Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 O 1.42894 * 109.47588 * 239.99840 * 2 1 3 5 5 C 1.53004 * 109.46716 * 119.99942 * 2 1 3 6 6 N 1.46497 * 109.47215 * 54.37758 * 5 2 1 7 7 C 1.46495 * 119.99686 * 275.21272 * 6 5 2 8 8 C 1.52992 * 117.50384 * 1.68397 * 7 6 5 9 9 C 1.52994 * 60.00251 * 252.51264 * 8 7 6 10 10 S 1.65602 * 119.99697 * 95.21110 * 6 5 2 11 11 O 1.42101 * 106.39919 * 148.69418 * 10 6 5 12 12 O 1.42097 * 106.40679 * 15.77721 * 10 6 5 13 13 C 1.76202 * 107.21728 * 262.23057 * 10 6 5 14 14 C 1.38633 * 119.75077 * 278.35310 * 13 10 6 15 15 C 1.37616 * 120.24707 * 180.30606 * 14 13 10 16 16 C 1.40720 * 119.74200 * 359.42050 * 15 14 13 17 17 C 1.41398 * 120.24096 * 180.30235 * 16 15 14 18 18 H 1.07996 * 120.00077 * 343.95040 * 17 16 15 19 19 C 1.39947 * 119.99854 * 163.95593 * 17 16 15 20 20 N 1.30827 * 119.99724 * 331.13058 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 151.13309 * 19 17 16 22 22 H 1.48500 * 109.47606 * 94.99349 * 21 19 17 23 23 H 1.48502 * 109.47333 * 214.99243 * 21 19 17 24 24 H 1.48502 * 109.46982 * 334.99011 * 21 19 17 25 25 C 1.40711 * 119.51306 * 0.27652 * 16 15 14 26 26 C 1.37616 * 119.74853 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47071 * 303.84284 * 1 2 3 28 28 H 1.09002 * 109.46766 * 63.83540 * 1 2 3 29 29 H 1.08994 * 109.46871 * 183.83909 * 1 2 3 30 30 H 1.09002 * 109.46872 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47528 * 299.99999 * 3 2 1 32 32 H 1.09004 * 109.46861 * 60.00251 * 3 2 1 33 33 H 0.96695 * 114.00634 * 177.43229 * 4 2 1 34 34 H 1.08997 * 109.47461 * 294.37391 * 5 2 1 35 35 H 1.09003 * 109.46799 * 174.38085 * 5 2 1 36 36 H 1.09006 * 115.54344 * 147.39809 * 7 6 5 37 37 H 1.09003 * 117.49498 * 0.02562 * 8 7 6 38 38 H 1.09000 * 117.49869 * 145.02239 * 8 7 6 39 39 H 1.09002 * 117.49958 * 252.51166 * 9 8 7 40 40 H 1.08998 * 117.52323 * 107.47858 * 9 8 7 41 41 H 1.07997 * 119.87938 * 0.02562 * 14 13 10 42 42 H 1.08001 * 120.13013 * 179.70045 * 15 14 13 43 43 H 0.97004 * 119.99620 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.12853 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.87861 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7213 1.2493 6 7 1.4442 -2.0578 1.3189 7 6 0.1207 -2.2394 1.9201 8 6 -0.6051 -0.9894 2.4215 9 6 -0.0137 -1.9838 3.4226 10 16 2.2669 -3.3633 0.7178 11 8 1.8868 -4.4779 1.5130 12 8 3.6162 -2.9478 0.5565 13 6 1.6442 -3.6718 -0.9014 14 6 0.4671 -4.3866 -1.0611 15 6 -0.0251 -4.6388 -2.3212 16 6 0.6647 -4.1577 -3.4494 17 6 0.1650 -4.4052 -4.7488 18 1 -0.5849 -5.1669 -4.9029 19 6 0.6424 -3.6633 -5.8352 20 7 1.0723 -2.4410 -5.6541 21 14 0.6658 -4.4183 -7.5436 22 1 -0.5670 -4.0285 -8.2741 23 1 1.8559 -3.9289 -8.2849 24 1 0.7272 -5.8977 -7.4302 25 6 1.8551 -3.4280 -3.2749 26 6 2.3322 -3.1930 -2.0057 27 1 -0.3633 0.5723 0.8535 28 1 -0.3633 0.4532 -0.9224 29 1 -0.3633 -1.0253 0.0688 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.9695 -0.6777 -1.2529 34 1 1.7612 -0.1526 2.1364 35 1 3.1253 -0.8093 1.2004 36 1 -0.4863 -3.0354 1.4887 37 1 -0.0980 -0.0318 2.3036 38 1 -1.6900 -0.9626 2.3198 39 1 -0.7096 -2.6112 3.9796 40 1 0.8826 -1.6809 3.9638 41 1 -0.0632 -4.7506 -0.1936 42 1 -0.9397 -5.1999 -2.4437 43 1 1.4029 -1.9267 -6.4072 44 1 2.3924 -3.0537 -4.1339 45 1 3.2458 -2.6335 -1.8694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645695642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -91.547292 kcal Electronic energy + Delta-G solvation = -29462.677087 eV Core-core repulsion = 25572.257632 eV Total energy + Delta-G solvation = -3890.419454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32612 -39.24992 -38.36207 -37.62897 -36.75090 -35.79303 -34.06639 -32.76856 -31.98273 -31.17171 -28.28250 -27.56666 -27.10429 -23.26548 -23.23146 -22.86711 -22.59289 -21.10944 -19.77218 -19.39847 -18.78294 -18.23719 -17.91383 -17.13517 -16.74473 -16.14180 -15.89342 -15.74996 -15.65471 -15.40390 -15.12376 -14.87902 -14.12651 -13.95736 -13.83803 -13.60420 -13.41674 -13.31109 -13.14487 -13.03227 -12.98382 -12.88378 -12.86162 -12.76013 -12.56854 -12.50005 -12.44940 -12.38309 -12.03042 -11.88562 -11.47005 -11.38305 -11.22051 -11.10482 -10.98423 -10.86190 -9.76377 -9.47194 -9.37507 -8.90891 -6.54682 -0.27741 0.64362 1.20636 1.33752 1.42097 1.52799 2.10777 2.15730 2.51578 2.86019 3.10739 3.45419 3.50428 3.66556 3.86275 3.96496 3.98640 4.06453 4.17732 4.23529 4.29475 4.35510 4.44421 4.63775 4.71029 4.79899 4.86505 4.93109 4.98138 5.00610 5.09317 5.12111 5.14207 5.19374 5.30439 5.33561 5.37034 5.38680 5.56893 5.58981 5.71208 5.79381 5.93250 6.02226 6.22449 6.57039 6.75806 6.93357 6.97946 8.04183 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.004282 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.654269 B = 6537.412926 C = 7136.501837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.099 3.901 3 C -0.169 4.169 4 O -0.564 6.564 5 C 0.087 3.913 6 N -0.959 5.959 7 C 0.055 3.945 8 C -0.159 4.159 9 C -0.188 4.188 10 S 2.719 3.281 11 O -1.006 7.006 12 O -1.000 7.000 13 C -0.786 4.786 14 C -0.001 4.001 15 C -0.267 4.267 16 C 0.111 3.889 17 C -0.471 4.471 18 H 0.087 0.913 19 C 0.043 3.957 20 N -0.775 5.775 21 Si 0.982 3.018 22 H -0.256 1.256 23 H -0.261 1.261 24 H -0.258 1.258 25 C -0.223 4.223 26 C 0.025 3.975 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.372 0.628 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.299 0.701 44 H 0.105 0.895 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 9.352 10.662 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.057 3.943 3 C -0.228 4.228 4 O -0.371 6.371 5 C -0.038 4.038 6 N -0.793 5.793 7 C -0.052 4.052 8 C -0.198 4.198 9 C -0.227 4.227 10 S 2.818 3.182 11 O -0.997 6.997 12 O -0.991 6.991 13 C -0.880 4.880 14 C -0.021 4.021 15 C -0.287 4.287 16 C 0.107 3.893 17 C -0.497 4.497 18 H 0.105 0.895 19 C -0.179 4.179 20 N -0.397 5.397 21 Si 0.801 3.199 22 H -0.180 1.180 23 H -0.185 1.185 24 H -0.181 1.181 25 C -0.243 4.243 26 C 0.005 3.995 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.220 0.780 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.144 9.044 10.951 14.249 hybrid contribution 0.132 -0.213 -1.585 1.604 sum -1.013 8.832 9.366 12.913 Atomic orbital electron populations 1.22171 0.92836 1.02883 1.01999 1.21877 0.95756 0.91667 0.85005 1.22393 1.01964 0.94898 1.03497 1.86912 1.26619 1.78841 1.44737 1.22308 0.98589 0.82750 1.00171 1.56848 1.28377 1.20905 1.73128 1.21472 0.85211 1.02951 0.95540 1.23745 1.01158 0.94125 1.00738 1.23563 1.03717 1.03535 0.91932 1.00434 0.72420 0.72009 0.73379 1.93446 1.84457 1.52065 1.69729 1.93402 1.34871 1.82953 1.87837 1.29443 1.13044 1.25947 1.19543 1.20289 0.92627 0.92549 0.96618 1.21074 1.02573 1.12260 0.92802 1.18094 0.90421 0.87627 0.93116 1.20162 1.20499 1.16839 0.92245 0.89526 1.26981 0.91333 0.93577 1.06028 1.69933 1.25290 1.08041 1.36395 0.85191 0.79613 0.79968 0.75092 1.17998 1.18503 1.18131 1.21195 0.98699 1.08230 0.96174 1.20100 0.95688 0.92015 0.91664 0.87774 0.94553 0.92402 0.91512 0.92499 0.89249 0.77958 0.86384 0.89111 0.86919 0.85980 0.86540 0.87275 0.88197 0.86835 0.87981 0.89010 0.87729 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 7.06 71.98 0.51 -3.09 16 2 C 0.10 2.48 1.18 -10.79 -0.01 2.47 16 3 C -0.17 -3.15 8.80 71.98 0.63 -2.52 16 4 O -0.56 -19.17 9.86 -148.98 -1.47 -20.64 16 5 C 0.09 2.05 4.60 86.38 0.40 2.45 16 6 N -0.96 -28.32 2.78 -493.41 -1.37 -29.69 16 7 C 0.05 1.40 4.48 44.99 0.20 1.60 16 8 C -0.16 -2.71 7.14 30.59 0.22 -2.49 16 9 C -0.19 -3.62 10.36 30.59 0.32 -3.30 16 10 S 2.72 106.54 5.54 -56.49 -0.31 106.23 16 11 O -1.01 -43.84 16.89 -128.00 -2.16 -46.01 16 12 O -1.00 -41.29 15.52 -128.00 -1.99 -43.28 16 13 C -0.79 -35.62 5.63 22.46 0.13 -35.49 16 14 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 15 C -0.27 -13.41 9.80 22.73 0.22 -13.19 16 16 C 0.11 5.98 5.64 -21.29 -0.12 5.86 16 17 C -0.47 -24.54 9.01 23.46 0.21 -24.32 16 18 H 0.09 4.31 7.99 -2.91 -0.02 4.29 16 19 C 0.04 2.05 4.96 85.26 0.42 2.47 16 20 N -0.78 -38.12 11.13 21.83 0.24 -37.87 16 21 Si 0.98 35.48 29.64 68.60 2.03 37.51 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 25 C -0.22 -11.77 8.80 22.73 0.20 -11.57 16 26 C 0.03 1.21 7.22 22.22 0.16 1.37 16 27 H 0.10 1.78 5.52 -2.39 -0.01 1.77 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.71 5.45 -2.39 -0.01 1.70 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 33 H 0.37 11.29 8.14 -74.06 -0.60 10.68 16 34 H 0.12 1.93 6.46 -2.39 -0.02 1.91 16 35 H 0.09 2.23 6.87 -2.39 -0.02 2.22 16 36 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 37 H 0.12 1.69 4.31 -2.39 -0.01 1.68 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.11 4.70 7.80 -2.91 -0.02 4.68 16 42 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 44 H 0.10 5.66 5.98 -2.91 -0.02 5.64 16 45 H 0.11 4.85 6.37 -2.91 -0.02 4.83 16 Total: -1.00 -68.08 363.22 -0.91 -68.99 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: 0.42 Total: 44.35 kcal Atomic # 6 Polarization: -83.29 SS G_CDS: 3.70 Total: -79.59 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.13 Total: -67.57 kcal Atomic # 8 Polarization: -104.31 SS G_CDS: -5.62 Total: -109.92 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Atomic # 16 Polarization: 106.54 SS G_CDS: -0.31 Total: 106.23 kcal Total: -68.08 -0.91 -68.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645695642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.555 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds