Wall clock time and date at job start Sat Apr 11 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46681 * 2 1 4 4 C 1.53000 * 109.46963 * 119.99428 * 2 1 3 5 5 N 1.46498 * 109.46840 * 180.02562 * 4 2 1 6 6 C 1.34777 * 119.99797 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00319 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99848 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.47670 * 322.83219 * 8 6 5 10 10 C 1.50703 * 109.46921 * 82.83086 * 8 6 5 11 11 H 1.08007 * 120.00145 * 54.80111 * 10 8 6 12 12 C 1.37874 * 120.00056 * 234.80009 * 10 8 6 13 13 N 1.31515 * 119.99774 * 175.67568 * 12 10 8 14 14 Si 1.86795 * 120.00111 * 355.67931 * 12 10 8 15 15 H 1.48499 * 109.47234 * 83.74215 * 14 12 10 16 16 H 1.48503 * 109.47119 * 203.74196 * 14 12 10 17 17 H 1.48495 * 109.46932 * 323.74080 * 14 12 10 18 18 C 1.50701 * 109.47204 * 202.82552 * 8 6 5 19 19 C 1.38242 * 119.99724 * 112.90953 * 18 8 6 20 20 C 1.38232 * 119.99991 * 180.02562 * 19 18 8 21 21 C 1.38235 * 119.99754 * 359.95886 * 20 19 18 22 22 C 1.38232 * 120.00239 * 359.97438 * 21 20 19 23 23 C 1.38226 * 120.00181 * 0.07613 * 22 21 20 24 24 S 1.81392 * 109.47264 * 239.99994 * 2 1 3 25 25 C 1.81399 * 101.92491 * 60.00151 * 24 2 1 26 26 O 1.42108 * 108.57488 * 174.48453 * 24 2 1 27 27 O 1.42096 * 108.57960 * 305.50813 * 24 2 1 28 28 H 1.09000 * 109.47286 * 299.99972 * 1 2 3 29 29 H 1.08997 * 109.46835 * 60.00568 * 1 2 3 30 30 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47007 * 300.00036 * 3 2 1 33 33 H 1.09000 * 109.47237 * 59.99998 * 3 2 1 34 34 H 1.09000 * 109.46915 * 60.00676 * 4 2 1 35 35 H 1.08999 * 109.47111 * 300.00572 * 4 2 1 36 36 H 0.96997 * 120.00010 * 359.97438 * 5 4 2 37 37 H 0.97000 * 120.00008 * 180.02562 * 13 12 10 38 38 H 1.08000 * 119.99806 * 359.97438 * 19 18 8 39 39 H 1.07997 * 119.99559 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99785 * 179.71897 * 21 20 19 41 41 H 1.08000 * 119.99789 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00161 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47450 * 59.99576 * 25 24 2 44 44 H 1.08999 * 109.47686 * 180.02562 * 25 24 2 45 45 H 1.09002 * 109.46923 * 299.99910 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5050 -0.7206 1.2496 6 6 4.1789 -1.3044 2.2603 7 8 3.5725 -1.8307 3.1693 8 6 5.6859 -1.3044 2.2603 9 1 6.0493 -1.4323 1.2407 10 6 6.1881 0.0050 2.8120 11 1 5.8598 0.3431 3.7838 12 6 7.0668 0.7714 2.0761 13 7 7.4388 1.9527 2.5187 14 14 7.7287 0.1321 0.4506 15 1 6.7521 0.4219 -0.6299 16 1 9.0188 0.8007 0.1441 17 1 7.9415 -1.3345 0.5453 18 6 6.1883 -2.4367 3.1185 19 6 6.8581 -3.4983 2.5394 20 6 7.3185 -4.5372 3.3265 21 6 7.1098 -4.5142 4.6928 22 6 6.4412 -3.4520 5.2720 23 6 5.9799 -2.4136 4.4849 24 16 2.1347 -0.8551 -1.4810 25 6 1.4231 0.1515 -2.8118 26 8 3.5498 -0.7329 -1.5283 27 8 1.5481 -2.1484 -1.5283 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 1.2493 35 1 1.6766 -0.2073 2.1392 36 1 3.9900 -0.3007 0.5221 37 1 8.0567 2.4921 2.0009 38 1 7.0210 -3.5163 1.4719 39 1 7.8414 -5.3667 2.8739 40 1 7.4655 -5.3281 5.3072 41 1 6.2778 -3.4342 6.3395 42 1 5.4572 -1.5839 4.9374 43 1 1.7894 1.1747 -2.7291 44 1 1.7154 -0.2627 -3.7768 45 1 0.3362 0.1470 -2.7292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457022754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:40 Heat of formation + Delta-G solvation = -84.822687 kcal Electronic energy + Delta-G solvation = -28629.682802 eV Core-core repulsion = 24739.554949 eV Total energy + Delta-G solvation = -3890.127853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.44166 -38.14892 -37.15844 -36.74876 -36.13019 -33.56672 -32.98359 -31.48992 -30.07688 -29.81141 -27.98291 -27.71078 -25.99909 -23.42941 -21.89563 -21.78096 -20.95020 -19.41507 -18.62870 -17.15757 -17.04234 -16.67647 -16.12714 -15.99885 -15.90524 -15.35565 -14.73288 -14.36049 -14.29154 -14.19971 -13.74999 -13.59980 -13.38387 -13.26240 -13.11690 -12.88477 -12.70173 -12.58308 -12.46818 -12.30736 -12.14545 -12.07980 -11.97850 -11.74067 -11.56960 -11.46176 -11.15040 -11.08649 -10.95165 -10.42142 -10.26545 -10.08838 -9.92359 -9.47883 -9.01779 -8.65908 -8.54823 -8.08136 -7.77487 -6.27071 -4.30099 -0.22018 2.19328 2.26515 2.49842 3.24672 3.30306 3.35524 3.44007 3.56971 3.64181 3.89295 4.17910 4.27639 4.29972 4.51345 4.63692 4.69817 4.74404 5.08997 5.11974 5.20631 5.32191 5.43848 5.46996 5.60381 5.62400 5.64246 5.73926 5.74706 5.79954 5.98305 6.03304 6.16520 6.27555 6.41197 6.46896 6.78731 6.91251 6.98043 7.22416 7.30891 7.33479 7.65111 7.84533 8.12732 8.32295 8.75246 9.09026 9.31047 10.83726 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004549 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.495467 B = 6154.045409 C = 6994.896608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.549 4.549 3 C -0.143 4.143 4 C 0.142 3.858 5 N -0.749 5.749 6 C 0.537 3.463 7 O -0.556 6.556 8 C 0.029 3.971 9 H 0.064 0.936 10 C -0.505 4.505 11 H 0.084 0.916 12 C 0.084 3.916 13 N -0.882 5.882 14 Si 0.856 3.144 15 H -0.259 1.259 16 H -0.284 1.284 17 H -0.259 1.259 18 C -0.032 4.032 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.069 4.069 24 S 2.414 3.586 25 C -0.661 4.661 26 O -0.925 6.925 27 O -0.933 6.933 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.409 0.591 37 H 0.269 0.731 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -1.919 -9.199 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.639 4.639 3 C -0.201 4.201 4 C 0.016 3.984 5 N -0.407 5.407 6 C 0.326 3.674 7 O -0.434 6.434 8 C 0.008 3.992 9 H 0.082 0.918 10 C -0.542 4.542 11 H 0.102 0.898 12 C -0.121 4.121 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.183 1.183 16 H -0.210 1.210 17 H -0.184 1.184 18 C -0.033 4.033 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.087 4.087 24 S 2.594 3.406 25 C -0.810 4.810 26 O -0.922 6.922 27 O -0.930 6.930 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.248 0.752 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.164 -2.859 -8.660 15.203 hybrid contribution 0.197 0.864 -1.175 1.472 sum -11.966 -1.995 -9.835 15.617 Atomic orbital electron populations 1.21746 0.88784 1.04351 1.04589 1.29995 1.06940 1.09500 1.17513 1.21859 1.03300 0.90455 1.04455 1.21000 0.82526 1.00026 0.94840 1.46412 1.05190 1.61350 1.27741 1.21531 0.91360 0.74560 0.79927 1.90569 1.70943 1.45965 1.35918 1.18391 0.88131 0.95630 0.97090 0.91772 1.20526 1.27741 1.00083 1.05822 0.89772 1.25030 0.95242 0.94269 0.97537 1.69863 1.33000 1.09990 1.38921 0.87121 0.79713 0.80370 0.84595 1.18345 1.20958 1.18394 1.19977 0.95461 0.93141 0.94700 1.21042 1.00420 0.94323 0.99321 1.20881 1.01471 0.98497 0.94033 1.20876 1.01585 0.98684 0.94869 1.21043 0.99819 0.95023 0.99132 1.20918 0.97065 0.97420 0.93299 1.08404 0.76513 0.77124 0.78510 1.30349 1.14038 1.17003 1.19567 1.93599 1.26522 1.86810 1.85258 1.93582 1.79438 1.34382 1.85629 0.89635 0.91056 0.90198 0.89781 0.91267 0.89462 0.90328 0.89323 0.75232 0.92115 0.87098 0.87227 0.87352 0.87124 0.86124 0.84904 0.85202 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.22 37.16 0.31 -0.68 16 2 C -0.55 -5.88 0.62 -90.62 -0.06 -5.94 16 3 C -0.14 -1.40 8.05 37.16 0.30 -1.11 16 4 C 0.14 2.12 4.56 -4.04 -0.02 2.10 16 5 N -0.75 -14.44 4.86 -60.29 -0.29 -14.73 16 6 C 0.54 12.31 6.93 -10.98 -0.08 12.23 16 7 O -0.56 -13.56 15.17 5.55 0.08 -13.48 16 8 C 0.03 0.71 2.22 -94.07 -0.21 0.50 16 9 H 0.06 1.53 4.57 -51.93 -0.24 1.29 16 10 C -0.50 -13.56 8.26 -34.44 -0.28 -13.85 16 11 H 0.08 2.48 7.72 -52.48 -0.41 2.08 16 12 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 13 N -0.88 -25.28 13.96 55.43 0.77 -24.51 16 14 Si 0.86 20.38 26.92 -169.99 -4.58 15.80 16 15 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.26 -6.02 6.82 56.52 0.39 -5.64 16 18 C -0.03 -0.74 4.54 -104.62 -0.47 -1.22 16 19 C -0.13 -2.80 9.67 -39.58 -0.38 -3.18 16 20 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 21 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 22 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 23 C -0.07 -1.55 8.03 -39.59 -0.32 -1.86 16 24 S 2.41 28.87 4.28 -107.50 -0.46 28.41 16 25 C -0.66 -4.41 9.72 101.05 0.98 -3.43 16 26 O -0.93 -14.79 15.63 -57.83 -0.90 -15.69 16 27 O -0.93 -13.81 17.91 -57.83 -1.04 -14.84 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 30 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.08 1.03 6.78 -51.93 -0.35 0.68 16 32 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.41 7.79 5.15 -40.82 -0.21 7.58 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.11 2.19 7.96 -52.49 -0.42 1.78 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 2.82 7.44 -52.49 -0.39 2.43 16 43 H 0.13 0.66 6.87 -51.93 -0.36 0.30 16 44 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.13 0.54 6.87 -51.92 -0.36 0.18 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -35.40 373.91 -8.66 -44.06 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.36 Total: 12.25 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -1.52 Total: -22.90 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.48 Total: -39.24 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.86 Total: -44.01 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.58 Total: 15.80 kcal Atomic # 16 Polarization: 28.87 SS G_CDS: -0.46 Total: 28.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.40 -8.66 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457022754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.760 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds