Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 O 1.42894 * 109.47588 * 239.99840 * 2 1 3 5 5 C 1.53004 * 109.46716 * 119.99942 * 2 1 3 6 6 N 1.46497 * 109.47215 * 54.37758 * 5 2 1 7 7 C 1.46495 * 119.99686 * 275.21272 * 6 5 2 8 8 C 1.52992 * 117.50384 * 1.68397 * 7 6 5 9 9 C 1.52994 * 60.00251 * 252.51264 * 8 7 6 10 10 S 1.65602 * 119.99697 * 95.21110 * 6 5 2 11 11 O 1.42101 * 106.39919 * 148.69418 * 10 6 5 12 12 O 1.42097 * 106.40679 * 15.77721 * 10 6 5 13 13 C 1.76202 * 107.21728 * 262.23057 * 10 6 5 14 14 C 1.38633 * 119.75077 * 278.35310 * 13 10 6 15 15 C 1.37616 * 120.24707 * 180.30606 * 14 13 10 16 16 C 1.40720 * 119.74200 * 359.42050 * 15 14 13 17 17 C 1.41398 * 120.24096 * 180.30235 * 16 15 14 18 18 H 1.07996 * 120.00077 * 343.95040 * 17 16 15 19 19 C 1.39947 * 119.99854 * 163.95593 * 17 16 15 20 20 N 1.30827 * 119.99724 * 331.13058 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 151.13309 * 19 17 16 22 22 H 1.48500 * 109.47606 * 94.99349 * 21 19 17 23 23 H 1.48502 * 109.47333 * 214.99243 * 21 19 17 24 24 H 1.48502 * 109.46982 * 334.99011 * 21 19 17 25 25 C 1.40711 * 119.51306 * 0.27652 * 16 15 14 26 26 C 1.37616 * 119.74853 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47071 * 303.84284 * 1 2 3 28 28 H 1.09002 * 109.46766 * 63.83540 * 1 2 3 29 29 H 1.08994 * 109.46871 * 183.83909 * 1 2 3 30 30 H 1.09002 * 109.46872 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47528 * 299.99999 * 3 2 1 32 32 H 1.09004 * 109.46861 * 60.00251 * 3 2 1 33 33 H 0.96695 * 114.00634 * 177.43229 * 4 2 1 34 34 H 1.08997 * 109.47461 * 294.37391 * 5 2 1 35 35 H 1.09003 * 109.46799 * 174.38085 * 5 2 1 36 36 H 1.09006 * 115.54344 * 147.39809 * 7 6 5 37 37 H 1.09003 * 117.49498 * 0.02562 * 8 7 6 38 38 H 1.09000 * 117.49869 * 145.02239 * 8 7 6 39 39 H 1.09002 * 117.49958 * 252.51166 * 9 8 7 40 40 H 1.08998 * 117.52323 * 107.47858 * 9 8 7 41 41 H 1.07997 * 119.87938 * 0.02562 * 14 13 10 42 42 H 1.08001 * 120.13013 * 179.70045 * 15 14 13 43 43 H 0.97004 * 119.99620 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.12853 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.87861 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7213 1.2493 6 7 1.4442 -2.0578 1.3189 7 6 0.1207 -2.2394 1.9201 8 6 -0.6051 -0.9894 2.4215 9 6 -0.0137 -1.9838 3.4226 10 16 2.2669 -3.3633 0.7178 11 8 1.8868 -4.4779 1.5130 12 8 3.6162 -2.9478 0.5565 13 6 1.6442 -3.6718 -0.9014 14 6 0.4671 -4.3866 -1.0611 15 6 -0.0251 -4.6388 -2.3212 16 6 0.6647 -4.1577 -3.4494 17 6 0.1650 -4.4052 -4.7488 18 1 -0.5849 -5.1669 -4.9029 19 6 0.6424 -3.6633 -5.8352 20 7 1.0723 -2.4410 -5.6541 21 14 0.6658 -4.4183 -7.5436 22 1 -0.5670 -4.0285 -8.2741 23 1 1.8559 -3.9289 -8.2849 24 1 0.7272 -5.8977 -7.4302 25 6 1.8551 -3.4280 -3.2749 26 6 2.3322 -3.1930 -2.0057 27 1 -0.3633 0.5723 0.8535 28 1 -0.3633 0.4532 -0.9224 29 1 -0.3633 -1.0253 0.0688 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.9695 -0.6777 -1.2529 34 1 1.7612 -0.1526 2.1364 35 1 3.1253 -0.8093 1.2004 36 1 -0.4863 -3.0354 1.4887 37 1 -0.0980 -0.0318 2.3036 38 1 -1.6900 -0.9626 2.3198 39 1 -0.7096 -2.6112 3.9796 40 1 0.8826 -1.6809 3.9638 41 1 -0.0632 -4.7506 -0.1936 42 1 -0.9397 -5.1999 -2.4437 43 1 1.4029 -1.9267 -6.4072 44 1 2.3924 -3.0537 -4.1339 45 1 3.2458 -2.6335 -1.8694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645695642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -71.286592 kcal Electronic energy + Delta-G solvation = -29461.798517 eV Core-core repulsion = 25572.257632 eV Total energy + Delta-G solvation = -3889.540884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25776 -37.42459 -37.02074 -36.23444 -35.07216 -34.00127 -32.93273 -31.63879 -30.15212 -29.31650 -27.31324 -26.12101 -25.67184 -22.37925 -21.62991 -21.32059 -21.03073 -19.94333 -18.40331 -17.59317 -17.32686 -16.75520 -16.58889 -15.46651 -15.40204 -14.93274 -14.61944 -14.55455 -14.26638 -14.06072 -13.35244 -13.11796 -12.84988 -12.55564 -12.41622 -12.37914 -12.09454 -11.94456 -11.67400 -11.63335 -11.55574 -11.53192 -11.38681 -11.32765 -11.23076 -11.17199 -11.13824 -10.88976 -10.79079 -10.42611 -10.34300 -10.05184 -9.90218 -9.63491 -9.38860 -9.23593 -8.34289 -7.87430 -7.51090 -7.15098 -4.66449 1.27249 2.41728 2.89162 2.92961 3.02064 3.10672 3.55751 3.69759 3.88281 4.24557 4.55566 4.63161 4.73025 4.91443 4.94057 4.98907 5.12593 5.18632 5.25280 5.37440 5.54670 5.59619 5.61652 5.68180 5.74757 5.87953 6.00924 6.06288 6.09814 6.13342 6.19268 6.28192 6.30645 6.42413 6.64136 6.73901 6.79717 6.89648 7.12277 7.20995 7.44316 7.58949 7.80725 7.89374 8.06627 8.09908 8.43086 8.63111 8.80777 9.75632 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.004282 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.654269 B = 6537.412926 C = 7136.501837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.106 3.894 3 C -0.177 4.177 4 O -0.532 6.532 5 C 0.091 3.909 6 N -0.968 5.968 7 C 0.098 3.902 8 C -0.185 4.185 9 C -0.198 4.198 10 S 2.692 3.308 11 O -0.985 6.985 12 O -0.987 6.987 13 C -0.775 4.775 14 C 0.002 3.998 15 C -0.244 4.244 16 C 0.139 3.861 17 C -0.437 4.437 18 H 0.086 0.914 19 C 0.079 3.921 20 N -0.745 5.745 21 Si 0.907 3.093 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.197 4.197 26 C 0.021 3.979 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.369 0.631 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.288 0.712 44 H 0.117 0.883 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 7.740 9.133 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.063 3.937 3 C -0.235 4.235 4 O -0.338 6.338 5 C -0.035 4.035 6 N -0.799 5.799 7 C -0.009 4.009 8 C -0.224 4.224 9 C -0.238 4.238 10 S 2.794 3.206 11 O -0.975 6.975 12 O -0.978 6.978 13 C -0.873 4.873 14 C -0.018 4.018 15 C -0.265 4.265 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.366 5.366 21 Si 0.730 3.270 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.217 4.217 26 C 0.001 3.999 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.217 0.783 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.135 0.865 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.872 7.439 9.447 12.056 hybrid contribution 0.069 0.197 -1.300 1.316 sum -0.803 7.636 8.148 11.195 Atomic orbital electron populations 1.22112 0.92632 1.03787 1.01425 1.21637 0.95865 0.90170 0.86001 1.22472 1.01397 0.97031 1.02585 1.86936 1.26158 1.77874 1.42796 1.22047 0.98738 0.83888 0.98802 1.57311 1.27569 1.21131 1.73841 1.21250 0.85746 1.00431 0.93471 1.23631 1.00335 0.94928 1.03476 1.23468 1.03220 1.03553 0.93548 1.01294 0.72864 0.71734 0.74720 1.93479 1.84103 1.50014 1.69921 1.93427 1.33849 1.82645 1.87918 1.28916 1.13754 1.26892 1.17691 1.20024 0.92335 0.93006 0.96472 1.20875 1.01909 1.11326 0.92362 1.17749 0.89786 0.86838 0.92079 1.19905 1.19211 1.15819 0.91404 0.89568 1.26144 0.92344 0.93612 1.02457 1.69921 1.25056 1.06935 1.34677 0.86303 0.79028 0.81359 0.80315 1.19159 1.19541 1.17859 1.21189 0.98142 1.06730 0.95645 1.19949 0.95353 0.92598 0.92003 0.91393 0.92557 0.90356 0.92366 0.91508 0.92102 0.78345 0.90180 0.88901 0.85479 0.87481 0.88154 0.88371 0.88865 0.88757 0.88710 0.90047 0.86530 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.06 37.16 0.26 -1.66 16 2 C 0.11 1.42 1.18 -90.62 -0.11 1.31 16 3 C -0.18 -1.88 8.80 37.16 0.33 -1.56 16 4 O -0.53 -8.98 9.86 -35.23 -0.35 -9.33 16 5 C 0.09 1.20 4.60 -4.04 -0.02 1.19 16 6 N -0.97 -15.09 2.78 -107.31 -0.30 -15.38 16 7 C 0.10 1.36 4.48 -67.94 -0.30 1.05 16 8 C -0.19 -1.93 7.14 -26.74 -0.19 -2.12 16 9 C -0.20 -2.25 10.36 -26.73 -0.28 -2.53 16 10 S 2.69 53.30 5.54 -107.50 -0.60 52.71 16 11 O -0.98 -21.66 16.89 -57.17 -0.97 -22.62 16 12 O -0.99 -20.67 15.52 -57.17 -0.89 -21.56 16 13 C -0.78 -17.22 5.63 -39.29 -0.22 -17.44 16 14 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 15 C -0.24 -5.88 9.80 -38.87 -0.38 -6.26 16 16 C 0.14 3.58 5.64 -106.82 -0.60 2.97 16 17 C -0.44 -10.90 9.01 -37.74 -0.34 -11.24 16 18 H 0.09 2.05 7.99 -52.49 -0.42 1.63 16 19 C 0.08 1.84 4.96 -17.34 -0.09 1.75 16 20 N -0.75 -17.77 11.13 55.55 0.62 -17.15 16 21 Si 0.91 17.13 29.64 -169.99 -5.04 12.09 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 25 C -0.20 -4.95 8.80 -38.88 -0.34 -5.30 16 26 C 0.02 0.49 7.22 -39.66 -0.29 0.21 16 27 H 0.07 0.71 5.52 -51.93 -0.29 0.42 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.20 5.45 -51.93 -0.28 0.91 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.37 5.50 8.14 45.56 0.37 5.87 16 34 H 0.08 0.85 6.46 -51.93 -0.34 0.51 16 35 H 0.09 1.25 6.87 -51.93 -0.36 0.90 16 36 H 0.13 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.11 1.02 4.31 -51.93 -0.22 0.80 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.92 7.80 -52.49 -0.41 1.51 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 44 H 0.12 2.98 5.98 -52.48 -0.31 2.67 16 45 H 0.10 2.07 6.37 -52.49 -0.33 1.74 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -30.26 363.22 -10.52 -40.78 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -5.53 Total: 14.96 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: -2.94 Total: -39.96 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.32 Total: -32.54 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -2.20 Total: -53.51 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.04 Total: 12.09 kcal Atomic # 16 Polarization: 53.30 SS G_CDS: -0.60 Total: 52.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.26 -10.52 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645695642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.509 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds