Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99599 * 2 1 4 4 C 1.53003 * 109.46833 * 304.16608 * 3 2 1 5 5 C 1.50703 * 109.46839 * 184.16802 * 3 2 1 6 6 O 1.21293 * 119.99621 * 221.14474 * 5 3 2 7 7 N 1.34776 * 120.00209 * 41.14966 * 5 3 2 8 8 C 1.37102 * 119.99982 * 4.51988 * 7 5 3 9 9 H 1.07996 * 120.00338 * 308.25768 * 8 7 5 10 10 C 1.38957 * 119.99427 * 128.24406 * 8 7 5 11 11 N 1.31408 * 120.00007 * 4.11789 * 10 8 7 12 12 Si 1.86807 * 119.99590 * 184.11383 * 10 8 7 13 13 H 1.48496 * 109.46928 * 60.00303 * 12 10 8 14 14 H 1.48501 * 109.46464 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46849 * 300.00108 * 12 10 8 16 16 C 1.46499 * 120.00100 * 184.53033 * 7 5 3 17 17 C 1.52999 * 109.47271 * 89.99369 * 16 7 5 18 18 C 1.50699 * 109.46929 * 180.02562 * 17 16 7 19 19 O 1.20821 * 120.00323 * 0.02562 * 18 17 16 20 20 O 1.34232 * 119.99750 * 180.02562 * 18 17 16 21 21 C 1.50692 * 109.47144 * 64.16590 * 3 2 1 22 22 C 1.38223 * 120.01325 * 5.99464 * 21 3 2 23 23 C 1.38224 * 120.02661 * 180.02562 * 22 21 3 24 24 C 1.38266 * 120.05114 * 0.02562 * 23 22 21 25 25 C 1.38182 * 120.02654 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01424 * 186.01400 * 21 3 2 27 27 F 1.35096 * 120.02409 * 0.02562 * 26 21 3 28 28 H 1.09002 * 109.46692 * 176.83998 * 1 2 3 29 29 H 1.08992 * 109.47178 * 296.83649 * 1 2 3 30 30 H 1.09001 * 109.47329 * 56.84473 * 1 2 3 31 31 H 1.09007 * 109.46555 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47336 * 299.99909 * 4 3 2 33 33 H 1.09000 * 109.47353 * 60.00231 * 4 3 2 34 34 H 0.97004 * 119.99726 * 184.99662 * 11 10 8 35 35 H 1.09001 * 109.47035 * 209.99915 * 16 7 5 36 36 H 1.09006 * 109.46818 * 329.99081 * 16 7 5 37 37 H 1.08992 * 109.47505 * 300.00069 * 17 16 7 38 38 H 1.08997 * 109.46691 * 60.00367 * 17 16 7 39 39 H 0.96710 * 116.99486 * 180.02562 * 20 18 17 40 40 H 1.08003 * 119.98814 * 359.97438 * 22 21 3 41 41 H 1.07995 * 119.97297 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.98927 * 179.72024 * 24 23 22 43 43 H 1.07999 * 120.01200 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4774 2.1009 -1.1936 5 6 3.5091 1.1881 -0.1033 6 8 4.2212 1.9087 0.5637 7 7 4.0583 0.2825 -0.9367 8 6 3.2569 -0.4674 -1.7584 9 1 2.4187 -1.0100 -1.3469 10 6 3.5232 -0.5291 -3.1209 11 7 4.5887 0.0646 -3.6096 12 14 2.3663 -1.4562 -4.2575 13 1 1.0113 -0.8531 -4.1837 14 1 2.8705 -1.3730 -5.6518 15 1 2.2981 -2.8797 -3.8403 16 6 5.5115 0.0992 -0.9645 17 6 5.9098 -0.9733 0.0512 18 6 7.4048 -1.1614 0.0230 19 8 8.0821 -0.5046 -0.7317 20 8 7.9838 -2.0586 0.8363 21 6 1.6488 2.0162 1.2787 22 6 0.9715 1.3416 2.2770 23 6 0.6394 1.9933 3.4499 24 6 0.9839 3.3208 3.6257 25 6 1.6611 3.9973 2.6291 26 6 1.9948 3.3452 1.4540 27 9 2.6561 4.0059 0.4786 28 1 -0.3633 -1.0261 -0.0567 29 1 -0.3633 0.4639 0.9169 30 1 -0.3634 0.5620 -0.8603 31 1 1.9211 3.0966 -1.1938 32 1 1.7388 1.5868 -2.1185 33 1 0.3933 2.1858 -1.1189 34 1 4.7365 0.0836 -4.5682 35 1 5.8192 -0.2131 -1.9625 36 1 6.0011 1.0395 -0.7111 37 1 5.6021 -0.6610 1.0490 38 1 5.4202 -1.9135 -0.2024 39 1 8.9457 -2.1433 0.7825 40 1 0.7008 0.3050 2.1403 41 1 0.1106 1.4653 4.2295 42 1 0.7200 3.8304 4.5407 43 1 1.9304 5.0341 2.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606650932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -163.627378 kcal Electronic energy + Delta-G solvation = -31575.533606 eV Core-core repulsion = 27115.775349 eV Total energy + Delta-G solvation = -4459.758257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.41586 -40.07065 -39.69147 -38.18493 -36.96736 -35.74987 -34.93640 -32.12132 -31.76933 -30.68922 -30.30827 -28.87227 -26.88322 -25.13902 -24.22555 -23.20154 -22.46236 -21.35482 -20.18508 -19.14812 -17.85922 -17.53100 -17.30511 -16.56191 -16.04319 -15.71386 -15.62843 -15.34666 -15.08795 -15.01623 -14.59254 -14.46834 -14.37178 -13.94544 -13.48435 -13.43639 -12.91877 -12.67294 -12.54281 -12.41587 -12.29323 -12.02326 -11.95139 -11.65419 -11.42783 -11.39508 -11.17357 -11.09394 -10.99919 -10.92096 -10.62544 -10.39265 -10.22847 -10.06165 -9.98055 -9.28502 -8.90877 -8.78237 -8.46076 -8.30334 -7.36394 -6.29276 -4.17346 1.39594 1.45223 2.72747 3.13940 3.21920 3.23254 3.38753 3.66826 3.79589 4.12955 4.44315 4.64113 4.65714 4.93169 5.02295 5.02630 5.12088 5.42326 5.53621 5.63479 5.67489 5.70045 5.78334 5.83373 5.89216 6.00466 6.02527 6.11288 6.24258 6.26987 6.34719 6.39900 6.45581 6.53566 6.58892 6.86655 6.87867 6.95557 7.14439 7.41217 7.60059 7.70166 8.03638 8.36259 8.53282 9.09972 9.42053 9.89143 10.72487 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.005397 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.749721 B = 5187.265780 C = 6777.506182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.339 6.339 3 C 0.166 3.834 4 C -0.177 4.177 5 C 0.501 3.499 6 O -0.583 6.583 7 N -0.426 5.426 8 C -0.334 4.334 9 H 0.112 0.888 10 C 0.046 3.954 11 N -0.868 5.868 12 Si 0.912 3.088 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.123 3.877 17 C -0.123 4.123 18 C 0.483 3.517 19 O -0.514 6.514 20 O -0.525 6.525 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.143 4.143 24 C -0.096 4.096 25 C -0.166 4.166 26 C 0.143 3.857 27 F -0.124 7.124 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.270 0.730 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.400 0.600 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 0.004 9.354 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.257 6.257 3 C 0.123 3.877 4 C -0.234 4.234 5 C 0.288 3.712 6 O -0.467 6.467 7 N -0.144 5.144 8 C -0.462 4.462 9 H 0.129 0.871 10 C -0.160 4.160 11 N -0.505 5.505 12 Si 0.739 3.261 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.001 4.001 17 C -0.162 4.162 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.337 6.337 21 C -0.127 4.127 22 C -0.104 4.104 23 C -0.161 4.161 24 C -0.114 4.114 25 C -0.185 4.185 26 C 0.123 3.877 27 F -0.102 7.102 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.258 0.742 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.298 0.398 9.223 11.767 hybrid contribution 0.047 -0.216 -0.884 0.911 sum -7.250 0.182 8.339 11.051 Atomic orbital electron populations 1.23100 0.83214 1.02478 1.00528 1.88258 1.18187 1.24997 1.94298 1.20067 0.93126 0.83828 0.90710 1.22424 1.00125 1.01500 0.99366 1.19851 0.87320 0.81058 0.83017 1.90593 1.61738 1.45235 1.49152 1.43178 1.04732 1.32051 1.34411 1.19940 1.10814 1.27677 0.87764 0.87117 1.25706 0.95934 0.96302 0.98061 1.69719 1.24802 1.42192 1.13783 0.86243 0.80614 0.80102 0.79179 1.19708 1.21111 1.19734 1.21361 0.82638 0.95904 1.00179 1.21863 0.86133 1.04311 1.03881 1.23816 0.92397 0.75333 0.75947 1.90701 1.65653 1.45297 1.38460 1.84599 1.28583 1.58848 1.61674 1.20343 1.00967 0.93136 0.98277 1.21108 0.96694 1.00488 0.92088 1.21077 1.02395 0.95016 0.97637 1.20907 0.97705 0.94625 0.98172 1.21074 1.02995 1.01065 0.93402 1.17367 0.93693 0.90020 0.86604 1.91485 1.77957 1.80225 1.60582 0.89844 0.93525 0.93577 0.90853 0.88765 0.92494 0.91895 0.86036 0.91884 0.88894 0.87656 0.74231 0.84133 0.85747 0.85596 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.60 101.05 0.97 1.01 16 2 O -0.34 -6.39 6.46 -35.23 -0.23 -6.62 16 3 C 0.17 3.35 0.43 -92.92 -0.04 3.31 16 4 C -0.18 -3.43 7.73 37.16 0.29 -3.14 16 5 C 0.50 12.11 6.45 -10.98 -0.07 12.04 16 6 O -0.58 -15.28 13.94 5.55 0.08 -15.20 16 7 N -0.43 -10.48 2.47 -114.81 -0.28 -10.77 16 8 C -0.33 -8.10 6.85 -14.93 -0.10 -8.20 16 9 H 0.11 2.61 5.52 -52.49 -0.29 2.32 16 10 C 0.05 1.12 5.37 -17.47 -0.09 1.03 16 11 N -0.87 -22.85 11.16 55.50 0.62 -22.23 16 12 Si 0.91 19.14 29.56 -169.99 -5.02 14.11 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 C 0.12 2.98 4.31 -4.04 -0.02 2.96 16 17 C -0.12 -2.48 6.14 -27.88 -0.17 -2.65 16 18 C 0.48 9.12 8.33 36.00 0.30 9.42 16 19 O -0.51 -11.25 16.74 -18.75 -0.31 -11.56 16 20 O -0.53 -7.75 13.42 -39.26 -0.53 -8.28 16 21 C -0.13 -2.29 4.26 -104.56 -0.45 -2.73 16 22 C -0.09 -1.30 7.68 -39.59 -0.30 -1.60 16 23 C -0.14 -1.80 10.04 -39.58 -0.40 -2.19 16 24 C -0.10 -1.18 10.04 -39.59 -0.40 -1.58 16 25 C -0.17 -2.45 10.03 -39.51 -0.40 -2.84 16 26 C 0.14 2.61 6.16 -39.42 -0.24 2.37 16 27 F -0.12 -2.55 13.39 2.25 0.03 -2.52 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.59 4.91 -51.93 -0.25 0.33 16 30 H 0.05 0.65 6.17 -51.93 -0.32 0.33 16 31 H 0.07 1.47 5.86 -51.93 -0.30 1.16 16 32 H 0.09 2.01 6.96 -51.93 -0.36 1.65 16 33 H 0.06 0.93 6.42 -51.93 -0.33 0.59 16 34 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.12 3.22 5.65 -51.93 -0.29 2.92 16 36 H 0.06 1.65 7.32 -51.93 -0.38 1.27 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.40 3.95 9.10 45.56 0.41 4.36 16 40 H 0.14 1.96 5.51 -52.48 -0.29 1.67 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 43 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -31.68 352.24 -5.55 -37.23 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.08 Total: 13.35 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.12 Total: 7.19 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.34 Total: -33.00 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.99 Total: -41.67 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.03 Total: -2.52 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.68 -5.55 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606650932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.401 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds