Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.48451 * 2 1 4 4 N 1.46501 * 109.47093 * 59.97581 * 3 2 1 5 5 S 1.65596 * 119.99868 * 165.00509 * 4 3 2 6 6 O 1.42101 * 106.40401 * 178.53757 * 5 4 3 7 7 O 1.42098 * 106.40188 * 311.45786 * 5 4 3 8 8 C 1.76202 * 107.22336 * 64.99962 * 5 4 3 9 9 C 1.38635 * 119.74855 * 269.72773 * 8 5 4 10 10 C 1.37617 * 120.25104 * 179.75839 * 9 8 5 11 11 C 1.40715 * 119.74061 * 0.53184 * 10 9 8 12 12 C 1.41397 * 120.24708 * 179.74276 * 11 10 9 13 13 H 1.08007 * 119.99488 * 24.36537 * 12 11 10 14 14 C 1.39939 * 120.00262 * 204.36460 * 12 11 10 15 15 N 1.30821 * 120.00177 * 17.86137 * 14 12 11 16 16 Si 1.86804 * 119.99881 * 197.85270 * 14 12 11 17 17 H 1.48504 * 109.46914 * 90.00633 * 16 14 12 18 18 H 1.48505 * 109.47079 * 210.00072 * 16 14 12 19 19 H 1.48494 * 109.47624 * 330.00524 * 16 14 12 20 20 C 1.40716 * 119.51223 * 359.72077 * 11 10 9 21 21 C 1.37612 * 119.74701 * 0.02562 * 20 11 10 22 22 C 1.53096 * 109.48183 * 239.97221 * 2 1 3 23 23 C 1.53175 * 109.16422 * 297.61956 * 22 2 1 24 24 C 1.53179 * 109.03696 * 303.01674 * 23 22 2 25 25 C 1.53095 * 109.16459 * 56.97911 * 24 23 22 26 26 O 1.42903 * 109.41235 * 302.39422 * 25 24 23 27 27 H 1.08995 * 109.47291 * 60.00129 * 1 2 3 28 28 H 1.08999 * 109.47476 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47230 * 299.99982 * 1 2 3 30 30 H 1.08995 * 109.47598 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47140 * 299.97683 * 3 2 1 32 32 H 0.97001 * 120.00096 * 345.00208 * 4 3 2 33 33 H 1.08007 * 119.87745 * 359.97438 * 9 8 5 34 34 H 1.08000 * 120.13413 * 180.27961 * 10 9 8 35 35 H 0.97002 * 119.99744 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.12891 * 180.02562 * 20 11 10 37 37 H 1.08000 * 119.88317 * 179.97438 * 21 20 11 38 38 H 1.08998 * 109.51758 * 57.52086 * 22 2 1 39 39 H 1.08992 * 109.52446 * 177.70781 * 22 2 1 40 40 H 1.08999 * 109.54538 * 62.87930 * 23 22 2 41 41 H 1.09005 * 109.54396 * 183.06133 * 23 22 2 42 42 H 1.09001 * 109.52501 * 176.88762 * 24 23 22 43 43 H 1.09005 * 109.51625 * 297.01364 * 24 23 22 44 44 H 1.09001 * 109.47902 * 62.37413 * 25 24 23 45 45 H 1.08996 * 109.47904 * 182.40044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 7 1.5516 2.1332 1.1959 5 16 2.2318 3.5707 1.6576 6 8 1.5254 3.9954 2.8152 7 8 3.6390 3.3747 1.6341 8 6 1.8722 4.7471 0.3960 9 6 2.7525 4.9115 -0.6623 10 6 2.4794 5.8237 -1.6559 11 6 1.3071 6.5991 -1.5887 12 6 1.0187 7.5434 -2.6009 13 1 1.4386 7.4215 -3.5885 14 6 0.1893 8.6357 -2.3230 15 7 -0.0360 8.9872 -1.0832 16 14 -0.5958 9.5921 -3.7224 17 1 -1.9137 8.9928 -4.0532 18 1 -0.7846 11.0064 -3.3108 19 1 0.2863 9.5373 -4.9157 20 6 0.4236 6.4274 -0.5071 21 6 0.7143 5.5055 0.4724 22 6 2.0405 -0.7223 -1.2496 23 6 1.5759 -2.1814 -1.2122 24 6 2.0768 -2.8322 0.0808 25 6 1.5649 -2.0285 1.2791 26 8 2.0068 -0.6742 1.1663 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1302 1.4422 0.0005 31 1 1.6774 1.9562 -0.8902 32 1 0.8296 1.7487 1.7172 33 1 3.6542 4.3189 -0.7092 34 1 3.1643 5.9470 -2.4818 35 1 -0.6106 9.7446 -0.8907 36 1 -0.4793 7.0169 -0.4458 37 1 0.0379 5.3723 1.3038 38 1 1.6419 -0.2358 -2.1398 39 1 3.1297 -0.6872 -1.2711 40 1 0.4869 -2.2181 -1.2406 41 1 1.9814 -2.7154 -2.0716 42 1 1.7041 -3.8547 0.1421 43 1 3.1668 -2.8408 0.0857 44 1 0.4753 -2.0552 1.2959 45 1 1.9534 -2.4623 2.2004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650033239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -142.299692 kcal Electronic energy + Delta-G solvation = -27827.519385 eV Core-core repulsion = 23934.899142 eV Total energy + Delta-G solvation = -3892.620243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96871 -39.37121 -38.13158 -36.76913 -36.40941 -35.79396 -34.58438 -32.62494 -32.05502 -31.28225 -29.02681 -27.61210 -27.12466 -24.86867 -23.27657 -23.00144 -22.67047 -20.41926 -20.02901 -19.41479 -18.73780 -18.24753 -17.53381 -17.18690 -16.98501 -16.46530 -15.98310 -15.76901 -15.69694 -15.41501 -15.13839 -14.94123 -14.50014 -14.13252 -14.01561 -13.97260 -13.84048 -13.52806 -13.50586 -13.14225 -13.07288 -13.01966 -12.94403 -12.89625 -12.87263 -12.56319 -12.48388 -12.09737 -11.98232 -11.86377 -11.55351 -11.52649 -11.35335 -11.20142 -10.94564 -10.37916 -10.24470 -9.78160 -9.53899 -8.86420 -6.64132 -0.28628 0.49392 1.06984 1.36512 1.44154 1.52063 2.11861 2.26890 2.55722 2.78962 2.98602 3.53342 3.55155 3.74617 3.87286 3.93209 4.00515 4.14319 4.24574 4.32457 4.34916 4.49640 4.54929 4.62170 4.68079 4.70065 4.85462 4.88690 4.91426 4.95752 5.00394 5.06360 5.10996 5.12954 5.17753 5.24519 5.25560 5.29643 5.51539 5.53775 5.60748 5.78076 5.94164 6.16388 6.18505 6.40324 6.50307 6.69342 6.82276 8.08743 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.002976 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.366714 B = 9404.933361 C =10288.991893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.112 3.888 3 C 0.127 3.873 4 N -1.104 6.104 5 S 2.725 3.275 6 O -1.008 7.008 7 O -1.003 7.003 8 C -0.794 4.794 9 C -0.001 4.001 10 C -0.254 4.254 11 C 0.112 3.888 12 C -0.465 4.465 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.800 5.800 16 Si 0.993 3.007 17 H -0.258 1.258 18 H -0.267 1.267 19 H -0.252 1.252 20 C -0.208 4.208 21 C -0.020 4.020 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.153 4.153 25 C 0.047 3.953 26 O -0.392 6.392 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.421 0.579 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.298 0.702 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -18.749 -2.927 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C 0.001 3.999 4 N -0.865 5.865 5 S 2.821 3.179 6 O -0.999 6.999 7 O -0.994 6.994 8 C -0.887 4.887 9 C -0.021 4.021 10 C -0.274 4.274 11 C 0.109 3.891 12 C -0.492 4.492 13 H 0.112 0.888 14 C -0.186 4.186 15 N -0.423 5.423 16 Si 0.812 3.188 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.176 1.176 20 C -0.228 4.228 21 C -0.040 4.040 22 C -0.183 4.183 23 C -0.157 4.157 24 C -0.191 4.191 25 C -0.029 4.029 26 O -0.312 6.312 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.698 -18.282 -1.932 18.463 hybrid contribution -0.917 0.797 -0.748 1.427 sum -2.615 -17.485 -2.680 17.881 Atomic orbital electron populations 1.22463 0.94301 1.03628 1.03447 1.21631 0.94249 0.90308 0.86662 1.21462 0.99759 0.91392 0.87300 1.55163 1.53027 1.38826 1.39477 1.00243 0.72364 0.72543 0.72781 1.93453 1.75063 1.82387 1.48998 1.93450 1.32094 1.86247 1.87562 1.29574 1.09697 1.26962 1.22479 1.20454 0.95519 0.94808 0.91326 1.21251 0.99150 1.04758 1.02235 1.18200 0.89579 0.89728 0.91622 1.20242 1.24677 1.05603 0.98641 0.88828 1.27053 0.94191 0.97999 0.99389 1.69871 1.27021 1.23012 1.22353 0.85023 0.79159 0.76958 0.77621 1.18236 1.19151 1.17557 1.21355 1.01405 1.01939 0.98113 1.20434 0.94039 0.93260 0.96234 1.22166 1.01877 0.97021 0.97278 1.21617 1.01634 0.94303 0.98138 1.22174 1.01578 1.00257 0.95101 1.22802 0.99504 0.81378 0.99184 1.88017 1.74048 1.25750 1.43336 0.90450 0.90065 0.92113 0.90668 0.89327 0.74259 0.85622 0.86894 0.89093 0.87211 0.86930 0.89460 0.91292 0.90672 0.90338 0.89219 0.91889 0.91881 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 7.76 71.98 0.56 -2.64 16 2 C 0.11 2.34 0.80 -10.76 -0.01 2.33 16 3 C 0.13 3.33 5.36 86.38 0.46 3.79 16 4 N -1.10 -33.03 5.72 -187.50 -1.07 -34.10 16 5 S 2.72 106.33 5.73 -56.49 -0.32 106.00 16 6 O -1.01 -44.28 17.26 -128.00 -2.21 -46.49 16 7 O -1.00 -43.25 16.72 -128.00 -2.14 -45.39 16 8 C -0.79 -34.90 5.97 22.46 0.13 -34.76 16 9 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 10 C -0.25 -11.94 9.80 22.73 0.22 -11.72 16 11 C 0.11 5.77 5.58 -21.29 -0.12 5.65 16 12 C -0.46 -23.00 9.05 23.46 0.21 -22.79 16 13 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 14 C 0.03 1.52 5.14 85.26 0.44 1.96 16 15 N -0.80 -39.16 10.95 21.82 0.24 -38.92 16 16 Si 0.99 34.34 29.60 68.60 2.03 36.37 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 18 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 19 H -0.25 -8.39 7.11 99.48 0.71 -7.69 16 20 C -0.21 -10.68 8.70 22.73 0.20 -10.49 16 21 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 22 C -0.15 -2.44 4.92 30.68 0.15 -2.29 16 23 C -0.12 -1.53 5.72 30.71 0.18 -1.35 16 24 C -0.15 -2.00 6.14 30.69 0.19 -1.82 16 25 C 0.05 0.77 6.52 72.01 0.47 1.24 16 26 O -0.39 -9.16 10.10 -148.98 -1.50 -10.66 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.13 4.98 -2.39 -0.01 1.12 16 29 H 0.06 1.14 6.60 -2.39 -0.02 1.13 16 30 H 0.07 2.10 7.75 -2.39 -0.02 2.08 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.42 11.06 7.08 -96.75 -0.69 10.38 16 33 H 0.13 4.87 7.59 -2.91 -0.02 4.85 16 34 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 36 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 37 H 0.11 4.97 7.60 -2.91 -0.02 4.94 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 0.84 6.62 -2.39 -0.02 0.82 16 41 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.06 0.87 6.34 -2.39 -0.02 0.85 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.02 367.95 -1.15 -67.18 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.33 Total: 39.45 kcal Atomic # 6 Polarization: -76.95 SS G_CDS: 3.51 Total: -73.44 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -0.83 Total: -73.02 kcal Atomic # 8 Polarization: -96.69 SS G_CDS: -5.85 Total: -102.54 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: 106.33 SS G_CDS: -0.32 Total: 106.00 kcal Total: -66.02 -1.15 -67.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650033239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.124 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds