Wall clock time and date at job start Sat Apr 11 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.99007 * 2 1 4 4 O 1.43740 * 109.87806 * 238.91108 * 2 1 3 5 5 C 1.44378 * 106.97602 * 267.08973 * 4 2 1 6 6 C 1.54995 * 103.49332 * 319.94191 * 5 4 2 7 7 C 1.54103 * 109.87777 * 121.07949 * 2 1 3 8 8 H 1.09004 * 110.60084 * 358.66618 * 7 2 1 9 9 C 1.52995 * 110.49160 * 236.07210 * 7 2 1 10 10 N 1.46498 * 109.47416 * 178.78313 * 9 7 2 11 11 S 1.65595 * 120.00113 * 165.00175 * 10 9 7 12 12 O 1.42103 * 106.40162 * 311.45451 * 11 10 9 13 13 O 1.42104 * 106.40191 * 178.53952 * 11 10 9 14 14 C 1.76197 * 107.22033 * 64.99854 * 11 10 9 15 15 C 1.38629 * 119.75060 * 90.00242 * 14 11 10 16 16 C 1.37624 * 120.24650 * 180.02562 * 15 14 11 17 17 C 1.40709 * 119.74609 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24474 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00017 * 155.57121 * 18 17 16 20 20 C 1.39945 * 119.99955 * 335.30142 * 18 17 16 21 21 N 1.30820 * 120.00086 * 342.55190 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 162.55208 * 20 18 17 23 23 H 1.48497 * 109.47547 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46828 * 119.99994 * 22 20 18 25 25 H 1.48502 * 109.46817 * 239.99969 * 22 20 18 26 26 C 1.40718 * 119.51124 * 0.26996 * 17 16 15 27 27 C 1.37612 * 119.74589 * 359.43093 * 26 17 16 28 28 H 1.09005 * 109.47328 * 298.91960 * 1 2 3 29 29 H 1.08994 * 109.47191 * 58.91646 * 1 2 3 30 30 H 1.08997 * 109.47643 * 178.91615 * 1 2 3 31 31 H 1.09002 * 109.47108 * 181.08510 * 3 2 1 32 32 H 1.09002 * 109.47098 * 301.07856 * 3 2 1 33 33 H 1.08999 * 109.47525 * 61.08588 * 3 2 1 34 34 H 1.09005 * 110.61404 * 201.44053 * 5 4 2 35 35 H 1.08994 * 110.61893 * 78.44108 * 5 4 2 36 36 H 1.09009 * 110.90816 * 278.82725 * 6 5 4 37 37 H 1.08997 * 110.90832 * 155.22352 * 6 5 4 38 38 H 1.08999 * 109.47402 * 58.77530 * 9 7 2 39 39 H 1.09006 * 109.46908 * 298.78164 * 9 7 2 40 40 H 0.97000 * 119.99528 * 344.99164 * 10 9 7 41 41 H 1.07998 * 119.88148 * 0.02562 * 15 14 11 42 42 H 1.08005 * 120.12321 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00216 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.12485 * 179.70167 * 26 17 16 45 45 H 1.07998 * 119.88053 * 180.31646 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 8 2.0187 -0.6980 -1.1576 5 6 2.2280 -2.0714 -0.7646 6 6 2.8323 -1.9525 0.6578 7 6 2.0539 -0.7481 1.2412 8 1 1.2251 -1.0930 1.8594 9 6 2.9883 0.1507 2.0535 10 7 3.4497 -0.5714 3.2417 11 16 4.7442 -0.0041 4.1047 12 8 5.7678 0.2713 3.1583 13 8 4.9170 -0.8930 5.1998 14 6 4.2723 1.5477 4.7931 15 6 3.6785 1.5928 6.0450 16 6 3.3055 2.7992 6.5922 17 6 3.5294 3.9896 5.8762 18 6 3.1508 5.2349 6.4286 19 1 3.6447 6.1404 6.1082 20 6 2.1322 5.2949 7.3864 21 7 1.3062 4.2901 7.5267 22 14 1.9520 6.8096 8.4647 23 1 3.0033 7.7970 8.1110 24 1 0.6125 7.4136 8.2498 25 1 2.0973 6.4220 9.8909 26 6 4.1282 3.9312 4.6041 27 6 4.4988 2.7144 4.0792 28 1 -0.3634 0.4970 0.8995 29 1 -0.3633 0.5305 -0.8801 30 1 -0.3634 -1.0274 -0.0194 31 1 3.1428 1.4280 -0.0195 32 1 1.6787 1.9606 -0.8802 33 1 1.7103 1.9492 0.8995 34 1 2.9295 -2.5612 -1.4400 35 1 1.2813 -2.6108 -0.7354 36 1 3.9003 -1.7391 0.6101 37 1 2.6431 -2.8558 1.2376 38 1 2.4527 1.0493 2.3596 39 1 3.8464 0.4298 1.4419 40 1 2.9969 -1.3819 3.5229 41 1 3.5080 0.6779 6.5929 42 1 2.8426 2.8320 7.5675 43 1 0.6005 4.3315 8.1908 44 1 4.3003 4.8384 4.0439 45 1 4.9632 2.6675 3.1053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649888131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:08 Heat of formation + Delta-G solvation = -119.172360 kcal Electronic energy + Delta-G solvation = -27924.563890 eV Core-core repulsion = 24032.946523 eV Total energy + Delta-G solvation = -3891.617367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29883 -37.59795 -36.52532 -35.54417 -35.13528 -34.06090 -33.04113 -31.51311 -30.27553 -29.49342 -28.06740 -26.48957 -25.84028 -24.00690 -21.65832 -21.50565 -21.17660 -19.74137 -18.81568 -17.64491 -17.18657 -16.63353 -16.43171 -15.89993 -15.66546 -15.40026 -14.98927 -14.51697 -14.40253 -14.12008 -13.56311 -13.35690 -13.26219 -13.22763 -12.51323 -12.37339 -12.35410 -12.22847 -12.19999 -11.82610 -11.79706 -11.68866 -11.48172 -11.40214 -11.33960 -11.29516 -11.20908 -11.12605 -10.92532 -10.74838 -10.57551 -10.41185 -9.79636 -9.74919 -9.64660 -9.53261 -9.02698 -7.98058 -7.72753 -7.16773 -4.82579 1.24730 2.22549 2.85858 2.88012 2.90905 2.93927 3.64138 3.64837 3.75846 4.20502 4.36325 4.43085 4.58359 4.65292 4.89404 4.99735 5.06708 5.15843 5.29081 5.32074 5.37565 5.40398 5.52649 5.60337 5.66411 5.73327 5.75653 5.82575 5.89411 6.00158 6.03866 6.07052 6.11549 6.23914 6.25780 6.65837 6.68598 6.86117 6.89567 7.02113 7.27824 7.32602 7.40606 7.61457 7.75190 7.94583 8.30003 8.49187 8.62696 9.74574 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.003288 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.473940 B = 8513.767208 C = 9679.952098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 C -0.156 4.156 4 O -0.368 6.368 5 C 0.046 3.954 6 C -0.152 4.152 7 C -0.120 4.120 8 H 0.091 0.909 9 C 0.128 3.872 10 N -1.126 6.126 11 S 2.694 3.306 12 O -0.986 6.986 13 O -0.985 6.985 14 C -0.787 4.787 15 C -0.015 4.015 16 C -0.183 4.183 17 C 0.139 3.861 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.766 5.766 22 Si 0.916 3.084 23 H -0.256 1.256 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.238 4.238 27 C -0.001 4.001 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.409 0.591 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.288 0.712 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -7.445 -9.871 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.065 3.935 3 C -0.213 4.213 4 O -0.287 6.287 5 C -0.031 4.031 6 C -0.190 4.190 7 C -0.140 4.140 8 H 0.110 0.890 9 C 0.002 3.998 10 N -0.883 5.883 11 S 2.792 3.208 12 O -0.976 6.976 13 O -0.976 6.976 14 C -0.883 4.883 15 C -0.035 4.035 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.150 4.150 21 N -0.389 5.389 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.195 1.195 25 H -0.192 1.192 26 C -0.258 4.258 27 C -0.021 4.021 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.241 0.759 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.402 -7.732 -9.958 13.058 hybrid contribution -1.064 0.711 1.014 1.633 sum -4.466 -7.021 -8.944 12.216 Atomic orbital electron populations 1.22252 0.94652 1.02240 1.02846 1.22063 0.93574 0.93376 0.84469 1.22099 1.02478 0.93716 1.03007 1.88911 1.86092 1.20509 1.33203 1.23512 0.99552 0.84480 0.95521 1.23249 1.01373 0.98241 0.96122 1.22797 0.98683 0.95813 0.96670 0.89021 1.21448 0.98266 0.94400 0.85652 1.55750 1.53715 1.38454 1.40344 1.01203 0.72746 0.74343 0.72482 1.93480 1.54658 1.86307 1.63137 1.93494 1.85248 1.65443 1.53434 1.29150 1.32879 1.16548 1.09717 1.20251 0.93139 0.97679 0.92431 1.21337 1.06236 0.91642 1.01110 1.17856 0.85974 0.93247 0.89348 1.19979 1.14426 0.94781 1.17046 0.89396 1.26132 0.94205 0.98360 0.96277 1.69817 1.10640 1.30936 1.27457 0.86111 0.79417 0.80857 0.79664 1.17963 1.19527 1.19236 1.21057 1.11443 0.95987 0.97326 1.20176 0.93213 0.92112 0.96572 0.91168 0.91803 0.92484 0.91107 0.91875 0.90261 0.89089 0.92427 0.89748 0.90167 0.90798 0.90038 0.75895 0.87936 0.85999 0.90049 0.88183 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.62 37.16 0.32 -1.23 16 2 C 0.11 1.15 1.19 -90.05 -0.11 1.05 16 3 C -0.16 -1.74 7.71 37.16 0.29 -1.46 16 4 O -0.37 -4.42 10.86 -35.23 -0.38 -4.81 16 5 C 0.05 0.43 7.66 38.21 0.29 0.73 16 6 C -0.15 -1.50 6.52 -24.72 -0.16 -1.66 16 7 C -0.12 -1.28 2.74 -89.09 -0.24 -1.53 16 8 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 9 C 0.13 1.69 4.34 -4.04 -0.02 1.67 16 10 N -1.13 -16.13 5.80 -10.61 -0.06 -16.19 16 11 S 2.69 50.66 5.73 -107.50 -0.62 50.04 16 12 O -0.99 -20.40 16.73 -57.17 -0.96 -21.36 16 13 O -0.99 -20.77 17.26 -57.17 -0.99 -21.75 16 14 C -0.79 -16.92 5.97 -39.29 -0.23 -17.16 16 15 C -0.01 -0.34 9.49 -39.66 -0.38 -0.71 16 16 C -0.18 -4.51 8.70 -38.87 -0.34 -4.85 16 17 C 0.14 3.47 5.57 -106.83 -0.60 2.87 16 18 C -0.43 -10.50 9.05 -37.74 -0.34 -10.84 16 19 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 20 C 0.07 1.64 5.15 -17.34 -0.09 1.55 16 21 N -0.77 -17.86 10.95 55.55 0.61 -17.25 16 22 Si 0.92 16.78 29.59 -169.99 -5.03 11.75 16 23 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 25 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 26 C -0.24 -5.47 9.80 -38.87 -0.38 -5.85 16 27 C 0.00 -0.01 9.49 -39.66 -0.38 -0.39 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.86 6.80 -51.93 -0.35 0.51 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.08 0.93 7.83 -51.92 -0.41 0.52 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.99 6.65 -51.93 -0.35 0.65 16 39 H 0.08 1.12 6.46 -51.93 -0.34 0.78 16 40 H 0.41 4.88 8.65 -34.47 -0.30 4.58 16 41 H 0.10 2.18 7.60 -52.49 -0.40 1.79 16 42 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 43 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 44 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.10 2.02 7.59 -52.49 -0.40 1.62 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -29.80 373.63 -10.70 -40.50 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.54 Total: 11.25 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: -2.36 Total: -37.82 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.55 Total: -33.44 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -2.33 Total: -47.92 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 50.66 SS G_CDS: -0.62 Total: 50.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.80 -10.70 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649888131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.671 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds