Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.48451 * 2 1 4 4 N 1.46501 * 109.47093 * 59.97581 * 3 2 1 5 5 S 1.65596 * 119.99868 * 165.00509 * 4 3 2 6 6 O 1.42101 * 106.40401 * 178.53757 * 5 4 3 7 7 O 1.42098 * 106.40188 * 311.45786 * 5 4 3 8 8 C 1.76202 * 107.22336 * 64.99962 * 5 4 3 9 9 C 1.38635 * 119.74855 * 269.72773 * 8 5 4 10 10 C 1.37617 * 120.25104 * 179.75839 * 9 8 5 11 11 C 1.40715 * 119.74061 * 0.53184 * 10 9 8 12 12 C 1.41397 * 120.24708 * 179.74276 * 11 10 9 13 13 H 1.08007 * 119.99488 * 24.36537 * 12 11 10 14 14 C 1.39939 * 120.00262 * 204.36460 * 12 11 10 15 15 N 1.30821 * 120.00177 * 17.86137 * 14 12 11 16 16 Si 1.86804 * 119.99881 * 197.85270 * 14 12 11 17 17 H 1.48504 * 109.46914 * 90.00633 * 16 14 12 18 18 H 1.48505 * 109.47079 * 210.00072 * 16 14 12 19 19 H 1.48494 * 109.47624 * 330.00524 * 16 14 12 20 20 C 1.40716 * 119.51223 * 359.72077 * 11 10 9 21 21 C 1.37612 * 119.74701 * 0.02562 * 20 11 10 22 22 C 1.53096 * 109.48183 * 239.97221 * 2 1 3 23 23 C 1.53175 * 109.16422 * 297.61956 * 22 2 1 24 24 C 1.53179 * 109.03696 * 303.01674 * 23 22 2 25 25 C 1.53095 * 109.16459 * 56.97911 * 24 23 22 26 26 O 1.42903 * 109.41235 * 302.39422 * 25 24 23 27 27 H 1.08995 * 109.47291 * 60.00129 * 1 2 3 28 28 H 1.08999 * 109.47476 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47230 * 299.99982 * 1 2 3 30 30 H 1.08995 * 109.47598 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47140 * 299.97683 * 3 2 1 32 32 H 0.97001 * 120.00096 * 345.00208 * 4 3 2 33 33 H 1.08007 * 119.87745 * 359.97438 * 9 8 5 34 34 H 1.08000 * 120.13413 * 180.27961 * 10 9 8 35 35 H 0.97002 * 119.99744 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.12891 * 180.02562 * 20 11 10 37 37 H 1.08000 * 119.88317 * 179.97438 * 21 20 11 38 38 H 1.08998 * 109.51758 * 57.52086 * 22 2 1 39 39 H 1.08992 * 109.52446 * 177.70781 * 22 2 1 40 40 H 1.08999 * 109.54538 * 62.87930 * 23 22 2 41 41 H 1.09005 * 109.54396 * 183.06133 * 23 22 2 42 42 H 1.09001 * 109.52501 * 176.88762 * 24 23 22 43 43 H 1.09005 * 109.51625 * 297.01364 * 24 23 22 44 44 H 1.09001 * 109.47902 * 62.37413 * 25 24 23 45 45 H 1.08996 * 109.47904 * 182.40044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 7 1.5516 2.1332 1.1959 5 16 2.2318 3.5707 1.6576 6 8 1.5254 3.9954 2.8152 7 8 3.6390 3.3747 1.6341 8 6 1.8722 4.7471 0.3960 9 6 2.7525 4.9115 -0.6623 10 6 2.4794 5.8237 -1.6559 11 6 1.3071 6.5991 -1.5887 12 6 1.0187 7.5434 -2.6009 13 1 1.4386 7.4215 -3.5885 14 6 0.1893 8.6357 -2.3230 15 7 -0.0360 8.9872 -1.0832 16 14 -0.5958 9.5921 -3.7224 17 1 -1.9137 8.9928 -4.0532 18 1 -0.7846 11.0064 -3.3108 19 1 0.2863 9.5373 -4.9157 20 6 0.4236 6.4274 -0.5071 21 6 0.7143 5.5055 0.4724 22 6 2.0405 -0.7223 -1.2496 23 6 1.5759 -2.1814 -1.2122 24 6 2.0768 -2.8322 0.0808 25 6 1.5649 -2.0285 1.2791 26 8 2.0068 -0.6742 1.1663 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1302 1.4422 0.0005 31 1 1.6774 1.9562 -0.8902 32 1 0.8296 1.7487 1.7172 33 1 3.6542 4.3189 -0.7092 34 1 3.1643 5.9470 -2.4818 35 1 -0.6106 9.7446 -0.8907 36 1 -0.4793 7.0169 -0.4458 37 1 0.0379 5.3723 1.3038 38 1 1.6419 -0.2358 -2.1398 39 1 3.1297 -0.6872 -1.2711 40 1 0.4869 -2.2181 -1.2406 41 1 1.9814 -2.7154 -2.0716 42 1 1.7041 -3.8547 0.1421 43 1 3.1668 -2.8408 0.0857 44 1 0.4753 -2.0552 1.2959 45 1 1.9534 -2.4623 2.2004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650033239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -122.390119 kcal Electronic energy + Delta-G solvation = -27826.656041 eV Core-core repulsion = 23934.899142 eV Total energy + Delta-G solvation = -3891.756900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16814 -37.56061 -36.42376 -35.31934 -35.03331 -34.02659 -33.85121 -31.69255 -30.23981 -29.45570 -28.29061 -26.13838 -25.79543 -24.16132 -21.91474 -21.47875 -21.12042 -19.37622 -18.81356 -17.61902 -17.25123 -16.67849 -16.42549 -16.01716 -15.52497 -15.26851 -15.00581 -14.76007 -14.35925 -14.10322 -13.59224 -13.34426 -13.23670 -13.16668 -12.90887 -12.81622 -12.41087 -12.30991 -12.17816 -11.89266 -11.71727 -11.46496 -11.42697 -11.36465 -11.29172 -11.26570 -11.18793 -11.18743 -10.87276 -10.81273 -10.39990 -10.18039 -9.75051 -9.62472 -9.51776 -9.48037 -8.98104 -7.94940 -7.69224 -7.12961 -4.79249 1.32561 2.27190 2.88000 2.90932 2.92761 2.93954 3.57398 3.66412 3.82377 4.25905 4.45850 4.58698 4.60253 4.61936 4.72996 4.84370 4.96414 5.19304 5.25786 5.30057 5.38125 5.40623 5.50081 5.57012 5.62572 5.69922 5.74849 5.76987 5.84224 5.92143 5.99426 6.08614 6.10799 6.16046 6.27459 6.69245 6.72370 6.93726 7.06006 7.16678 7.34383 7.39079 7.45162 7.65488 7.78054 7.98007 8.33199 8.52339 8.66252 9.78591 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.002976 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.366714 B = 9404.933361 C =10288.991893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 C 0.138 3.862 4 N -1.119 6.119 5 S 2.695 3.305 6 O -0.985 6.985 7 O -0.985 6.985 8 C -0.788 4.788 9 C 0.000 4.000 10 C -0.239 4.239 11 C 0.140 3.860 12 C -0.437 4.437 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.917 3.083 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.185 4.185 21 C -0.014 4.014 22 C -0.145 4.145 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.055 3.945 26 O -0.364 6.364 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.289 0.711 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -17.281 -1.824 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C 0.011 3.989 4 N -0.876 5.876 5 S 2.794 3.206 6 O -0.976 6.976 7 O -0.975 6.975 8 C -0.883 4.883 9 C -0.021 4.021 10 C -0.259 4.259 11 C 0.136 3.864 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.387 5.387 16 Si 0.741 3.259 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.205 4.205 21 C -0.034 4.034 22 C -0.183 4.183 23 C -0.159 4.159 24 C -0.194 4.194 25 C -0.021 4.021 26 O -0.283 6.283 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.105 -16.818 -0.826 16.874 hybrid contribution -1.152 0.460 -1.185 1.716 sum -2.258 -16.358 -2.011 16.635 Atomic orbital electron populations 1.22453 0.95365 1.02451 1.03579 1.21653 0.93511 0.91880 0.85958 1.21192 1.00029 0.89518 0.88140 1.55598 1.52870 1.40550 1.38604 1.01161 0.73028 0.72454 0.73984 1.93492 1.74710 1.81438 1.47935 1.93476 1.30653 1.85859 1.87521 1.29197 1.10483 1.26449 1.22204 1.20180 0.94907 0.95150 0.91816 1.21019 0.99229 1.04460 1.01217 1.17850 0.88794 0.88697 0.91061 1.19936 1.23214 1.04843 0.98425 0.89470 1.26139 0.94475 0.97515 0.96907 1.69828 1.26426 1.22173 1.20288 0.86146 0.80223 0.78445 0.81121 1.18836 1.19877 1.18212 1.21341 1.01249 1.00955 0.96943 1.20255 0.93292 0.93509 0.96340 1.22153 1.02271 0.95866 0.97998 1.21603 1.01055 0.95557 0.97706 1.22192 1.02077 0.99425 0.95726 1.22584 0.98735 0.82656 0.98160 1.88067 1.73389 1.24035 1.42815 0.90853 0.91852 0.91453 0.89868 0.90067 0.75558 0.87798 0.88223 0.89954 0.86038 0.87903 0.90310 0.90556 0.91578 0.91502 0.91199 0.91032 0.92960 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 7.76 37.15 0.29 -1.49 16 2 C 0.11 1.24 0.80 -90.58 -0.07 1.17 16 3 C 0.14 1.88 5.36 -4.04 -0.02 1.85 16 4 N -1.12 -17.22 5.72 -10.61 -0.06 -17.28 16 5 S 2.70 53.21 5.73 -107.50 -0.62 52.59 16 6 O -0.99 -21.79 17.26 -57.17 -0.99 -22.78 16 7 O -0.98 -21.54 16.72 -57.17 -0.96 -22.49 16 8 C -0.79 -17.31 5.97 -39.29 -0.23 -17.54 16 9 C 0.00 -0.01 9.49 -39.66 -0.38 -0.39 16 10 C -0.24 -5.57 9.80 -38.87 -0.38 -5.95 16 11 C 0.14 3.51 5.58 -106.82 -0.60 2.92 16 12 C -0.44 -10.65 9.05 -37.74 -0.34 -10.99 16 13 H 0.09 2.00 7.91 -52.48 -0.41 1.59 16 14 C 0.07 1.66 5.14 -17.35 -0.09 1.57 16 15 N -0.76 -18.40 10.95 55.55 0.61 -17.79 16 16 Si 0.92 16.96 29.60 -169.99 -5.03 11.93 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 C -0.18 -4.61 8.70 -38.87 -0.34 -4.95 16 21 C -0.01 -0.32 9.49 -39.66 -0.38 -0.69 16 22 C -0.14 -1.35 4.92 -26.59 -0.13 -1.48 16 23 C -0.12 -0.94 5.72 -26.55 -0.15 -1.09 16 24 C -0.16 -1.21 6.14 -26.59 -0.16 -1.37 16 25 C 0.06 0.50 6.52 37.21 0.24 0.75 16 26 O -0.36 -4.51 10.10 -35.23 -0.36 -4.86 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 29 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 30 H 0.08 1.19 7.75 -51.93 -0.40 0.78 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 5.61 7.08 -34.47 -0.24 5.36 16 33 H 0.10 2.06 7.59 -52.48 -0.40 1.66 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 36 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 37 H 0.10 2.23 7.60 -52.49 -0.40 1.83 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.48 6.62 -51.93 -0.34 0.13 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.43 6.34 -51.93 -0.33 0.10 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -30.73 367.95 -10.99 -41.72 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.40 Total: 11.12 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: -2.74 Total: -37.69 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.55 Total: -35.07 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -2.30 Total: -50.13 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -0.62 Total: 52.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.73 -10.99 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650033239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.674 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds