Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99599 * 2 1 4 4 C 1.53003 * 109.46833 * 304.16608 * 3 2 1 5 5 C 1.50703 * 109.46839 * 184.16802 * 3 2 1 6 6 O 1.21293 * 119.99621 * 221.14474 * 5 3 2 7 7 N 1.34776 * 120.00209 * 41.14966 * 5 3 2 8 8 C 1.37102 * 119.99982 * 4.51988 * 7 5 3 9 9 H 1.07996 * 120.00338 * 308.25768 * 8 7 5 10 10 C 1.38957 * 119.99427 * 128.24406 * 8 7 5 11 11 N 1.31408 * 120.00007 * 4.11789 * 10 8 7 12 12 Si 1.86807 * 119.99590 * 184.11383 * 10 8 7 13 13 H 1.48496 * 109.46928 * 60.00303 * 12 10 8 14 14 H 1.48501 * 109.46464 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46849 * 300.00108 * 12 10 8 16 16 C 1.46499 * 120.00100 * 184.53033 * 7 5 3 17 17 C 1.52999 * 109.47271 * 89.99369 * 16 7 5 18 18 C 1.50699 * 109.46929 * 180.02562 * 17 16 7 19 19 O 1.20821 * 120.00323 * 0.02562 * 18 17 16 20 20 O 1.34232 * 119.99750 * 180.02562 * 18 17 16 21 21 C 1.50692 * 109.47144 * 64.16590 * 3 2 1 22 22 C 1.38223 * 120.01325 * 5.99464 * 21 3 2 23 23 C 1.38224 * 120.02661 * 180.02562 * 22 21 3 24 24 C 1.38266 * 120.05114 * 0.02562 * 23 22 21 25 25 C 1.38182 * 120.02654 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01424 * 186.01400 * 21 3 2 27 27 F 1.35096 * 120.02409 * 0.02562 * 26 21 3 28 28 H 1.09002 * 109.46692 * 176.83998 * 1 2 3 29 29 H 1.08992 * 109.47178 * 296.83649 * 1 2 3 30 30 H 1.09001 * 109.47329 * 56.84473 * 1 2 3 31 31 H 1.09007 * 109.46555 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47336 * 299.99909 * 4 3 2 33 33 H 1.09000 * 109.47353 * 60.00231 * 4 3 2 34 34 H 0.97004 * 119.99726 * 184.99662 * 11 10 8 35 35 H 1.09001 * 109.47035 * 209.99915 * 16 7 5 36 36 H 1.09006 * 109.46818 * 329.99081 * 16 7 5 37 37 H 1.08992 * 109.47505 * 300.00069 * 17 16 7 38 38 H 1.08997 * 109.46691 * 60.00367 * 17 16 7 39 39 H 0.96710 * 116.99486 * 180.02562 * 20 18 17 40 40 H 1.08003 * 119.98814 * 359.97438 * 22 21 3 41 41 H 1.07995 * 119.97297 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.98927 * 179.72024 * 24 23 22 43 43 H 1.07999 * 120.01200 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4774 2.1009 -1.1936 5 6 3.5091 1.1881 -0.1033 6 8 4.2212 1.9087 0.5637 7 7 4.0583 0.2825 -0.9367 8 6 3.2569 -0.4674 -1.7584 9 1 2.4187 -1.0100 -1.3469 10 6 3.5232 -0.5291 -3.1209 11 7 4.5887 0.0646 -3.6096 12 14 2.3663 -1.4562 -4.2575 13 1 1.0113 -0.8531 -4.1837 14 1 2.8705 -1.3730 -5.6518 15 1 2.2981 -2.8797 -3.8403 16 6 5.5115 0.0992 -0.9645 17 6 5.9098 -0.9733 0.0512 18 6 7.4048 -1.1614 0.0230 19 8 8.0821 -0.5046 -0.7317 20 8 7.9838 -2.0586 0.8363 21 6 1.6488 2.0162 1.2787 22 6 0.9715 1.3416 2.2770 23 6 0.6394 1.9933 3.4499 24 6 0.9839 3.3208 3.6257 25 6 1.6611 3.9973 2.6291 26 6 1.9948 3.3452 1.4540 27 9 2.6561 4.0059 0.4786 28 1 -0.3633 -1.0261 -0.0567 29 1 -0.3633 0.4639 0.9169 30 1 -0.3634 0.5620 -0.8603 31 1 1.9211 3.0966 -1.1938 32 1 1.7388 1.5868 -2.1185 33 1 0.3933 2.1858 -1.1189 34 1 4.7365 0.0836 -4.5682 35 1 5.8192 -0.2131 -1.9625 36 1 6.0011 1.0395 -0.7111 37 1 5.6021 -0.6610 1.0490 38 1 5.4202 -1.9135 -0.2024 39 1 8.9457 -2.1433 0.7825 40 1 0.7008 0.3050 2.1403 41 1 0.1106 1.4653 4.2295 42 1 0.7200 3.8304 4.5407 43 1 1.9304 5.0341 2.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606650932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -184.341808 kcal Electronic energy + Delta-G solvation = -31576.431851 eV Core-core repulsion = 27115.775349 eV Total energy + Delta-G solvation = -4460.656502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.81132 -41.59883 -41.17885 -39.66920 -38.35612 -37.23544 -36.77025 -33.84590 -33.32211 -32.26712 -31.56158 -30.20238 -28.16399 -27.02305 -25.89863 -24.54461 -23.60987 -22.79346 -21.73777 -20.92020 -19.47785 -19.02829 -18.60317 -18.02811 -17.61354 -17.23075 -17.03837 -16.90737 -16.49977 -16.43187 -16.18972 -16.04913 -15.68302 -15.33284 -15.11087 -14.94992 -14.33422 -14.28079 -14.06560 -13.87955 -13.66576 -13.60292 -13.29717 -13.12681 -12.87696 -12.78717 -12.76135 -12.63448 -12.56427 -12.28161 -12.19570 -12.09778 -11.86765 -11.65873 -11.59962 -10.94206 -10.48347 -10.38192 -9.80389 -9.51344 -9.27706 -8.18188 -6.11664 0.25533 0.32335 1.18344 1.47110 1.49419 1.58721 1.78029 2.07681 2.39732 2.64391 2.92709 3.11218 3.15460 3.48935 3.56791 3.92708 3.99522 4.06622 4.11726 4.23412 4.24765 4.45765 4.45880 4.50764 4.62815 4.65235 4.68727 4.74168 4.83239 4.93210 4.99012 5.03314 5.16493 5.26552 5.29755 5.40974 5.44428 5.50602 5.57921 5.75594 6.03072 6.14788 6.28381 6.61501 6.99820 7.19894 7.54405 8.01363 8.84092 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.005397 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.749721 B = 5187.265780 C = 6777.506182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.359 6.359 3 C 0.175 3.825 4 C -0.169 4.169 5 C 0.486 3.514 6 O -0.614 6.614 7 N -0.437 5.437 8 C -0.332 4.332 9 H 0.121 0.879 10 C 0.001 3.999 11 N -0.908 5.908 12 Si 0.975 3.025 13 H -0.260 1.260 14 H -0.294 1.294 15 H -0.260 1.260 16 C 0.127 3.873 17 C -0.113 4.113 18 C 0.495 3.505 19 O -0.550 6.550 20 O -0.506 6.506 21 C -0.151 4.151 22 C -0.092 4.092 23 C -0.129 4.129 24 C -0.083 4.083 25 C -0.170 4.170 26 C 0.100 3.900 27 F -0.151 7.151 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.267 0.733 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.426 0.574 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 -1.459 11.982 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.277 6.277 3 C 0.132 3.868 4 C -0.226 4.226 5 C 0.275 3.725 6 O -0.500 6.500 7 N -0.155 5.155 8 C -0.459 4.459 9 H 0.138 0.862 10 C -0.201 4.201 11 N -0.546 5.546 12 Si 0.799 3.201 13 H -0.184 1.184 14 H -0.220 1.220 15 H -0.185 1.185 16 C 0.003 3.997 17 C -0.152 4.152 18 C 0.339 3.661 19 O -0.440 6.440 20 O -0.320 6.320 21 C -0.152 4.152 22 C -0.110 4.110 23 C -0.147 4.147 24 C -0.101 4.101 25 C -0.189 4.189 26 C 0.081 3.919 27 F -0.130 7.130 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.288 0.712 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.002 -1.101 11.884 15.572 hybrid contribution 0.892 0.240 -1.546 1.800 sum -9.111 -0.861 10.338 13.807 Atomic orbital electron populations 1.23378 0.80607 1.04340 1.01581 1.88166 1.20901 1.24117 1.94542 1.19708 0.90228 0.84698 0.92204 1.22328 1.01962 1.00148 0.98178 1.20636 0.89546 0.80185 0.82180 1.90547 1.63219 1.46146 1.50112 1.43420 1.04718 1.32532 1.34808 1.20205 1.10676 1.27193 0.87836 0.86151 1.26505 0.97069 0.97053 0.99428 1.69893 1.26712 1.44336 1.13683 0.85262 0.78957 0.79340 0.76567 1.18422 1.21957 1.18475 1.21089 0.83015 0.95468 1.00082 1.21588 0.87682 1.03276 1.02608 1.23373 0.91753 0.75302 0.75698 1.90701 1.66238 1.46923 1.40174 1.84507 1.30894 1.56801 1.59791 1.20296 1.03194 0.93337 0.98392 1.21336 0.96398 1.00996 0.92280 1.21576 1.00777 0.95103 0.97194 1.21442 0.95402 0.94632 0.98600 1.21407 1.02825 1.02047 0.92592 1.17898 0.95495 0.90796 0.87690 1.91410 1.78943 1.80736 1.61923 0.87405 0.91494 0.93615 0.92494 0.91372 0.89397 0.92347 0.88428 0.95274 0.88506 0.86448 0.71198 0.83066 0.81568 0.81281 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.10 9.60 113.37 1.09 0.99 16 2 O -0.36 -13.18 6.46 -148.98 -0.96 -14.14 16 3 C 0.17 7.15 0.43 -12.29 -0.01 7.15 16 4 C -0.17 -6.74 7.73 71.98 0.56 -6.19 16 5 C 0.49 24.54 6.45 87.66 0.57 25.11 16 6 O -0.61 -33.99 13.94 -3.07 -0.04 -34.03 16 7 N -0.44 -22.45 2.47 -635.52 -1.57 -24.03 16 8 C -0.33 -16.42 6.85 84.04 0.58 -15.84 16 9 H 0.12 5.66 5.52 -2.91 -0.02 5.64 16 10 C 0.00 0.05 5.37 84.93 0.46 0.50 16 11 N -0.91 -50.08 11.16 21.66 0.24 -49.84 16 12 Si 0.98 39.41 29.56 68.60 2.03 41.44 16 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 14 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 16 C 0.13 6.55 4.31 86.38 0.37 6.92 16 17 C -0.11 -4.65 6.14 29.85 0.18 -4.47 16 18 C 0.50 18.79 8.33 71.24 0.59 19.39 16 19 O -0.55 -24.80 16.74 21.98 0.37 -24.43 16 20 O -0.51 -14.02 13.42 -51.44 -0.69 -14.71 16 21 C -0.15 -5.42 4.26 -19.82 -0.08 -5.50 16 22 C -0.09 -2.54 7.68 22.26 0.17 -2.37 16 23 C -0.13 -2.63 10.04 22.27 0.22 -2.41 16 24 C -0.08 -1.69 10.04 22.26 0.22 -1.47 16 25 C -0.17 -4.70 10.03 22.31 0.22 -4.47 16 26 C 0.10 3.70 6.16 22.38 0.14 3.84 16 27 F -0.15 -6.59 13.39 44.97 0.60 -5.98 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 1.47 4.91 -2.39 -0.01 1.46 16 30 H 0.05 1.18 6.17 -2.39 -0.01 1.17 16 31 H 0.06 2.43 5.86 -2.38 -0.01 2.41 16 32 H 0.07 3.02 6.96 -2.39 -0.02 3.01 16 33 H 0.09 2.85 6.42 -2.39 -0.02 2.83 16 34 H 0.27 14.17 8.32 -92.71 -0.77 13.40 16 35 H 0.10 5.50 5.65 -2.39 -0.01 5.49 16 36 H 0.03 1.64 7.32 -2.38 -0.02 1.62 16 37 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.12 4.53 8.14 -2.39 -0.02 4.51 16 39 H 0.43 7.40 9.10 -74.05 -0.67 6.73 16 40 H 0.15 3.74 5.51 -2.91 -0.02 3.72 16 41 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -74.61 352.24 5.67 -68.95 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.41 Total: 35.61 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 5.28 Total: 21.18 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.33 Total: -73.87 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -1.33 Total: -87.32 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.60 Total: -5.98 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -74.61 5.67 -68.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606650932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.396 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds