Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.47082 * 119.99825 * 2 1 3 5 5 O 1.42897 * 109.46910 * 64.99948 * 4 2 1 6 6 C 1.42902 * 114.00209 * 179.97438 * 5 4 2 7 7 C 1.53494 * 114.20982 * 210.00302 * 6 5 4 8 8 N 1.47069 * 87.98234 * 220.14853 * 7 6 5 9 9 S 1.65598 * 136.05397 * 207.08476 * 8 7 6 10 10 O 1.42105 * 106.40472 * 336.46113 * 9 8 7 11 11 O 1.42104 * 106.40285 * 203.53918 * 9 8 7 12 12 C 1.76201 * 107.22017 * 89.99983 * 9 8 7 13 13 C 1.38661 * 119.87781 * 270.02242 * 12 9 8 14 14 C 1.38611 * 120.50174 * 179.97438 * 13 12 9 15 15 C 1.37633 * 120.25254 * 0.02562 * 14 13 12 16 16 C 1.40705 * 119.74106 * 359.74702 * 15 14 13 17 17 C 1.41396 * 120.24420 * 180.27933 * 16 15 14 18 18 H 1.08004 * 119.99746 * 204.51790 * 17 16 15 19 19 C 1.39947 * 119.99824 * 24.51337 * 17 16 15 20 20 N 1.30815 * 120.00517 * 17.73763 * 19 17 16 21 21 Si 1.86808 * 119.99688 * 197.74032 * 19 17 16 22 22 H 1.48504 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47144 * 120.00274 * 21 19 17 24 24 H 1.48505 * 109.46677 * 240.00279 * 21 19 17 25 25 C 1.37600 * 119.87974 * 89.99510 * 12 9 8 26 26 C 1.47061 * 87.88781 * 27.34030 * 8 7 6 27 27 H 1.08992 * 109.46858 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46630 * 300.00166 * 1 2 3 29 29 H 1.08998 * 109.47015 * 60.00149 * 1 2 3 30 30 H 1.09000 * 109.46657 * 240.00386 * 2 1 3 31 31 H 1.09004 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47390 * 299.99883 * 3 2 1 33 33 H 1.09000 * 109.47158 * 59.99655 * 3 2 1 34 34 H 1.09001 * 109.47273 * 305.00086 * 4 2 1 35 35 H 1.09000 * 109.46828 * 185.00139 * 4 2 1 36 36 H 1.09003 * 113.27579 * 343.06740 * 6 5 4 37 37 H 1.09004 * 113.46959 * 105.36883 * 7 6 5 38 38 H 1.09001 * 113.46951 * 334.92469 * 7 6 5 39 39 H 1.08001 * 119.74396 * 359.97438 * 13 12 9 40 40 H 1.08001 * 119.87439 * 180.02562 * 14 13 12 41 41 H 1.07995 * 120.13028 * 179.97438 * 15 14 13 42 42 H 0.96995 * 120.00754 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.11912 * 0.02562 * 25 12 9 44 44 H 1.09004 * 113.46450 * 87.43843 * 26 8 7 45 45 H 1.08996 * 113.47074 * 217.87823 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1920 6 6 2.0923 -2.8663 2.3175 7 6 2.3662 -4.3436 2.0036 8 7 1.7359 -4.6798 3.2891 9 16 1.8571 -5.9103 4.3908 10 8 2.3630 -7.0340 3.6833 11 8 0.6296 -5.9306 5.1064 12 6 3.1016 -5.4512 5.5507 13 6 4.4233 -5.8017 5.3206 14 6 5.4127 -5.4468 6.2241 15 6 5.0923 -4.7417 7.3618 16 6 3.7551 -4.3765 7.6033 17 6 3.4149 -3.6470 8.7658 18 1 2.4120 -3.7013 9.1631 19 6 4.3776 -2.8548 9.4015 20 7 5.4638 -2.5057 8.7615 21 14 4.1115 -2.2958 11.1640 22 1 2.8134 -2.8205 11.6590 23 1 5.2120 -2.8103 12.0179 24 1 4.0970 -0.8118 11.2157 25 6 2.7583 -4.7459 6.6812 26 6 0.9460 -3.4459 3.1626 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1264 -0.6442 1.2951 36 1 2.8770 -2.3795 2.8967 37 1 3.4274 -4.5893 1.9631 38 1 1.8140 -4.7134 1.1396 39 1 4.6837 -6.3553 4.4306 40 1 6.4391 -5.7246 6.0346 41 1 5.8648 -4.4666 8.0647 42 1 6.1309 -1.9564 9.2020 43 1 1.7282 -4.4739 6.8584 44 1 0.0194 -3.5790 2.6041 45 1 0.7972 -2.9266 4.1093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463435688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -93.705323 kcal Electronic energy + Delta-G solvation = -27222.351728 eV Core-core repulsion = 23331.838695 eV Total energy + Delta-G solvation = -3890.513033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74808 -39.48046 -38.32718 -38.26910 -36.99491 -35.69652 -35.48900 -31.94670 -31.62389 -29.12120 -27.95148 -27.38198 -27.04261 -26.61065 -23.71917 -22.83266 -22.29640 -21.06187 -20.19756 -19.54220 -18.52905 -18.13487 -17.71258 -17.23897 -16.84583 -16.64751 -16.45641 -15.95258 -15.48464 -15.35086 -15.12269 -14.92047 -14.45058 -14.37154 -14.33790 -13.74276 -13.62500 -13.39680 -13.32539 -13.27724 -13.14827 -13.07342 -12.97944 -12.93159 -12.84239 -12.67794 -12.60518 -12.25013 -12.20357 -11.84450 -11.63542 -11.57862 -11.44686 -11.37627 -11.16905 -10.40712 -10.16594 -9.87149 -9.59374 -8.75638 -6.47685 -0.69572 0.36216 0.81061 1.36860 1.43269 1.51663 1.94539 2.16526 2.52680 2.68269 2.77379 3.09261 3.45823 3.47843 3.72265 3.95342 4.01888 4.14820 4.24477 4.29075 4.39956 4.52118 4.55296 4.58946 4.63022 4.67954 4.76980 4.79104 4.81340 4.87555 4.88502 4.93963 5.07020 5.08873 5.11557 5.20028 5.27874 5.37166 5.40098 5.47426 5.50597 5.53143 5.85503 5.90900 6.07122 6.26353 6.49668 6.76952 6.81598 8.22430 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.003438 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.460196 B = 8141.682992 C =10007.763629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.056 3.944 5 O -0.372 6.372 6 C 0.063 3.937 7 C 0.126 3.874 8 N -1.047 6.047 9 S 2.746 3.254 10 O -0.981 6.981 11 O -0.989 6.989 12 C -0.636 4.636 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.064 3.936 17 C -0.497 4.497 18 H 0.078 0.922 19 C 0.040 3.960 20 N -0.819 5.819 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.262 1.262 25 C -0.145 4.145 26 C 0.106 3.894 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.293 0.707 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 7.634 -14.265 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.021 4.021 5 O -0.289 6.289 6 C 0.002 3.998 7 C 0.002 3.998 8 N -0.888 5.888 9 S 2.842 3.158 10 O -0.972 6.972 11 O -0.980 6.980 12 C -0.725 4.725 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.061 3.939 17 C -0.525 4.525 18 H 0.096 0.904 19 C -0.176 4.176 20 N -0.444 5.444 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.187 1.187 25 C -0.166 4.166 26 C -0.019 4.019 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.817 6.754 -14.273 16.245 hybrid contribution 0.684 0.613 1.593 1.839 sum -3.133 7.367 -12.680 14.996 Atomic orbital electron populations 1.21783 0.94543 1.01902 1.01884 1.21113 0.96783 0.96191 0.97090 1.21782 1.01333 0.94398 1.02694 1.22873 0.99171 0.81030 0.98995 1.87873 1.78038 1.21151 1.41874 1.23998 0.96409 0.91356 0.88066 1.22932 0.99906 0.92264 0.84738 1.59548 1.55167 1.40166 1.33959 0.99901 0.72749 0.71344 0.71759 1.93483 1.81929 1.48312 1.73443 1.93487 1.44478 1.86339 1.73684 1.30230 1.13048 1.15094 1.14154 1.20448 0.90951 1.04218 1.01322 1.21141 0.99006 0.98856 0.94973 1.21659 0.97168 0.99035 0.98119 1.18033 0.92290 0.91077 0.92508 1.19872 0.98760 1.24815 1.09099 0.90432 1.26711 0.93562 0.93815 1.03516 1.69798 1.08882 1.27134 1.38616 0.85157 0.79714 0.78642 0.76258 1.18470 1.18691 1.18706 1.20826 0.98742 1.02727 0.94331 1.23283 0.96585 0.81242 1.00803 0.92867 0.92863 0.91922 0.90486 0.92203 0.91166 0.92422 0.92893 0.92515 0.87538 0.88969 0.87406 0.85185 0.85386 0.86719 0.89648 0.87401 0.87618 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.09 71.98 0.65 -1.42 16 2 C -0.09 -1.35 3.16 -10.79 -0.03 -1.38 16 3 C -0.14 -1.70 9.19 71.98 0.66 -1.03 16 4 C 0.06 0.96 5.16 71.98 0.37 1.33 16 5 O -0.37 -7.61 9.93 -148.98 -1.48 -9.09 16 6 C 0.06 1.39 4.68 31.01 0.15 1.53 16 7 C 0.13 2.95 8.57 83.18 0.71 3.66 16 8 N -1.05 -31.62 4.23 -550.01 -2.33 -33.94 16 9 S 2.75 105.74 6.27 -56.49 -0.35 105.38 16 10 O -0.98 -40.01 17.27 -128.00 -2.21 -42.22 16 11 O -0.99 -43.01 17.27 -128.00 -2.21 -45.22 16 12 C -0.64 -28.03 5.97 22.22 0.13 -27.90 16 13 C -0.15 -6.34 9.53 22.46 0.21 -6.12 16 14 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 15 C -0.14 -7.05 8.70 22.73 0.20 -6.85 16 16 C 0.06 3.39 5.57 -21.29 -0.12 3.28 16 17 C -0.50 -26.07 9.05 23.46 0.21 -25.85 16 18 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 19 C 0.04 1.92 5.14 85.26 0.44 2.36 16 20 N -0.82 -40.19 10.95 21.83 0.24 -39.95 16 21 Si 0.98 36.56 29.60 68.60 2.03 38.59 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 25 C -0.15 -7.15 9.26 22.73 0.21 -6.94 16 26 C 0.11 2.67 8.59 83.27 0.72 3.39 16 27 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 2.38 7.88 -2.39 -0.02 2.36 16 37 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 40 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.11 5.90 6.16 -2.91 -0.02 5.89 16 42 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 43 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 44 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.47 387.55 -0.60 -65.07 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.97 Total: 28.44 kcal Atomic # 6 Polarization: -71.80 SS G_CDS: 4.74 Total: -67.06 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.09 Total: -73.89 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -5.90 Total: -96.52 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 16 Polarization: 105.74 SS G_CDS: -0.35 Total: 105.38 kcal Total: -64.47 -0.60 -65.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463435688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.636 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds