1892 -2.0130 1.0312 11 1 5.6468 -2.8593 0.6362 12 6 7.3391 -1.5788 0.4065 13 7 7.7251 -2.1350 -0.7211 14 14 8.3489 -0.2007 1.1617 15 1 9.2748 -0.7644 2.1768 16 1 9.1333 0.4780 0.0989 17 1 7.4415 0.7800 1.8099 18 6 6.1882 -2.0123 3.4924 19 6 5.9427 -3.3623 3.6607 20 6 6.4069 -4.0138 4.7881 21 6 7.1094 -3.3137 5.7510 22 6 7.3504 -1.9627 5.5851 23 6 6.8896 -1.3119 4.4559 24 16 2.1348 -0.8551 -1.4811 25 6 1.4231 0.1515 -2.8118 26 8 3.5497 -0.7330 -1.5284 27 8 1.5480 -2.1485 -1.5284 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 1.2492 35 1 1.6767 -0.2074 2.1392 36 1 3.9901 -0.3008 0.5220 37 1 8.5343 -1.8298 -1.1603 38 1 5.3912 -3.9086 2.9099 39 1 6.2183 -5.0692 4.9178 40 1 7.4697 -3.8222 6.6330 41 1 7.8989 -1.4156 6.3377 42 1 7.0779 -0.2564 4.3263 43 1 1.7895 1.1747 -2.7291 44 1 1.7154 -0.2627 -3.7768 45 1 0.3362 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457022752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:36 Heat of formation + Delta-G solvation = -108.797978 kcal Electronic energy + Delta-G solvation = -28692.674483 eV Core-core repulsion = 24801.506983 eV Total energy + Delta-G solvation = -3891.167500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11668 -39.62278 -38.10999 -37.92630 -37.01775 -35.52215 -34.32088 -33.31741 -31.63783 -30.50268 -29.56901 -28.37142 -27.24892 -25.27131 -23.39124 -22.84135 -22.49747 -21.00405 -19.50949 -19.12420 -18.26720 -17.92652 -17.57765 -17.20934 -16.83543 -16.59525 -16.38042 -16.04923 -15.57468 -15.54279 -14.99924 -14.73223 -14.57649 -14.34325 -14.20467 -14.07544 -13.93925 -13.82395 -13.79640 -13.48070 -13.43431 -13.13416 -13.03126 -12.93433 -12.86938 -12.70636 -12.37737 -12.26839 -12.03679 -11.96665 -11.88349 -11.62517 -11.42454 -11.05891 -10.90795 -10.58795 -10.08857 -9.65367 -9.38431 -8.30613 -6.39208 -1.00899 0.63357 0.69493 1.29569 1.38282 1.43081 1.74324 1.77575 2.31222 2.32484 2.69324 2.97452 3.02654 3.15372 3.31630 3.56300 3.84073 4.05742 4.07804 4.17509 4.20680 4.24852 4.33803 4.37905 4.38581 4.56084 4.59234 4.65879 4.67566 4.74645 4.78879 4.81065 4.89494 4.93953 5.18801 5.20781 5.27634 5.30645 5.38550 5.48759 5.68719 5.73002 5.95087 6.20585 6.29569 6.56023 6.61623 7.24157 7.33814 8.85409 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.004437 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.779161 B = 6309.633885 C = 7299.216347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.529 4.529 3 C -0.147 4.147 4 C 0.130 3.870 5 N -0.736 5.736 6 C 0.531 3.469 7 O -0.581 6.581 8 C 0.020 3.980 9 H 0.083 0.917 10 C -0.502 4.502 11 H 0.026 0.974 12 C 0.031 3.969 13 N -0.930 5.930 14 Si 0.927 3.073 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.231 1.231 18 C -0.056 4.056 19 C -0.107 4.107 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.151 4.151 24 S 2.374 3.626 25 C -0.631 4.631 26 O -0.970 6.970 27 O -0.989 6.989 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.415 0.585 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.124 0.876 43 H 0.164 0.836 44 H 0.137 0.863 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 12.709 1.557 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.621 4.621 3 C -0.205 4.205 4 C 0.006 3.994 5 N -0.393 5.393 6 C 0.320 3.680 7 O -0.462 6.462 8 C -0.001 4.001 9 H 0.101 0.899 10 C -0.539 4.539 11 H 0.045 0.955 12 C -0.169 4.169 13 N -0.568 5.568 14 Si 0.749 3.251 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.154 1.154 18 C -0.057 4.057 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.169 4.169 24 S 2.562 3.438 25 C -0.784 4.784 26 O -0.967 6.967 27 O -0.986 6.986 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.142 0.858 43 H 0.183 0.817 44 H 0.155 0.845 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.267 11.551 1.964 17.700 hybrid contribution 0.495 0.375 -0.659 0.906 sum -12.772 11.926 1.306 17.523 Atomic orbital electron populations 1.21923 0.85671 1.04739 1.07450 1.29842 1.09142 1.09433 1.13725 1.22005 1.01754 0.89326 1.07409 1.21269 0.79987 1.00155 0.97982 1.46346 1.07046 1.59521 1.26393 1.21079 0.91029 0.75616 0.80321 1.90550 1.71347 1.46515 1.37746 1.18517 0.89422 0.98691 0.93489 0.89933 1.20381 1.10137 1.15324 1.08077 0.95545 1.25815 0.97842 0.99004 0.94210 1.70032 1.24694 1.44298 1.17746 0.86051 0.79783 0.80313 0.78913 1.18782 1.20555 1.15411 1.20074 0.96686 0.94684 0.94231 1.20811 0.99522 0.94747 0.97444 1.21337 0.99069 1.00488 0.94162 1.21355 0.99613 0.94656 0.99669 1.21381 0.99964 0.95261 0.97364 1.21242 1.00625 1.00108 0.94894 1.09104 0.76009 0.77816 0.80883 1.30115 1.15744 1.16528 1.16012 1.93629 1.29444 1.87425 1.86203 1.93509 1.79802 1.38457 1.86839 0.88000 0.86774 0.91338 0.92328 0.86668 0.88133 0.92588 0.88006 0.74458 0.92157 0.89927 0.84889 0.83006 0.83045 0.85787 0.81740 0.84462 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.22 71.98 0.59 -1.05 16 2 C -0.53 -10.88 0.62 -10.79 -0.01 -10.88 16 3 C -0.15 -2.14 8.05 71.98 0.58 -1.56 16 4 C 0.13 4.06 4.56 86.38 0.39 4.45 16 5 N -0.74 -30.02 4.76 -463.04 -2.20 -32.22 16 6 C 0.53 25.54 7.04 87.66 0.62 26.16 16 7 O -0.58 -29.56 15.37 -3.03 -0.05 -29.61 16 8 C 0.02 1.01 1.89 -13.03 -0.02 0.98 16 9 H 0.08 3.87 4.87 -2.39 -0.01 3.85 16 10 C -0.50 -29.60 8.07 25.60 0.21 -29.39 16 11 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 12 C 0.03 1.84 5.47 84.66 0.46 2.30 16 13 N -0.93 -58.87 13.96 21.45 0.30 -58.57 16 14 Si 0.93 43.19 27.23 68.60 1.87 45.06 16 15 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.23 -9.44 6.06 99.48 0.60 -8.83 16 18 C -0.06 -2.65 4.11 -19.87 -0.08 -2.73 16 19 C -0.11 -5.10 8.26 22.27 0.18 -4.92 16 20 C -0.13 -5.12 10.05 22.27 0.22 -4.90 16 21 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 22 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 23 C -0.15 -6.05 9.50 22.27 0.21 -5.83 16 24 S 2.37 66.03 4.28 -56.49 -0.24 65.79 16 25 C -0.63 -7.55 9.72 113.37 1.10 -6.45 16 26 O -0.97 -38.72 15.63 -127.37 -1.99 -40.71 16 27 O -0.99 -36.25 17.91 -127.37 -2.28 -38.54 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.38 6.56 -2.39 -0.02 0.36 16 30 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 31 H 0.06 1.16 6.78 -2.39 -0.02 1.14 16 32 H 0.11 0.63 6.56 -2.39 -0.02 0.61 16 33 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 36 H 0.42 17.10 5.03 -92.71 -0.47 16.64 16 37 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.08 4.36 7.93 -2.91 -0.02 4.34 16 39 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.12 4.45 7.95 -2.91 -0.02 4.43 16 43 H 0.16 0.94 6.87 -2.39 -0.02 0.92 16 44 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.17 0.73 6.87 -2.39 -0.02 0.72 16 Total: -1.00 -92.66 373.77 0.74 -91.92 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.43 Total: 38.77 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 4.91 Total: -41.88 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.90 Total: -90.79 kcal Atomic # 8 Polarization: -104.54 SS G_CDS: -4.32 Total: -108.86 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.87 Total: 45.06 kcal Atomic # 16 Polarization: 66.03 SS G_CDS: -0.24 Total: 65.79 kcal Total: -92.66 0.74 -91.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457022752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.882 kcal (2) G-P(sol) polarization free energy of solvation -92.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds