Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00027 * 2 1 4 4 C 1.52996 * 109.47548 * 54.42188 * 3 2 1 5 5 C 1.50698 * 109.47342 * 174.42390 * 3 2 1 6 6 O 1.21299 * 120.00078 * 140.60891 * 5 3 2 7 7 N 1.34771 * 120.00245 * 320.88598 * 5 3 2 8 8 C 1.37106 * 119.99922 * 4.45974 * 7 5 3 9 9 H 1.08001 * 119.99675 * 315.15140 * 8 7 5 10 10 C 1.38944 * 120.00394 * 135.14809 * 8 7 5 11 11 N 1.31418 * 119.99482 * 2.10258 * 10 8 7 12 12 Si 1.86798 * 120.00325 * 182.10197 * 10 8 7 13 13 H 1.48502 * 109.46756 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47186 * 120.00026 * 12 10 8 15 15 H 1.48496 * 109.47410 * 239.99973 * 12 10 8 16 16 C 1.46502 * 120.00422 * 184.46269 * 7 5 3 17 17 C 1.52996 * 109.47320 * 89.99870 * 16 7 5 18 18 C 1.50696 * 109.47160 * 180.02562 * 17 16 7 19 19 O 1.20826 * 120.00176 * 359.97438 * 18 17 16 20 20 O 1.34230 * 120.00087 * 179.97438 * 18 17 16 21 21 C 1.50705 * 109.47161 * 294.42500 * 3 2 1 22 22 C 1.38222 * 120.00663 * 354.49453 * 21 3 2 23 23 C 1.38224 * 120.02093 * 179.72410 * 22 21 3 24 24 C 1.38271 * 120.05252 * 0.55065 * 23 22 21 25 25 C 1.38177 * 120.02234 * 359.72589 * 24 23 22 26 26 C 1.38433 * 120.01489 * 174.76899 * 21 3 2 27 27 F 1.35103 * 120.02812 * 359.97438 * 26 21 3 28 28 H 1.08999 * 109.47082 * 62.76220 * 1 2 3 29 29 H 1.09000 * 109.46907 * 182.75992 * 1 2 3 30 30 H 1.08993 * 109.47366 * 302.75917 * 1 2 3 31 31 H 1.08997 * 109.47988 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47021 * 300.00813 * 4 3 2 33 33 H 1.09002 * 109.47308 * 60.00175 * 4 3 2 34 34 H 0.97006 * 119.99583 * 185.00491 * 11 10 8 35 35 H 1.09002 * 109.46840 * 209.99677 * 16 7 5 36 36 H 1.09000 * 109.46824 * 329.99631 * 16 7 5 37 37 H 1.09005 * 109.46844 * 300.00214 * 17 16 7 38 38 H 1.08993 * 109.47464 * 59.99752 * 17 16 7 39 39 H 0.96696 * 117.00368 * 179.97438 * 20 18 17 40 40 H 1.08002 * 119.99159 * 359.97438 * 22 21 3 41 41 H 1.08002 * 119.97697 * 180.29317 * 23 22 21 42 42 H 1.07997 * 119.99059 * 179.74394 * 24 23 22 43 43 H 1.08002 * 120.01093 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4510 2.1128 1.1732 5 6 3.5063 1.1892 0.1381 6 8 4.2329 1.9249 -0.4962 7 7 4.0373 0.2642 0.9619 8 6 3.2211 -0.6309 1.6042 9 1 2.3111 -0.2901 2.0755 10 6 3.5647 -1.9765 1.6488 11 7 4.6923 -2.3848 1.1112 12 14 2.4241 -3.2050 2.4727 13 1 1.2281 -2.4966 2.9953 14 1 2.0000 -4.2277 1.4830 15 1 3.1370 -3.8674 3.5944 16 6 5.4864 0.2151 1.1713 17 6 5.8616 1.1114 2.3531 18 6 7.3524 1.0614 2.5681 19 8 8.0437 0.3784 1.8501 20 8 7.9122 1.7755 3.5572 21 6 1.6778 2.0033 -1.2937 22 6 1.0139 1.3215 -2.2962 23 6 0.7039 1.9630 -3.4806 24 6 1.0673 3.2838 -3.6686 25 6 1.7361 3.9656 -2.6700 26 6 2.0422 3.3257 -1.4807 27 9 2.6956 3.9915 -0.5034 28 1 -0.3633 0.4703 -0.9137 29 1 -0.3633 -1.0265 0.0495 30 1 -0.3634 0.5560 0.8641 31 1 1.8940 3.1087 1.1730 32 1 0.3689 2.1968 1.0733 33 1 1.6914 1.6081 2.1089 34 1 4.8985 -3.3320 1.0776 35 1 5.7883 -0.8107 1.3831 36 1 5.9953 0.5656 0.2734 37 1 5.5596 2.1372 2.1413 38 1 5.3528 0.7610 3.2509 39 1 8.8719 1.7111 3.6563 40 1 0.7338 0.2884 -2.1524 41 1 0.1809 1.4310 -4.2616 42 1 0.8282 3.7828 -4.5960 43 1 2.0203 4.9971 -2.8171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606650934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -161.285002 kcal Electronic energy + Delta-G solvation = -31592.455458 eV Core-core repulsion = 27132.798774 eV Total energy + Delta-G solvation = -4459.656684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.43661 -40.05486 -39.67163 -38.18417 -36.92388 -35.73660 -34.96520 -32.03238 -31.75459 -30.69004 -30.30828 -28.95007 -26.85558 -25.15620 -24.20312 -23.22259 -22.43757 -21.35045 -20.19303 -19.10861 -17.83466 -17.51377 -17.27540 -16.61281 -16.01331 -15.73306 -15.60452 -15.33989 -15.11111 -14.99680 -14.66867 -14.41327 -14.21301 -13.98878 -13.58148 -13.30089 -12.78127 -12.68501 -12.55913 -12.46790 -12.30835 -12.19622 -11.94570 -11.63817 -11.48721 -11.26011 -11.20946 -11.09801 -11.06137 -10.91929 -10.63081 -10.32093 -10.24686 -10.03387 -9.95901 -9.26646 -8.91851 -8.77843 -8.44421 -8.29116 -7.47217 -6.20354 -4.05321 1.41631 1.47379 2.74510 3.16100 3.25078 3.28302 3.44343 3.61872 3.85301 4.17447 4.41593 4.64183 4.65280 4.91753 5.03332 5.12296 5.15865 5.44630 5.47348 5.61875 5.66522 5.72692 5.75438 5.78413 5.89485 5.95674 6.05202 6.08606 6.12315 6.25375 6.33173 6.40133 6.45239 6.49019 6.56614 6.64991 6.88559 6.98438 7.15502 7.42861 7.69505 7.73070 7.99726 8.37840 8.45875 9.13592 9.42279 9.86375 10.77957 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.005444 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.121712 B = 5141.769766 C = 7044.354313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.317 6.317 3 C 0.158 3.842 4 C -0.180 4.180 5 C 0.496 3.504 6 O -0.581 6.581 7 N -0.426 5.426 8 C -0.308 4.308 9 H 0.094 0.906 10 C 0.047 3.953 11 N -0.874 5.874 12 Si 0.917 3.083 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.285 1.285 16 C 0.112 3.888 17 C -0.123 4.123 18 C 0.483 3.517 19 O -0.512 6.512 20 O -0.526 6.526 21 C -0.125 4.125 22 C -0.082 4.082 23 C -0.143 4.143 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.141 3.859 27 F -0.126 7.126 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.269 0.731 35 H 0.140 0.860 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 7.579 -1.234 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.234 6.234 3 C 0.114 3.886 4 C -0.238 4.238 5 C 0.282 3.718 6 O -0.466 6.466 7 N -0.144 5.144 8 C -0.436 4.436 9 H 0.112 0.888 10 C -0.157 4.157 11 N -0.513 5.513 12 Si 0.744 3.256 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.211 1.211 16 C -0.012 4.012 17 C -0.162 4.162 18 C 0.325 3.675 19 O -0.400 6.400 20 O -0.338 6.338 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.161 4.161 24 C -0.114 4.114 25 C -0.186 4.186 26 C 0.122 3.878 27 F -0.105 7.105 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.258 0.742 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.410 7.419 -1.696 10.622 hybrid contribution 0.004 -0.437 0.577 0.724 sum -7.406 6.982 -1.120 10.239 Atomic orbital electron populations 1.23109 0.84026 1.02437 1.00047 1.88604 1.17219 1.23434 1.94157 1.20139 0.93390 0.84453 0.90578 1.22488 1.01019 1.01458 0.98797 1.19809 0.87449 0.83808 0.80734 1.90599 1.60559 1.47392 1.48003 1.43303 1.05377 1.27514 1.38195 1.19444 1.04353 0.87332 1.32461 0.88840 1.25440 0.95957 0.97941 0.96380 1.69531 1.21728 1.15886 1.44130 0.86028 0.80332 0.80620 0.78610 1.19283 1.20709 1.21091 1.21647 0.82197 1.03238 0.94099 1.21865 0.86418 1.03897 1.04014 1.23786 0.92397 0.75071 0.76226 1.90702 1.64558 1.39192 1.45514 1.84592 1.29192 1.66945 1.53038 1.20301 1.01079 0.93033 0.98253 1.21125 0.96426 1.00445 0.91960 1.21096 1.02334 0.95087 0.97561 1.20910 0.97659 0.94632 0.98181 1.21052 1.03245 1.01108 0.93219 1.17342 0.93971 0.90024 0.86497 1.91462 1.78424 1.79967 1.60614 0.93816 0.89856 0.94001 0.90603 0.91849 0.90081 0.92004 0.84326 0.92036 0.89054 0.87788 0.74240 0.84066 0.85713 0.85593 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.57 101.05 0.97 0.97 16 2 O -0.32 -6.34 6.69 -35.23 -0.24 -6.57 16 3 C 0.16 3.16 0.43 -92.92 -0.04 3.13 16 4 C -0.18 -3.11 7.65 37.16 0.28 -2.83 16 5 C 0.50 11.94 6.47 -10.99 -0.07 11.87 16 6 O -0.58 -15.20 13.81 5.54 0.08 -15.13 16 7 N -0.43 -10.50 2.53 -114.81 -0.29 -10.79 16 8 C -0.31 -7.48 6.87 -14.93 -0.10 -7.59 16 9 H 0.09 2.18 5.57 -52.49 -0.29 1.88 16 10 C 0.05 1.16 5.38 -17.47 -0.09 1.07 16 11 N -0.87 -23.27 10.75 55.50 0.60 -22.67 16 12 Si 0.92 19.47 29.56 -169.99 -5.02 14.44 16 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.11 2.72 4.33 -4.04 -0.02 2.70 16 17 C -0.12 -2.47 6.13 -27.89 -0.17 -2.64 16 18 C 0.48 9.16 8.33 36.00 0.30 9.46 16 19 O -0.51 -11.29 16.74 -18.75 -0.31 -11.60 16 20 O -0.53 -7.77 13.42 -39.26 -0.53 -8.30 16 21 C -0.12 -2.31 4.30 -104.55 -0.45 -2.76 16 22 C -0.08 -1.31 7.72 -39.59 -0.31 -1.62 16 23 C -0.14 -1.89 10.04 -39.57 -0.40 -2.29 16 24 C -0.10 -1.22 10.04 -39.59 -0.40 -1.62 16 25 C -0.17 -2.47 10.03 -39.51 -0.40 -2.86 16 26 C 0.14 2.55 6.16 -39.42 -0.24 2.31 16 27 F -0.13 -2.46 13.31 2.25 0.03 -2.43 16 28 H 0.04 0.58 5.04 -51.93 -0.26 0.32 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.57 6.18 -51.93 -0.32 0.25 16 31 H 0.08 1.32 5.91 -51.93 -0.31 1.01 16 32 H 0.06 0.93 6.42 -51.93 -0.33 0.59 16 33 H 0.08 1.42 6.72 -51.93 -0.35 1.07 16 34 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.14 3.70 5.12 -51.93 -0.27 3.44 16 36 H 0.06 1.62 7.32 -51.93 -0.38 1.24 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.40 3.97 9.10 45.56 0.41 4.38 16 40 H 0.14 2.19 5.56 -52.49 -0.29 1.90 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -32.20 351.43 -5.59 -37.79 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -4.06 Total: 12.67 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.13 Total: 7.29 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.31 Total: -33.46 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.00 Total: -41.60 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.03 Total: -2.43 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.20 -5.59 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606650934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.499 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds