Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.46777 * 2 1 4 4 C 1.38286 * 120.00535 * 90.00408 * 3 2 1 5 5 C 1.37971 * 119.95480 * 179.97438 * 4 3 2 6 6 C 1.39149 * 120.21804 * 0.02562 * 5 4 3 7 7 C 1.38312 * 119.70660 * 0.09203 * 6 5 4 8 8 C 1.38099 * 120.00818 * 270.02080 * 3 2 1 9 9 C 1.50771 * 121.44987 * 179.72065 * 7 6 5 10 10 H 1.09002 * 109.43740 * 257.72686 * 9 7 6 11 11 N 1.46499 * 109.43302 * 137.81128 * 9 7 6 12 12 S 1.65600 * 119.99834 * 144.91707 * 11 9 7 13 13 O 1.42099 * 104.27906 * 308.92686 * 12 11 9 14 14 O 1.42101 * 104.27759 * 181.06923 * 12 11 9 15 15 C 1.81396 * 104.45054 * 64.99907 * 12 11 9 16 16 C 1.52996 * 109.47320 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.53074 * 109.64235 * 17.77102 * 9 7 6 26 26 C 1.53407 * 108.29399 * 311.78674 * 25 9 7 27 27 O 1.35845 * 118.49596 * 180.18154 * 6 5 4 28 28 H 1.08997 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46921 * 299.99675 * 1 2 3 30 30 H 1.08994 * 109.46856 * 60.00238 * 1 2 3 31 31 H 1.09000 * 109.46921 * 240.00325 * 2 1 3 32 32 H 1.08998 * 109.47296 * 120.00011 * 2 1 3 33 33 H 1.07999 * 120.02330 * 359.91684 * 4 3 2 34 34 H 1.08003 * 119.89329 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.84582 * 359.97438 * 8 3 2 36 36 H 0.97001 * 120.00279 * 324.91777 * 11 9 7 37 37 H 1.09004 * 109.46947 * 59.99849 * 15 12 11 38 38 H 1.09000 * 109.47486 * 300.00277 * 15 12 11 39 39 H 1.09004 * 109.47066 * 60.00127 * 16 15 12 40 40 H 1.08994 * 109.47405 * 299.99958 * 16 15 12 41 41 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.69884 * 71.48822 * 25 9 7 43 43 H 1.09001 * 109.69966 * 192.04343 * 25 9 7 44 44 H 1.08996 * 109.68420 * 184.46936 * 26 25 9 45 45 H 1.09002 * 109.68011 * 304.99030 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2629 2.0729 1.1975 5 6 2.7232 3.3735 1.1963 6 6 2.9562 4.0328 -0.0067 7 6 2.7224 3.3792 -1.2030 8 6 2.2621 2.0722 -1.1959 9 6 2.9555 4.0580 -2.5289 10 1 1.9999 4.3725 -2.9484 11 7 3.6068 3.1214 -3.4481 12 16 3.2449 3.1601 -5.0636 13 8 1.8253 3.1126 -5.1060 14 8 4.0298 2.1164 -5.6238 15 6 3.8446 4.7781 -5.6232 16 6 3.5653 4.9360 -7.1192 17 6 4.0630 6.2804 -7.5839 18 1 4.5320 6.9546 -6.8825 19 6 3.9252 6.6472 -8.9059 20 7 4.3644 7.8183 -9.3126 21 14 3.1146 5.4809 -10.1191 22 1 1.6527 5.7395 -10.1531 23 1 3.6872 5.6976 -11.4721 24 1 3.3596 4.0785 -9.6968 25 6 3.8521 5.2825 -2.3295 26 6 3.2988 6.0981 -1.1539 27 8 3.4128 5.3116 0.0329 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0819 1.5646 2.1331 34 1 2.9026 3.8819 2.1322 35 1 2.0814 1.5608 -2.1298 36 1 4.2500 2.4786 -3.1105 37 1 4.9175 4.8494 -5.4447 38 1 3.3315 5.5662 -5.0722 39 1 2.4924 4.8645 -7.2980 40 1 4.0788 4.1479 -7.6698 41 1 4.2672 8.0764 -10.2425 42 1 4.8694 4.9607 -2.1069 43 1 3.8489 5.8913 -3.2337 44 1 3.8737 7.0173 -1.0420 45 1 2.2516 6.3399 -1.3356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661320140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = -102.705706 kcal Electronic energy + Delta-G solvation = -27713.892763 eV Core-core repulsion = 23822.989444 eV Total energy + Delta-G solvation = -3890.903319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02794 -38.19952 -36.89348 -36.31365 -35.64495 -34.03645 -33.82377 -31.62147 -31.42130 -30.71102 -29.21627 -26.06622 -25.32978 -24.28685 -23.04976 -22.07979 -21.33253 -19.96994 -19.11166 -18.11234 -17.80395 -17.13268 -16.89502 -16.20551 -15.88764 -15.56616 -15.21764 -14.91069 -14.59874 -14.36697 -14.19598 -13.97780 -13.88229 -13.66975 -13.40336 -13.29046 -12.97227 -12.84782 -12.24142 -12.09623 -11.95686 -11.84060 -11.80338 -11.75948 -11.60308 -11.30882 -11.26950 -11.20431 -11.16150 -10.98209 -10.62233 -10.49911 -10.20780 -9.92827 -9.59610 -9.34085 -8.99052 -8.70499 -8.23197 -6.20947 -4.22576 0.54504 1.08225 1.20373 2.86922 3.09645 3.23384 3.31066 3.34919 3.51759 4.02870 4.21664 4.32006 4.35352 4.50297 4.51495 4.61372 4.72611 4.76506 4.92052 5.06004 5.10033 5.10823 5.15235 5.21494 5.29010 5.31145 5.36584 5.40262 5.44750 5.54304 5.63179 5.69167 5.77881 5.85793 5.94342 5.97709 6.06384 6.21648 6.23530 6.43866 6.57256 6.75197 6.85993 6.94061 7.23376 7.49745 8.31388 8.79536 9.38681 10.91328 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003140 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.149215 B = 8915.289764 C =10120.351607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.119 4.119 4 C -0.079 4.079 5 C -0.151 4.151 6 C 0.140 3.860 7 C -0.163 4.163 8 C -0.065 4.065 9 C 0.196 3.804 10 H 0.106 0.894 11 N -1.116 6.116 12 S 2.586 3.414 13 O -0.964 6.964 14 O -0.963 6.963 15 C -0.584 4.584 16 C -0.007 4.007 17 C -0.520 4.520 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C -0.189 4.189 26 C 0.064 3.936 27 O -0.316 6.316 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.416 0.584 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.028 0.972 40 H 0.033 0.967 41 H 0.267 0.733 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -10.091 22.498 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.098 4.098 5 C -0.169 4.169 6 C 0.094 3.906 7 C -0.166 4.166 8 C -0.083 4.083 9 C 0.088 3.912 10 H 0.124 0.876 11 N -0.871 5.871 12 S 2.683 3.317 13 O -0.954 6.954 14 O -0.954 6.954 15 C -0.717 4.717 16 C -0.046 4.046 17 C -0.559 4.559 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.228 4.228 26 C -0.011 4.011 27 O -0.230 6.230 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.250 0.750 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.453 -10.477 21.935 24.713 hybrid contribution 0.235 -0.046 -0.692 0.732 sum -4.218 -10.523 21.243 24.078 Atomic orbital electron populations 1.21771 0.94819 1.01653 1.02319 1.20483 0.96156 0.92431 1.02773 1.19778 1.02394 0.96896 0.92872 1.20808 0.97671 0.93581 0.97708 1.20547 1.04656 0.95509 0.96234 1.18667 0.94571 0.84324 0.93002 1.19811 1.07240 0.96242 0.93290 1.20853 0.96142 0.93217 0.98103 1.19486 0.96157 0.87848 0.87668 0.87612 1.55864 1.57948 1.47416 1.25890 1.05742 0.75054 0.78335 0.72541 1.93559 1.29425 1.87307 1.85072 1.93572 1.71725 1.53783 1.76299 1.30403 1.12311 1.19180 1.09799 1.19414 0.97764 1.00667 0.86764 1.20828 1.40355 0.99304 0.95437 0.90387 1.24983 0.94785 0.95084 0.98211 1.69875 1.46145 1.20234 1.16998 0.86932 0.80340 0.82262 0.80962 1.19642 1.20728 1.18626 1.22981 1.01437 0.97613 1.00795 1.23007 1.02101 0.93500 0.82527 1.85990 1.77902 1.21343 1.37774 0.92486 0.92636 0.92359 0.91035 0.91155 0.85544 0.85184 0.85456 0.75027 0.85285 0.85702 0.95345 0.94906 0.92334 0.89149 0.88285 0.86734 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.90 37.16 0.37 -0.76 16 2 C -0.08 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.12 -1.16 5.13 -104.65 -0.54 -1.70 16 4 C -0.08 -0.71 9.70 -39.66 -0.38 -1.09 16 5 C -0.15 -1.48 9.94 -39.34 -0.39 -1.87 16 6 C 0.14 1.57 6.47 -39.22 -0.25 1.32 16 7 C -0.16 -1.87 5.48 -104.44 -0.57 -2.44 16 8 C -0.06 -0.73 8.85 -39.51 -0.35 -1.08 16 9 C 0.20 2.23 2.82 -69.01 -0.19 2.04 16 10 H 0.11 1.23 7.48 -51.93 -0.39 0.85 16 11 N -1.12 -13.53 4.62 -5.82 -0.03 -13.55 16 12 S 2.59 41.96 5.44 -107.50 -0.58 41.37 16 13 O -0.96 -18.07 17.39 -57.54 -1.00 -19.07 16 14 O -0.96 -18.41 18.08 -57.54 -1.04 -19.45 16 15 C -0.58 -10.06 5.43 37.16 0.20 -9.86 16 16 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 17 C -0.52 -14.11 9.66 -34.44 -0.33 -14.45 16 18 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 21 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 25 C -0.19 -1.86 5.65 -26.48 -0.15 -2.01 16 26 C 0.06 0.57 7.03 37.37 0.26 0.84 16 27 O -0.32 -3.45 10.27 -19.26 -0.20 -3.64 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.46 7.70 -52.48 -0.40 1.06 16 36 H 0.42 4.40 8.70 -34.47 -0.30 4.10 16 37 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 38 H 0.12 1.88 6.64 -51.92 -0.34 1.54 16 39 H 0.03 0.64 7.58 -51.93 -0.39 0.25 16 40 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.93 6.12 -51.93 -0.32 0.62 16 44 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -34.38 376.58 -10.54 -44.92 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.75 Total: 3.27 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -2.71 Total: -30.19 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.75 Total: -39.37 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.24 Total: -42.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 41.96 SS G_CDS: -0.58 Total: 41.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.38 -10.54 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661320140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.784 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds