Wall clock time and date at job start Sat Apr 11 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.99007 * 2 1 4 4 O 1.43740 * 109.87806 * 238.91108 * 2 1 3 5 5 C 1.44378 * 106.97602 * 267.08973 * 4 2 1 6 6 C 1.54995 * 103.49332 * 319.94191 * 5 4 2 7 7 C 1.54103 * 109.87777 * 121.07949 * 2 1 3 8 8 H 1.09004 * 110.60084 * 358.66618 * 7 2 1 9 9 C 1.52995 * 110.49160 * 236.07210 * 7 2 1 10 10 N 1.46498 * 109.47416 * 178.78313 * 9 7 2 11 11 S 1.65595 * 120.00113 * 165.00175 * 10 9 7 12 12 O 1.42103 * 106.40162 * 311.45451 * 11 10 9 13 13 O 1.42104 * 106.40191 * 178.53952 * 11 10 9 14 14 C 1.76197 * 107.22033 * 64.99854 * 11 10 9 15 15 C 1.38629 * 119.75060 * 90.00242 * 14 11 10 16 16 C 1.37624 * 120.24650 * 180.02562 * 15 14 11 17 17 C 1.40709 * 119.74609 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24474 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00017 * 155.57121 * 18 17 16 20 20 C 1.39945 * 119.99955 * 335.30142 * 18 17 16 21 21 N 1.30820 * 120.00086 * 342.55190 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 162.55208 * 20 18 17 23 23 H 1.48497 * 109.47547 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46828 * 119.99994 * 22 20 18 25 25 H 1.48502 * 109.46817 * 239.99969 * 22 20 18 26 26 C 1.40718 * 119.51124 * 0.26996 * 17 16 15 27 27 C 1.37612 * 119.74589 * 359.43093 * 26 17 16 28 28 H 1.09005 * 109.47328 * 298.91960 * 1 2 3 29 29 H 1.08994 * 109.47191 * 58.91646 * 1 2 3 30 30 H 1.08997 * 109.47643 * 178.91615 * 1 2 3 31 31 H 1.09002 * 109.47108 * 181.08510 * 3 2 1 32 32 H 1.09002 * 109.47098 * 301.07856 * 3 2 1 33 33 H 1.08999 * 109.47525 * 61.08588 * 3 2 1 34 34 H 1.09005 * 110.61404 * 201.44053 * 5 4 2 35 35 H 1.08994 * 110.61893 * 78.44108 * 5 4 2 36 36 H 1.09009 * 110.90816 * 278.82725 * 6 5 4 37 37 H 1.08997 * 110.90832 * 155.22352 * 6 5 4 38 38 H 1.08999 * 109.47402 * 58.77530 * 9 7 2 39 39 H 1.09006 * 109.46908 * 298.78164 * 9 7 2 40 40 H 0.97000 * 119.99528 * 344.99164 * 10 9 7 41 41 H 1.07998 * 119.88148 * 0.02562 * 15 14 11 42 42 H 1.08005 * 120.12321 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00216 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.12485 * 179.70167 * 26 17 16 45 45 H 1.07998 * 119.88053 * 180.31646 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 8 2.0187 -0.6980 -1.1576 5 6 2.2280 -2.0714 -0.7646 6 6 2.8323 -1.9525 0.6578 7 6 2.0539 -0.7481 1.2412 8 1 1.2251 -1.0930 1.8594 9 6 2.9883 0.1507 2.0535 10 7 3.4497 -0.5714 3.2417 11 16 4.7442 -0.0041 4.1047 12 8 5.7678 0.2713 3.1583 13 8 4.9170 -0.8930 5.1998 14 6 4.2723 1.5477 4.7931 15 6 3.6785 1.5928 6.0450 16 6 3.3055 2.7992 6.5922 17 6 3.5294 3.9896 5.8762 18 6 3.1508 5.2349 6.4286 19 1 3.6447 6.1404 6.1082 20 6 2.1322 5.2949 7.3864 21 7 1.3062 4.2901 7.5267 22 14 1.9520 6.8096 8.4647 23 1 3.0033 7.7970 8.1110 24 1 0.6125 7.4136 8.2498 25 1 2.0973 6.4220 9.8909 26 6 4.1282 3.9312 4.6041 27 6 4.4988 2.7144 4.0792 28 1 -0.3634 0.4970 0.8995 29 1 -0.3633 0.5305 -0.8801 30 1 -0.3634 -1.0274 -0.0194 31 1 3.1428 1.4280 -0.0195 32 1 1.6787 1.9606 -0.8802 33 1 1.7103 1.9492 0.8995 34 1 2.9295 -2.5612 -1.4400 35 1 1.2813 -2.6108 -0.7354 36 1 3.9003 -1.7391 0.6101 37 1 2.6431 -2.8558 1.2376 38 1 2.4527 1.0493 2.3596 39 1 3.8464 0.4298 1.4419 40 1 2.9969 -1.3819 3.5229 41 1 3.5080 0.6779 6.5929 42 1 2.8426 2.8320 7.5675 43 1 0.6005 4.3315 8.1908 44 1 4.3003 4.8384 4.0439 45 1 4.9632 2.6675 3.1053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649888131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:06 Heat of formation + Delta-G solvation = -138.420265 kcal Electronic energy + Delta-G solvation = -27925.398542 eV Core-core repulsion = 24032.946523 eV Total energy + Delta-G solvation = -3892.452019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13804 -39.37476 -38.14550 -36.79271 -36.62681 -35.79457 -33.92268 -32.42011 -32.05180 -31.28644 -28.92346 -27.61217 -27.38046 -24.92984 -23.28071 -22.96395 -22.44444 -20.76037 -20.17918 -19.41680 -18.66704 -18.12439 -17.51116 -17.14208 -16.88163 -16.64033 -16.03690 -15.81948 -15.70941 -15.40218 -15.14082 -14.93009 -14.44225 -14.10516 -14.02026 -13.96119 -13.58888 -13.36627 -13.27824 -13.17224 -13.11632 -12.99922 -12.91543 -12.87660 -12.80025 -12.60081 -12.51882 -12.33823 -11.98022 -11.92667 -11.58547 -11.55374 -11.47105 -11.29927 -11.22602 -10.55455 -10.31768 -9.77718 -9.54205 -8.86849 -6.64354 -0.29296 0.48701 1.06559 1.36321 1.42011 1.52861 2.11805 2.25074 2.52852 2.91611 2.95189 3.45537 3.53295 3.61207 3.69332 3.83694 4.11215 4.21634 4.30590 4.31065 4.32533 4.37105 4.41979 4.65328 4.68303 4.71689 4.81800 4.85304 4.88105 4.94685 4.97194 5.00053 5.03299 5.11159 5.15017 5.24518 5.25303 5.32357 5.38274 5.53260 5.60276 5.77146 5.93984 6.07178 6.16247 6.20485 6.50104 6.69190 6.81700 8.08182 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.003288 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.473940 B = 8513.767208 C = 9679.952098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 C -0.160 4.160 4 O -0.389 6.389 5 C 0.043 3.957 6 C -0.153 4.153 7 C -0.116 4.116 8 H 0.108 0.892 9 C 0.123 3.877 10 N -1.109 6.109 11 S 2.726 3.274 12 O -1.001 7.001 13 O -1.005 7.005 14 C -0.796 4.796 15 C -0.020 4.020 16 C -0.207 4.207 17 C 0.112 3.888 18 C -0.466 4.466 19 H 0.090 0.910 20 C 0.036 3.964 21 N -0.795 5.795 22 Si 0.989 3.011 23 H -0.255 1.255 24 H -0.261 1.261 25 H -0.263 1.263 26 C -0.254 4.254 27 C -0.001 4.001 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.423 0.577 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.298 0.702 44 H 0.111 0.889 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 -8.175 -10.402 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 C -0.217 4.217 4 O -0.309 6.309 5 C -0.033 4.033 6 C -0.190 4.190 7 C -0.136 4.136 8 H 0.126 0.874 9 C -0.003 4.003 10 N -0.870 5.870 11 S 2.821 3.179 12 O -0.991 6.991 13 O -0.996 6.996 14 C -0.889 4.889 15 C -0.040 4.040 16 C -0.228 4.228 17 C 0.109 3.891 18 C -0.493 4.493 19 H 0.108 0.892 20 C -0.184 4.184 21 N -0.418 5.418 22 Si 0.809 3.191 23 H -0.178 1.178 24 H -0.185 1.185 25 H -0.188 1.188 26 C -0.275 4.275 27 C -0.021 4.021 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.259 0.741 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.221 -8.455 -10.479 14.111 hybrid contribution -0.795 0.817 1.065 1.560 sum -5.016 -7.638 -9.414 13.120 Atomic orbital electron populations 1.22227 0.93495 1.02994 1.03002 1.22112 0.94417 0.92893 0.84290 1.22127 1.01932 0.94463 1.03154 1.88890 1.86333 1.21881 1.33797 1.23685 1.00686 0.83550 0.95354 1.23277 1.00403 0.98579 0.96785 1.22790 0.98652 0.95672 0.96454 0.87425 1.21599 0.98626 0.94877 0.85158 1.55283 1.52959 1.38740 1.39975 1.00249 0.72846 0.72909 0.71859 1.93461 1.55942 1.86352 1.63323 1.93464 1.85900 1.65426 1.54779 1.29632 1.31444 1.18412 1.09378 1.20447 0.92914 0.97564 0.93122 1.21348 1.07755 0.92554 1.01097 1.18191 0.86876 0.93790 0.90272 1.20245 1.15594 0.94727 1.18729 0.89152 1.26966 0.93226 1.01357 0.96827 1.69841 1.11133 1.32701 1.28110 0.85034 0.79591 0.76917 0.77573 1.17834 1.18505 1.18754 1.21279 1.11926 0.97158 0.97118 1.20447 0.92582 0.91734 0.97343 0.90857 0.91853 0.91414 0.92008 0.91553 0.90330 0.88048 0.90748 0.91116 0.88137 0.91158 0.90643 0.74062 0.86799 0.87212 0.89080 0.87071 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.62 71.98 0.62 -2.11 16 2 C 0.10 2.08 1.19 -10.42 -0.01 2.07 16 3 C -0.16 -3.46 7.71 71.98 0.55 -2.90 16 4 O -0.39 -8.70 10.86 -148.98 -1.62 -10.32 16 5 C 0.04 0.71 7.66 72.66 0.56 1.27 16 6 C -0.15 -2.64 6.52 31.90 0.21 -2.43 16 7 C -0.12 -2.23 2.74 -9.80 -0.03 -2.26 16 8 H 0.11 1.76 7.70 -2.39 -0.02 1.74 16 9 C 0.12 3.06 4.34 86.38 0.37 3.43 16 10 N -1.11 -29.73 5.80 -187.49 -1.09 -30.81 16 11 S 2.73 99.24 5.73 -56.49 -0.32 98.91 16 12 O -1.00 -40.13 16.73 -128.00 -2.14 -42.27 16 13 O -1.01 -41.06 17.26 -128.00 -2.21 -43.27 16 14 C -0.80 -33.99 5.97 22.46 0.13 -33.86 16 15 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 16 C -0.21 -10.52 8.70 22.73 0.20 -10.32 16 17 C 0.11 5.73 5.57 -21.29 -0.12 5.61 16 18 C -0.47 -23.02 9.05 23.46 0.21 -22.81 16 19 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 20 C 0.04 1.63 5.15 85.26 0.44 2.07 16 21 N -0.79 -37.62 10.95 21.83 0.24 -37.38 16 22 Si 0.99 34.18 29.59 68.60 2.03 36.21 16 23 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 24 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 25 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 26 C -0.25 -11.90 9.80 22.73 0.22 -11.68 16 27 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 31 H 0.06 1.42 6.75 -2.39 -0.02 1.40 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.68 6.80 -2.39 -0.02 1.66 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 36 H 0.07 1.43 7.83 -2.38 -0.02 1.41 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.82 6.65 -2.39 -0.02 1.81 16 39 H 0.08 2.00 6.46 -2.38 -0.02 1.98 16 40 H 0.42 9.05 8.65 -96.75 -0.84 8.22 16 41 H 0.11 4.87 7.60 -2.91 -0.02 4.85 16 42 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 43 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.13 4.76 7.59 -2.91 -0.02 4.74 16 Total: -1.00 -63.78 373.63 -1.16 -64.94 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.17 Total: 38.50 kcal Atomic # 6 Polarization: -78.28 SS G_CDS: 3.78 Total: -74.50 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.85 Total: -68.19 kcal Atomic # 8 Polarization: -89.90 SS G_CDS: -5.97 Total: -95.87 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 16 Polarization: 99.24 SS G_CDS: -0.32 Total: 98.91 kcal Total: -63.78 -1.16 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649888131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.481 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds