Wall clock time and date at job start Sat Apr 11 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.47082 * 119.99825 * 2 1 3 5 5 O 1.42897 * 109.46910 * 64.99948 * 4 2 1 6 6 C 1.42902 * 114.00209 * 179.97438 * 5 4 2 7 7 C 1.53494 * 114.20982 * 210.00302 * 6 5 4 8 8 N 1.47069 * 87.98234 * 220.14853 * 7 6 5 9 9 S 1.65598 * 136.05397 * 207.08476 * 8 7 6 10 10 O 1.42105 * 106.40472 * 336.46113 * 9 8 7 11 11 O 1.42104 * 106.40285 * 203.53918 * 9 8 7 12 12 C 1.76201 * 107.22017 * 89.99983 * 9 8 7 13 13 C 1.38661 * 119.87781 * 270.02242 * 12 9 8 14 14 C 1.38611 * 120.50174 * 179.97438 * 13 12 9 15 15 C 1.37633 * 120.25254 * 0.02562 * 14 13 12 16 16 C 1.40705 * 119.74106 * 359.74702 * 15 14 13 17 17 C 1.41396 * 120.24420 * 180.27933 * 16 15 14 18 18 H 1.08004 * 119.99746 * 204.51790 * 17 16 15 19 19 C 1.39947 * 119.99824 * 24.51337 * 17 16 15 20 20 N 1.30815 * 120.00517 * 17.73763 * 19 17 16 21 21 Si 1.86808 * 119.99688 * 197.74032 * 19 17 16 22 22 H 1.48504 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47144 * 120.00274 * 21 19 17 24 24 H 1.48505 * 109.46677 * 240.00279 * 21 19 17 25 25 C 1.37600 * 119.87974 * 89.99510 * 12 9 8 26 26 C 1.47061 * 87.88781 * 27.34030 * 8 7 6 27 27 H 1.08992 * 109.46858 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46630 * 300.00166 * 1 2 3 29 29 H 1.08998 * 109.47015 * 60.00149 * 1 2 3 30 30 H 1.09000 * 109.46657 * 240.00386 * 2 1 3 31 31 H 1.09004 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47390 * 299.99883 * 3 2 1 33 33 H 1.09000 * 109.47158 * 59.99655 * 3 2 1 34 34 H 1.09001 * 109.47273 * 305.00086 * 4 2 1 35 35 H 1.09000 * 109.46828 * 185.00139 * 4 2 1 36 36 H 1.09003 * 113.27579 * 343.06740 * 6 5 4 37 37 H 1.09004 * 113.46959 * 105.36883 * 7 6 5 38 38 H 1.09001 * 113.46951 * 334.92469 * 7 6 5 39 39 H 1.08001 * 119.74396 * 359.97438 * 13 12 9 40 40 H 1.08001 * 119.87439 * 180.02562 * 14 13 12 41 41 H 1.07995 * 120.13028 * 179.97438 * 15 14 13 42 42 H 0.96995 * 120.00754 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.11912 * 0.02562 * 25 12 9 44 44 H 1.09004 * 113.46450 * 87.43843 * 26 8 7 45 45 H 1.08996 * 113.47074 * 217.87823 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1920 6 6 2.0923 -2.8663 2.3175 7 6 2.3662 -4.3436 2.0036 8 7 1.7359 -4.6798 3.2891 9 16 1.8571 -5.9103 4.3908 10 8 2.3630 -7.0340 3.6833 11 8 0.6296 -5.9306 5.1064 12 6 3.1016 -5.4512 5.5507 13 6 4.4233 -5.8017 5.3206 14 6 5.4127 -5.4468 6.2241 15 6 5.0923 -4.7417 7.3618 16 6 3.7551 -4.3765 7.6033 17 6 3.4149 -3.6470 8.7658 18 1 2.4120 -3.7013 9.1631 19 6 4.3776 -2.8548 9.4015 20 7 5.4638 -2.5057 8.7615 21 14 4.1115 -2.2958 11.1640 22 1 2.8134 -2.8205 11.6590 23 1 5.2120 -2.8103 12.0179 24 1 4.0970 -0.8118 11.2157 25 6 2.7583 -4.7459 6.6812 26 6 0.9460 -3.4459 3.1626 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1264 -0.6442 1.2951 36 1 2.8770 -2.3795 2.8967 37 1 3.4274 -4.5893 1.9631 38 1 1.8140 -4.7134 1.1396 39 1 4.6837 -6.3553 4.4306 40 1 6.4391 -5.7246 6.0346 41 1 5.8648 -4.4666 8.0647 42 1 6.1309 -1.9564 9.2020 43 1 1.7282 -4.4739 6.8584 44 1 0.0194 -3.5790 2.6041 45 1 0.7972 -2.9266 4.1093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463435688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:47 Heat of formation + Delta-G solvation = -75.540328 kcal Electronic energy + Delta-G solvation = -27221.564035 eV Core-core repulsion = 23331.838695 eV Total energy + Delta-G solvation = -3889.725340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.72402 -37.67619 -37.41798 -36.67500 -35.33833 -34.73859 -33.88687 -30.11826 -29.82707 -28.01941 -27.36010 -26.02497 -25.80397 -25.51677 -21.98708 -21.20062 -21.02543 -20.35871 -18.61830 -18.08799 -17.14285 -17.05297 -16.04607 -15.93919 -15.53235 -15.27026 -14.94088 -14.72297 -14.48119 -13.97140 -13.63757 -13.51426 -13.38112 -13.34433 -12.88881 -12.62458 -12.49450 -12.32828 -11.97057 -11.84731 -11.66893 -11.60422 -11.59501 -11.43405 -11.42847 -11.40870 -11.10261 -11.02739 -10.93754 -10.89249 -10.75676 -10.62662 -9.80647 -9.66527 -9.49009 -9.39733 -8.90924 -8.07903 -7.74665 -6.96994 -4.57614 0.84835 2.15349 2.58752 2.97568 3.01211 3.04425 3.31348 3.64087 3.79788 4.25726 4.30484 4.38047 4.62671 4.66974 4.69361 4.78427 4.92023 5.08916 5.29306 5.31318 5.36641 5.39665 5.49331 5.55346 5.58489 5.64343 5.66602 5.73191 5.82332 5.86118 5.91220 6.07790 6.12894 6.13469 6.14466 6.54931 6.61351 6.72331 6.85532 7.00311 7.13168 7.17445 7.34379 7.68731 7.77030 7.90159 8.36434 8.62880 8.67720 9.98486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.003438 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.460196 B = 8141.682992 C =10007.763629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.062 3.938 5 O -0.370 6.370 6 C 0.049 3.951 7 C 0.131 3.869 8 N -1.041 6.041 9 S 2.716 3.284 10 O -0.968 6.968 11 O -0.964 6.964 12 C -0.630 4.630 13 C -0.147 4.147 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.125 4.125 26 C 0.114 3.886 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 6.817 -13.137 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.014 4.014 5 O -0.287 6.287 6 C -0.011 4.011 7 C 0.005 3.995 8 N -0.880 5.880 9 S 2.815 3.185 10 O -0.959 6.959 11 O -0.955 6.955 12 C -0.722 4.722 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.146 4.146 26 C -0.012 4.012 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.107 0.893 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.077 5.934 -13.146 14.989 hybrid contribution 0.775 0.845 1.418 1.824 sum -3.302 6.780 -11.728 13.943 Atomic orbital electron populations 1.21794 0.94581 1.02497 1.01349 1.21103 0.96770 0.95594 0.97906 1.21795 1.01158 0.95300 1.02199 1.22689 0.98696 0.81875 0.98166 1.87877 1.77998 1.20314 1.42549 1.24249 0.97246 0.91489 0.88110 1.22632 0.99131 0.91911 0.85793 1.59913 1.54289 1.40138 1.33631 1.00942 0.74021 0.71326 0.72261 1.93508 1.81833 1.47052 1.73492 1.93523 1.43768 1.85658 1.72574 1.29780 1.11834 1.16527 1.14066 1.20081 0.91167 1.04805 1.00800 1.20811 0.97250 1.00000 0.95925 1.21648 0.97657 0.97480 0.96980 1.17688 0.91340 0.90393 0.91782 1.19655 0.98201 1.23165 1.07882 0.89855 1.25934 0.94171 0.94336 0.99830 1.69776 1.08243 1.26924 1.36994 0.86210 0.79946 0.78747 0.81618 1.18181 1.19565 1.19841 1.20777 0.99017 1.01336 0.93489 1.22997 0.95514 0.82407 1.00308 0.91750 0.92812 0.92993 0.90420 0.92469 0.92145 0.92410 0.92918 0.93032 0.87542 0.89943 0.89237 0.87627 0.88330 0.85701 0.90615 0.87100 0.89323 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.09 37.16 0.34 -0.82 16 2 C -0.10 -0.77 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 4 C 0.06 0.59 5.16 37.16 0.19 0.78 16 5 O -0.37 -4.12 9.93 -35.23 -0.35 -4.47 16 6 C 0.05 0.59 4.68 -26.08 -0.12 0.47 16 7 C 0.13 1.68 8.57 -8.50 -0.07 1.60 16 8 N -1.04 -16.40 4.23 -125.04 -0.53 -16.93 16 9 S 2.72 53.17 6.27 -107.50 -0.67 52.50 16 10 O -0.97 -20.41 17.27 -57.17 -0.99 -21.39 16 11 O -0.96 -20.95 17.27 -57.17 -0.99 -21.94 16 12 C -0.63 -13.89 5.97 -39.66 -0.24 -14.13 16 13 C -0.15 -3.21 9.53 -39.29 -0.37 -3.59 16 14 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 16 C 0.09 2.34 5.57 -106.82 -0.60 1.75 16 17 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 18 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.28 10.95 55.55 0.61 -18.67 16 21 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.12 -2.99 9.26 -38.88 -0.36 -3.35 16 26 C 0.11 1.50 8.59 -8.37 -0.07 1.43 16 27 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 1.26 7.88 -51.93 -0.41 0.85 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.13 3.13 6.16 -52.49 -0.32 2.81 16 42 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 43 H 0.11 2.56 7.60 -52.48 -0.40 2.16 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -30.09 387.55 -11.51 -41.59 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.98 Total: 4.92 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.41 Total: -34.21 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.08 Total: -35.60 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -2.32 Total: -47.81 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.67 Total: 52.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.09 -11.51 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463435688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.948 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds