Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.46777 * 2 1 4 4 C 1.38286 * 120.00535 * 90.00408 * 3 2 1 5 5 C 1.37971 * 119.95480 * 179.97438 * 4 3 2 6 6 C 1.39149 * 120.21804 * 0.02562 * 5 4 3 7 7 C 1.38312 * 119.70660 * 0.09203 * 6 5 4 8 8 C 1.38099 * 120.00818 * 270.02080 * 3 2 1 9 9 C 1.50771 * 121.44987 * 179.72065 * 7 6 5 10 10 H 1.09002 * 109.43740 * 257.72686 * 9 7 6 11 11 N 1.46499 * 109.43302 * 137.81128 * 9 7 6 12 12 S 1.65600 * 119.99834 * 144.91707 * 11 9 7 13 13 O 1.42099 * 104.27906 * 308.92686 * 12 11 9 14 14 O 1.42101 * 104.27759 * 181.06923 * 12 11 9 15 15 C 1.81396 * 104.45054 * 64.99907 * 12 11 9 16 16 C 1.52996 * 109.47320 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.53074 * 109.64235 * 17.77102 * 9 7 6 26 26 C 1.53407 * 108.29399 * 311.78674 * 25 9 7 27 27 O 1.35845 * 118.49596 * 180.18154 * 6 5 4 28 28 H 1.08997 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46921 * 299.99675 * 1 2 3 30 30 H 1.08994 * 109.46856 * 60.00238 * 1 2 3 31 31 H 1.09000 * 109.46921 * 240.00325 * 2 1 3 32 32 H 1.08998 * 109.47296 * 120.00011 * 2 1 3 33 33 H 1.07999 * 120.02330 * 359.91684 * 4 3 2 34 34 H 1.08003 * 119.89329 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.84582 * 359.97438 * 8 3 2 36 36 H 0.97001 * 120.00279 * 324.91777 * 11 9 7 37 37 H 1.09004 * 109.46947 * 59.99849 * 15 12 11 38 38 H 1.09000 * 109.47486 * 300.00277 * 15 12 11 39 39 H 1.09004 * 109.47066 * 60.00127 * 16 15 12 40 40 H 1.08994 * 109.47405 * 299.99958 * 16 15 12 41 41 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.69884 * 71.48822 * 25 9 7 43 43 H 1.09001 * 109.69966 * 192.04343 * 25 9 7 44 44 H 1.08996 * 109.68420 * 184.46936 * 26 25 9 45 45 H 1.09002 * 109.68011 * 304.99030 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2629 2.0729 1.1975 5 6 2.7232 3.3735 1.1963 6 6 2.9562 4.0328 -0.0067 7 6 2.7224 3.3792 -1.2030 8 6 2.2621 2.0722 -1.1959 9 6 2.9555 4.0580 -2.5289 10 1 1.9999 4.3725 -2.9484 11 7 3.6068 3.1214 -3.4481 12 16 3.2449 3.1601 -5.0636 13 8 1.8253 3.1126 -5.1060 14 8 4.0298 2.1164 -5.6238 15 6 3.8446 4.7781 -5.6232 16 6 3.5653 4.9360 -7.1192 17 6 4.0630 6.2804 -7.5839 18 1 4.5320 6.9546 -6.8825 19 6 3.9252 6.6472 -8.9059 20 7 4.3644 7.8183 -9.3126 21 14 3.1146 5.4809 -10.1191 22 1 1.6527 5.7395 -10.1531 23 1 3.6872 5.6976 -11.4721 24 1 3.3596 4.0785 -9.6968 25 6 3.8521 5.2825 -2.3295 26 6 3.2988 6.0981 -1.1539 27 8 3.4128 5.3116 0.0329 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0819 1.5646 2.1331 34 1 2.9026 3.8819 2.1322 35 1 2.0814 1.5608 -2.1298 36 1 4.2500 2.4786 -3.1105 37 1 4.9175 4.8494 -5.4447 38 1 3.3315 5.5662 -5.0722 39 1 2.4924 4.8645 -7.2980 40 1 4.0788 4.1479 -7.6698 41 1 4.2672 8.0764 -10.2425 42 1 4.8694 4.9607 -2.1069 43 1 3.8489 5.8913 -3.2337 44 1 3.8737 7.0173 -1.0420 45 1 2.2516 6.3399 -1.3356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661320140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = -126.227617 kcal Electronic energy + Delta-G solvation = -27714.912750 eV Core-core repulsion = 23822.989444 eV Total energy + Delta-G solvation = -3891.923306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80852 -38.93109 -38.27437 -37.31633 -37.05821 -35.91186 -34.49597 -33.50271 -32.38284 -31.48131 -29.93831 -27.91069 -26.12328 -25.04945 -23.81822 -23.21065 -22.72705 -20.82782 -20.33495 -19.43668 -18.92471 -18.54290 -17.88802 -17.28036 -17.06325 -16.63046 -16.39174 -16.24929 -15.83042 -15.32234 -15.22017 -15.01077 -14.84098 -14.73622 -14.66775 -14.10512 -13.99817 -13.85521 -13.65277 -13.30418 -13.24647 -13.19510 -13.08081 -13.00061 -12.80018 -12.64819 -12.45507 -12.24367 -12.00481 -11.87042 -11.83880 -11.71690 -11.68141 -11.38433 -11.30147 -10.84039 -10.62958 -9.80115 -8.99992 -8.36284 -6.41547 -0.79292 0.29668 0.42679 1.31707 1.34280 1.43465 1.69907 2.29459 2.35457 2.68006 2.76056 2.98050 3.15888 3.38505 3.63144 3.73342 3.80805 3.92763 3.95190 3.99884 4.08005 4.24526 4.30915 4.44404 4.44892 4.54434 4.56420 4.58112 4.61041 4.67918 4.78299 4.94413 5.00279 5.06691 5.07636 5.11052 5.15502 5.17725 5.31523 5.39806 5.45002 5.47451 5.70777 5.84859 5.97815 6.16998 6.46774 6.64796 7.22931 8.79016 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003140 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.149215 B = 8915.289764 C =10120.351607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.075 4.075 5 C -0.155 4.155 6 C 0.126 3.874 7 C -0.174 4.174 8 C -0.083 4.083 9 C 0.190 3.810 10 H 0.101 0.899 11 N -1.099 6.099 12 S 2.617 3.383 13 O -0.988 6.988 14 O -0.991 6.991 15 C -0.587 4.587 16 C -0.017 4.017 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.015 3.985 20 N -0.939 5.939 21 Si 0.922 3.078 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.250 1.250 25 C -0.188 4.188 26 C 0.060 3.940 27 O -0.324 6.324 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.425 0.575 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.269 0.731 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -11.381 24.314 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.093 4.093 5 C -0.174 4.174 6 C 0.080 3.920 7 C -0.176 4.176 8 C -0.101 4.101 9 C 0.083 3.917 10 H 0.119 0.881 11 N -0.858 5.858 12 S 2.713 3.287 13 O -0.977 6.977 14 O -0.981 6.981 15 C -0.719 4.719 16 C -0.056 4.056 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.579 5.579 21 Si 0.745 3.255 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.174 1.174 25 C -0.227 4.227 26 C -0.015 4.015 27 O -0.239 6.239 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.136 0.864 36 H 0.262 0.738 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.153 0.847 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.928 -11.772 23.753 26.964 hybrid contribution 0.397 0.373 -1.107 1.234 sum -4.531 -11.399 22.646 25.755 Atomic orbital electron populations 1.21759 0.94592 1.02302 1.01774 1.20535 0.96287 0.91471 1.03545 1.20032 1.01792 0.97719 0.92689 1.21128 0.96410 0.93257 0.98501 1.20847 1.04151 0.95930 0.96429 1.18872 0.95100 0.84639 0.93367 1.19795 1.08097 0.96477 0.93260 1.20923 0.97226 0.93488 0.98506 1.19643 0.96269 0.88203 0.87551 0.88111 1.55422 1.58161 1.47901 1.24280 1.04611 0.73965 0.77072 0.73036 1.93529 1.30973 1.87358 1.85889 1.93530 1.72209 1.54694 1.77682 1.30390 1.13939 1.21137 1.06462 1.19378 0.97660 0.98132 0.90470 1.21163 1.39339 1.00718 0.95096 0.92804 1.25836 0.95645 0.96578 1.00344 1.69999 1.48099 1.22182 1.17623 0.86074 0.79865 0.80745 0.78852 1.18541 1.20100 1.17399 1.22981 1.01268 0.97025 1.01460 1.23193 1.02891 0.93766 0.81626 1.85979 1.78011 1.21341 1.38540 0.91275 0.92096 0.93965 0.91402 0.89268 0.82788 0.83668 0.86389 0.73838 0.83684 0.83685 0.95008 0.95113 0.92165 0.88831 0.87926 0.84675 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.90 71.98 0.71 -1.28 16 2 C -0.08 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.12 -2.18 5.13 -19.88 -0.10 -2.28 16 4 C -0.08 -1.15 9.70 22.22 0.22 -0.94 16 5 C -0.16 -2.73 9.94 22.43 0.22 -2.51 16 6 C 0.13 2.65 6.47 22.51 0.15 2.79 16 7 C -0.17 -3.81 5.48 -19.75 -0.11 -3.92 16 8 C -0.08 -1.80 8.85 22.32 0.20 -1.60 16 9 C 0.19 4.16 2.82 44.29 0.12 4.29 16 10 H 0.10 2.29 7.48 -2.39 -0.02 2.28 16 11 N -1.10 -25.58 4.62 -172.32 -0.80 -26.38 16 12 S 2.62 82.56 5.44 -56.49 -0.31 82.26 16 13 O -0.99 -36.35 17.39 -127.65 -2.22 -38.57 16 14 O -0.99 -37.02 18.08 -127.65 -2.31 -39.32 16 15 C -0.59 -19.65 5.43 71.98 0.39 -19.26 16 16 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 17 C -0.52 -28.64 9.66 25.60 0.25 -28.39 16 18 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 19 C 0.01 0.83 5.47 84.66 0.46 1.29 16 20 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 21 Si 0.92 43.17 27.47 68.60 1.88 45.06 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 25 C -0.19 -3.44 5.65 30.76 0.17 -3.26 16 26 C 0.06 0.98 7.03 72.12 0.51 1.49 16 27 O -0.32 -6.58 10.27 -91.81 -0.94 -7.52 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.12 2.70 7.70 -2.91 -0.02 2.68 16 36 H 0.43 8.56 8.70 -96.75 -0.84 7.72 16 37 H 0.15 4.34 8.14 -2.39 -0.02 4.32 16 38 H 0.15 4.20 6.64 -2.39 -0.02 4.18 16 39 H 0.03 1.41 7.58 -2.38 -0.02 1.39 16 40 H 0.03 1.39 7.19 -2.39 -0.02 1.38 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.78 6.12 -2.39 -0.01 1.76 16 44 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -73.64 376.58 -0.80 -74.43 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.10 Total: 21.71 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 3.49 Total: -55.19 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -0.50 Total: -82.85 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -5.47 Total: -85.41 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: 82.56 SS G_CDS: -0.31 Total: 82.26 kcal Total: -73.64 -0.80 -74.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661320140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.794 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds