Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47035 * 2 1 4 4 C 1.38286 * 120.00934 * 270.01569 * 3 2 1 5 5 C 1.37969 * 119.96146 * 180.02562 * 4 3 2 6 6 C 1.39149 * 120.21648 * 0.02562 * 5 4 3 7 7 C 1.38372 * 119.68890 * 359.83627 * 6 5 4 8 8 C 1.38102 * 120.00758 * 89.99982 * 3 2 1 9 9 C 1.50769 * 121.40925 * 180.24871 * 7 6 5 10 10 H 1.09006 * 109.43466 * 102.26582 * 9 7 6 11 11 N 1.46501 * 109.44101 * 222.14727 * 9 7 6 12 12 S 1.65604 * 119.99710 * 215.20151 * 11 9 7 13 13 O 1.42102 * 104.27416 * 181.07234 * 12 11 9 14 14 O 1.42097 * 104.27278 * 308.92147 * 12 11 9 15 15 C 1.81390 * 104.45170 * 64.99910 * 12 11 9 16 16 C 1.53004 * 109.46994 * 180.02562 * 15 12 11 17 17 C 1.50701 * 109.47119 * 179.97438 * 16 15 12 18 18 H 1.08000 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99832 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47048 * 60.00425 * 21 19 17 23 23 H 1.48502 * 109.47016 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47111 * 300.00310 * 21 19 17 25 25 C 1.53076 * 109.66178 * 342.20739 * 9 7 6 26 26 C 1.53408 * 108.27889 * 48.26080 * 25 9 7 27 27 O 1.35846 * 118.50386 * 179.77899 * 6 5 4 28 28 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47389 * 300.00270 * 1 2 3 30 30 H 1.09003 * 109.46961 * 60.00528 * 1 2 3 31 31 H 1.08998 * 109.47389 * 239.99729 * 2 1 3 32 32 H 1.09006 * 109.46584 * 119.99827 * 2 1 3 33 33 H 1.07998 * 120.01793 * 0.09618 * 4 3 2 34 34 H 1.07998 * 119.89218 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.84538 * 0.02562 * 8 3 2 36 36 H 0.96999 * 120.00202 * 35.19179 * 11 9 7 37 37 H 1.09002 * 109.47122 * 299.99645 * 15 12 11 38 38 H 1.08993 * 109.47656 * 59.99937 * 15 12 11 39 39 H 1.09002 * 109.46706 * 299.99667 * 16 15 12 40 40 H 1.08998 * 109.47591 * 59.99287 * 16 15 12 41 41 H 0.97001 * 120.00119 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.69743 * 167.95455 * 25 9 7 43 43 H 1.09001 * 109.69795 * 288.52186 * 25 9 7 44 44 H 1.09003 * 109.68438 * 54.98040 * 26 25 9 45 45 H 1.09004 * 109.68072 * 175.53843 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2625 2.0730 -1.1975 5 6 2.7229 3.3736 -1.1963 6 6 2.9573 4.0325 0.0067 7 6 2.7233 3.3782 1.2033 8 6 2.2625 2.0720 1.1959 9 6 2.9588 4.0568 2.5289 10 1 2.0040 4.3730 2.9492 11 7 3.6085 3.1191 3.4481 12 16 3.2454 3.1572 5.0633 13 8 4.0671 2.1464 5.6311 14 8 3.4062 4.5216 5.4264 15 6 1.4979 2.6781 5.1459 16 6 1.0380 2.6765 6.6052 17 6 -0.4141 2.2790 6.6738 18 1 -0.9549 2.0508 5.7672 19 6 -1.0521 2.2067 7.8939 20 7 -0.3937 2.4851 8.9979 21 14 -2.8517 1.7134 7.9790 22 1 -3.0200 0.3541 7.4052 23 1 -3.2981 1.7120 9.3954 24 1 -3.6678 2.6823 7.2042 25 6 3.8575 5.2797 2.3291 26 6 3.3040 6.0968 1.1546 27 8 3.4147 5.3110 -0.0328 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0810 1.5650 -2.1330 34 1 2.9020 3.8821 -2.1322 35 1 2.0821 1.5605 2.1298 36 1 4.2513 2.4759 3.1105 37 1 0.8989 3.3894 4.5773 38 1 1.3743 1.6805 4.7246 39 1 1.6370 1.9654 7.1741 40 1 1.1615 3.6743 7.0262 41 1 -0.8427 2.4346 9.8562 42 1 3.8560 5.8884 3.2333 43 1 4.8741 4.9560 2.1057 44 1 2.2573 6.3401 1.3375 45 1 3.8806 7.0150 1.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662682161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -107.365875 kcal Electronic energy + Delta-G solvation = -27878.543295 eV Core-core repulsion = 23987.437895 eV Total energy + Delta-G solvation = -3891.105399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98731 -38.15963 -36.77030 -36.21621 -35.48854 -33.94004 -33.76251 -31.42748 -31.21822 -30.66499 -29.16071 -25.65582 -25.28468 -24.23594 -22.97906 -22.01459 -21.74470 -19.87973 -19.00330 -18.07525 -17.60938 -17.05617 -16.53143 -16.10124 -15.83769 -15.41259 -15.12586 -14.83544 -14.58689 -14.52264 -14.18930 -13.87540 -13.81696 -13.49073 -13.33062 -13.21536 -12.87518 -12.55240 -12.16019 -12.01727 -11.82387 -11.75378 -11.65461 -11.60628 -11.57109 -11.13461 -11.11393 -11.08518 -11.01374 -10.93111 -10.56092 -10.46417 -10.41584 -9.92606 -9.62922 -9.14666 -8.96387 -8.53016 -8.19375 -6.15331 -4.21217 0.67482 1.12000 1.24042 2.98613 3.14100 3.25039 3.30196 3.31729 3.55439 4.12746 4.29321 4.35219 4.48497 4.55003 4.59466 4.68470 4.77342 4.79653 4.97741 5.07575 5.14721 5.19888 5.23231 5.27931 5.32369 5.40476 5.43262 5.50460 5.57944 5.68745 5.71371 5.78487 5.89083 5.92484 6.01719 6.07011 6.11633 6.26504 6.41978 6.48636 6.61008 6.99774 7.25315 7.26305 7.31364 7.77153 8.13657 8.81839 9.43762 10.95629 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010371 B = 0.003785 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.251278 B = 7396.458345 C = 8921.528178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.116 4.116 4 C -0.080 4.080 5 C -0.151 4.151 6 C 0.140 3.860 7 C -0.168 4.168 8 C -0.067 4.067 9 C 0.203 3.797 10 H 0.097 0.903 11 N -1.118 6.118 12 S 2.589 3.411 13 O -0.964 6.964 14 O -0.963 6.963 15 C -0.590 4.590 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.178 4.178 26 C 0.063 3.937 27 O -0.318 6.318 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.415 0.585 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 1.307 -21.557 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.116 4.116 4 C -0.098 4.098 5 C -0.169 4.169 6 C 0.094 3.906 7 C -0.170 4.170 8 C -0.085 4.085 9 C 0.095 3.905 10 H 0.115 0.885 11 N -0.873 5.873 12 S 2.686 3.314 13 O -0.955 6.955 14 O -0.953 6.953 15 C -0.724 4.724 16 C -0.010 4.010 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.201 1.201 25 C -0.217 4.217 26 C -0.013 4.013 27 O -0.232 6.232 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.248 0.752 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.550 1.800 -20.733 21.817 hybrid contribution -1.332 -0.724 -0.113 1.520 sum 5.218 1.076 -20.846 21.516 Atomic orbital electron populations 1.21772 0.94710 1.01782 1.02352 1.20493 0.96230 0.92335 1.02832 1.19788 1.02078 0.96925 0.92844 1.20812 0.97650 0.93560 0.97759 1.20540 1.04690 0.95524 0.96196 1.18672 0.94614 0.84278 0.93026 1.19915 1.07278 0.96305 0.93535 1.20845 0.96313 0.93154 0.98207 1.19379 0.95839 0.88009 0.87291 0.88504 1.55980 1.56739 1.47420 1.27190 1.05722 0.78824 0.74794 0.72025 1.93564 1.66220 1.60473 1.75193 1.93541 1.86120 1.34712 1.80962 1.30473 1.20286 1.10883 1.10738 1.18956 0.98651 0.99017 0.84358 1.20946 0.94494 1.47609 0.93013 0.92094 1.25058 0.98633 0.95064 0.95627 1.69943 1.36866 1.47965 0.98035 0.86536 0.84422 0.79165 0.77196 1.20057 1.21044 1.20076 1.22814 1.00789 0.97591 1.00549 1.23033 1.02013 0.93503 0.82704 1.85970 1.77986 1.21451 1.37769 0.92424 0.92201 0.92726 0.91213 0.90887 0.85557 0.85260 0.85370 0.75162 0.86376 0.86042 0.94821 0.94805 0.92438 0.87802 0.89735 0.91268 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.12 -1.17 5.13 -104.65 -0.54 -1.70 16 4 C -0.08 -0.74 9.70 -39.66 -0.38 -1.12 16 5 C -0.15 -1.52 9.94 -39.34 -0.39 -1.91 16 6 C 0.14 1.60 6.47 -39.19 -0.25 1.35 16 7 C -0.17 -1.94 5.49 -104.44 -0.57 -2.51 16 8 C -0.07 -0.75 8.85 -39.53 -0.35 -1.10 16 9 C 0.20 2.40 2.69 -69.01 -0.19 2.22 16 10 H 0.10 1.11 7.15 -51.93 -0.37 0.74 16 11 N -1.12 -14.27 4.61 -5.82 -0.03 -14.30 16 12 S 2.59 44.52 5.38 -107.50 -0.58 43.95 16 13 O -0.96 -19.57 18.08 -57.54 -1.04 -20.61 16 14 O -0.96 -18.90 17.41 -57.54 -1.00 -19.90 16 15 C -0.59 -10.85 5.90 37.16 0.22 -10.63 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.18 -1.93 5.80 -26.48 -0.15 -2.08 16 26 C 0.06 0.58 7.03 37.37 0.26 0.84 16 27 O -0.32 -3.53 10.27 -19.26 -0.20 -3.73 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.38 7.69 -52.49 -0.40 0.98 16 36 H 0.41 4.65 8.70 -34.47 -0.30 4.35 16 37 H 0.12 1.93 7.44 -51.92 -0.39 1.54 16 38 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.10 1.18 7.73 -51.93 -0.40 0.78 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -34.33 382.71 -10.95 -45.28 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.89 Total: 3.78 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -2.70 Total: -30.73 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.71 Total: -39.72 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -2.24 Total: -44.24 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 44.52 SS G_CDS: -0.58 Total: 43.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.33 -10.95 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662682161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.082 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds