Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46681 * 2 1 4 4 C 1.53000 * 109.46963 * 119.99428 * 2 1 3 5 5 N 1.46498 * 109.46840 * 180.02562 * 4 2 1 6 6 C 1.34777 * 119.99797 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00319 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99848 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.47670 * 322.83219 * 8 6 5 10 10 C 1.50703 * 109.46921 * 82.83086 * 8 6 5 11 11 H 1.08007 * 120.00145 * 54.80111 * 10 8 6 12 12 C 1.37874 * 120.00056 * 234.80009 * 10 8 6 13 13 N 1.31515 * 119.99774 * 175.67568 * 12 10 8 14 14 Si 1.86795 * 120.00111 * 355.67931 * 12 10 8 15 15 H 1.48499 * 109.47234 * 83.74215 * 14 12 10 16 16 H 1.48503 * 109.47119 * 203.74196 * 14 12 10 17 17 H 1.48495 * 109.46932 * 323.74080 * 14 12 10 18 18 C 1.50701 * 109.47204 * 202.82552 * 8 6 5 19 19 C 1.38242 * 119.99724 * 112.90953 * 18 8 6 20 20 C 1.38232 * 119.99991 * 180.02562 * 19 18 8 21 21 C 1.38235 * 119.99754 * 359.95886 * 20 19 18 22 22 C 1.38232 * 120.00239 * 359.97438 * 21 20 19 23 23 C 1.38226 * 120.00181 * 0.07613 * 22 21 20 24 24 S 1.81392 * 109.47264 * 239.99994 * 2 1 3 25 25 C 1.81399 * 101.92491 * 60.00151 * 24 2 1 26 26 O 1.42108 * 108.57488 * 174.48453 * 24 2 1 27 27 O 1.42096 * 108.57960 * 305.50813 * 24 2 1 28 28 H 1.09000 * 109.47286 * 299.99972 * 1 2 3 29 29 H 1.08997 * 109.46835 * 60.00568 * 1 2 3 30 30 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47007 * 300.00036 * 3 2 1 33 33 H 1.09000 * 109.47237 * 59.99998 * 3 2 1 34 34 H 1.09000 * 109.46915 * 60.00676 * 4 2 1 35 35 H 1.08999 * 109.47111 * 300.00572 * 4 2 1 36 36 H 0.96997 * 120.00010 * 359.97438 * 5 4 2 37 37 H 0.97000 * 120.00008 * 180.02562 * 13 12 10 38 38 H 1.08000 * 119.99806 * 359.97438 * 19 18 8 39 39 H 1.07997 * 119.99559 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99785 * 179.71897 * 21 20 19 41 41 H 1.08000 * 119.99789 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00161 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47450 * 59.99576 * 25 24 2 44 44 H 1.08999 * 109.47686 * 180.02562 * 25 24 2 45 45 H 1.09002 * 109.46923 * 299.99910 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5050 -0.7206 1.2496 6 6 4.1789 -1.3044 2.2603 7 8 3.5725 -1.8307 3.1693 8 6 5.6859 -1.3044 2.2603 9 1 6.0493 -1.4323 1.2407 10 6 6.1881 0.0050 2.8120 11 1 5.8598 0.3431 3.7838 12 6 7.0668 0.7714 2.0761 13 7 7.4388 1.9527 2.5187 14 14 7.7287 0.1321 0.4506 15 1 6.7521 0.4219 -0.6299 16 1 9.0188 0.8007 0.1441 17 1 7.9415 -1.3345 0.5453 18 6 6.1883 -2.4367 3.1185 19 6 6.8581 -3.4983 2.5394 20 6 7.3185 -4.5372 3.3265 21 6 7.1098 -4.5142 4.6928 22 6 6.4412 -3.4520 5.2720 23 6 5.9799 -2.4136 4.4849 24 16 2.1347 -0.8551 -1.4810 25 6 1.4231 0.1515 -2.8118 26 8 3.5498 -0.7329 -1.5283 27 8 1.5481 -2.1484 -1.5283 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 1.2493 35 1 1.6766 -0.2073 2.1392 36 1 3.9900 -0.3007 0.5221 37 1 8.0567 2.4921 2.0009 38 1 7.0210 -3.5163 1.4719 39 1 7.8414 -5.3667 2.8739 40 1 7.4655 -5.3281 5.3072 41 1 6.2778 -3.4342 6.3395 42 1 5.4572 -1.5839 4.9374 43 1 1.7894 1.1747 -2.7291 44 1 1.7154 -0.2627 -3.7768 45 1 0.3362 0.1470 -2.7292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457022754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -111.571539 kcal Electronic energy + Delta-G solvation = -28630.842720 eV Core-core repulsion = 24739.554949 eV Total energy + Delta-G solvation = -3891.287771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12906 -39.64145 -38.18177 -37.95692 -37.12397 -35.53865 -34.38501 -33.38119 -31.64771 -30.52315 -29.61151 -28.41137 -27.34204 -25.28398 -23.38607 -22.86704 -22.52013 -21.08173 -19.61910 -19.16537 -18.28810 -17.94310 -17.61646 -17.23831 -16.92926 -16.69327 -16.45028 -15.84420 -15.75257 -15.56316 -14.99132 -14.74595 -14.62132 -14.46625 -14.17868 -14.13353 -13.97822 -13.83845 -13.73549 -13.64649 -13.34806 -13.21250 -13.10233 -12.94188 -12.89076 -12.79412 -12.41271 -12.29388 -12.08424 -11.97638 -11.94480 -11.70971 -11.45326 -11.12910 -10.96333 -10.65059 -10.14305 -9.66327 -9.40581 -8.40007 -6.47281 -1.06559 0.60821 0.68330 1.33100 1.35995 1.42410 1.66938 1.78792 2.24626 2.26485 2.57451 2.92264 2.98629 3.13158 3.25078 3.51436 3.81052 4.02831 4.05606 4.14587 4.19794 4.22409 4.33495 4.37489 4.39830 4.44928 4.57158 4.62503 4.63844 4.71757 4.77329 4.81497 4.87108 4.93904 5.17178 5.19653 5.26114 5.31063 5.34449 5.43132 5.67786 5.72656 5.92960 6.15621 6.27990 6.50094 6.55573 7.16536 7.30604 8.74816 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004549 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.495467 B = 6154.045409 C = 6994.896608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.535 4.535 3 C -0.149 4.149 4 C 0.130 3.870 5 N -0.742 5.742 6 C 0.529 3.471 7 O -0.579 6.579 8 C 0.028 3.972 9 H 0.065 0.935 10 C -0.502 4.502 11 H 0.039 0.961 12 C 0.040 3.960 13 N -0.925 5.925 14 Si 0.909 3.091 15 H -0.245 1.245 16 H -0.277 1.277 17 H -0.251 1.251 18 C -0.066 4.066 19 C -0.151 4.151 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.133 4.133 23 C -0.098 4.098 24 S 2.387 3.613 25 C -0.629 4.629 26 O -0.980 6.980 27 O -0.975 6.975 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.273 0.727 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.160 0.840 44 H 0.145 0.855 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 -2.716 -11.533 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.626 4.626 3 C -0.207 4.207 4 C 0.006 3.994 5 N -0.399 5.399 6 C 0.318 3.682 7 O -0.460 6.460 8 C 0.007 3.993 9 H 0.083 0.917 10 C -0.540 4.540 11 H 0.057 0.943 12 C -0.161 4.161 13 N -0.562 5.562 14 Si 0.731 3.269 15 H -0.169 1.169 16 H -0.202 1.202 17 H -0.175 1.175 18 C -0.067 4.067 19 C -0.169 4.169 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.116 4.116 24 S 2.574 3.426 25 C -0.783 4.783 26 O -0.977 6.977 27 O -0.973 6.973 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.249 0.751 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.109 0.891 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.233 -3.688 -10.980 17.586 hybrid contribution 0.422 1.108 -0.389 1.248 sum -12.811 -2.580 -11.369 17.321 Atomic orbital electron populations 1.21920 0.85562 1.05052 1.07235 1.29910 1.09325 1.09000 1.14392 1.21981 1.01472 0.90206 1.07015 1.21261 0.79865 1.00567 0.97716 1.46394 1.07269 1.59775 1.26447 1.21358 0.91269 0.75045 0.80532 1.90530 1.71230 1.47269 1.36933 1.18339 0.89046 0.94837 0.97092 0.91717 1.20433 1.27857 1.01587 1.04075 0.94257 1.25700 0.95322 0.94229 1.00816 1.69972 1.34211 1.11317 1.40702 0.86280 0.79518 0.80267 0.80830 1.16913 1.20199 1.17502 1.20024 0.97403 0.94206 0.95017 1.21269 1.00697 0.94725 1.00211 1.21354 1.00127 0.98345 0.94279 1.21385 0.99584 0.98785 0.95180 1.21376 0.99086 0.94353 1.00306 1.20850 0.98825 0.98239 0.93702 1.08725 0.75831 0.77719 0.80286 1.30106 1.15895 1.16399 1.15929 1.93529 1.30114 1.87687 1.86339 1.93530 1.79496 1.37680 1.86551 0.88817 0.86636 0.90546 0.92891 0.86374 0.89337 0.91048 0.89533 0.75063 0.91756 0.86405 0.83191 0.82835 0.84516 0.89136 0.82169 0.83644 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.22 71.98 0.59 -1.02 16 2 C -0.54 -10.91 0.62 -10.79 -0.01 -10.91 16 3 C -0.15 -2.69 8.05 71.98 0.58 -2.11 16 4 C 0.13 4.09 4.56 86.38 0.39 4.48 16 5 N -0.74 -30.40 4.86 -463.06 -2.25 -32.65 16 6 C 0.53 25.96 6.93 87.66 0.61 26.56 16 7 O -0.58 -30.29 15.17 -3.04 -0.05 -30.34 16 8 C 0.03 1.46 2.22 -13.03 -0.03 1.43 16 9 H 0.06 3.21 4.57 -2.39 -0.01 3.20 16 10 C -0.50 -28.91 8.26 25.60 0.21 -28.69 16 11 H 0.04 2.55 7.72 -2.91 -0.02 2.53 16 12 C 0.04 2.28 5.47 84.65 0.46 2.75 16 13 N -0.92 -55.40 13.96 21.45 0.30 -55.10 16 14 Si 0.91 42.91 26.92 68.60 1.85 44.76 16 15 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.25 -11.42 6.82 99.48 0.68 -10.74 16 18 C -0.07 -3.18 4.54 -19.86 -0.09 -3.27 16 19 C -0.15 -6.32 9.67 22.27 0.22 -6.10 16 20 C -0.12 -4.21 10.05 22.27 0.22 -3.98 16 21 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 22 C -0.13 -5.05 10.05 22.27 0.22 -4.83 16 23 C -0.10 -4.61 8.03 22.27 0.18 -4.43 16 24 S 2.39 54.69 4.28 -56.49 -0.24 54.45 16 25 C -0.63 -5.29 9.72 113.37 1.10 -4.19 16 26 O -0.98 -31.84 15.63 -127.37 -1.99 -33.83 16 27 O -0.98 -28.90 17.91 -127.37 -2.28 -31.18 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.12 0.32 6.56 -2.39 -0.02 0.31 16 30 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 31 H 0.05 1.31 6.78 -2.39 -0.02 1.29 16 32 H 0.12 0.92 6.56 -2.39 -0.02 0.90 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.41 16.56 5.15 -92.71 -0.48 16.08 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.12 4.63 7.96 -2.91 -0.02 4.61 16 39 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 42 H 0.09 4.67 7.44 -2.91 -0.02 4.65 16 43 H 0.16 0.61 6.87 -2.39 -0.02 0.59 16 44 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.17 0.24 6.87 -2.39 -0.02 0.23 16 Total: -1.00 -85.95 373.91 0.72 -85.22 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.50 Total: 37.07 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 4.89 Total: -38.39 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -1.95 Total: -87.75 kcal Atomic # 8 Polarization: -91.04 SS G_CDS: -4.32 Total: -95.35 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.85 Total: 44.76 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.24 Total: 54.45 kcal Total: -85.95 0.72 -85.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457022754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.349 kcal (2) G-P(sol) polarization free energy of solvation -85.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds