Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47035 * 2 1 4 4 C 1.38286 * 120.00934 * 270.01569 * 3 2 1 5 5 C 1.37969 * 119.96146 * 180.02562 * 4 3 2 6 6 C 1.39149 * 120.21648 * 0.02562 * 5 4 3 7 7 C 1.38372 * 119.68890 * 359.83627 * 6 5 4 8 8 C 1.38102 * 120.00758 * 89.99982 * 3 2 1 9 9 C 1.50769 * 121.40925 * 180.24871 * 7 6 5 10 10 H 1.09006 * 109.43466 * 102.26582 * 9 7 6 11 11 N 1.46501 * 109.44101 * 222.14727 * 9 7 6 12 12 S 1.65604 * 119.99710 * 215.20151 * 11 9 7 13 13 O 1.42102 * 104.27416 * 181.07234 * 12 11 9 14 14 O 1.42097 * 104.27278 * 308.92147 * 12 11 9 15 15 C 1.81390 * 104.45170 * 64.99910 * 12 11 9 16 16 C 1.53004 * 109.46994 * 180.02562 * 15 12 11 17 17 C 1.50701 * 109.47119 * 179.97438 * 16 15 12 18 18 H 1.08000 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99832 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47048 * 60.00425 * 21 19 17 23 23 H 1.48502 * 109.47016 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47111 * 300.00310 * 21 19 17 25 25 C 1.53076 * 109.66178 * 342.20739 * 9 7 6 26 26 C 1.53408 * 108.27889 * 48.26080 * 25 9 7 27 27 O 1.35846 * 118.50386 * 179.77899 * 6 5 4 28 28 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47389 * 300.00270 * 1 2 3 30 30 H 1.09003 * 109.46961 * 60.00528 * 1 2 3 31 31 H 1.08998 * 109.47389 * 239.99729 * 2 1 3 32 32 H 1.09006 * 109.46584 * 119.99827 * 2 1 3 33 33 H 1.07998 * 120.01793 * 0.09618 * 4 3 2 34 34 H 1.07998 * 119.89218 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.84538 * 0.02562 * 8 3 2 36 36 H 0.96999 * 120.00202 * 35.19179 * 11 9 7 37 37 H 1.09002 * 109.47122 * 299.99645 * 15 12 11 38 38 H 1.08993 * 109.47656 * 59.99937 * 15 12 11 39 39 H 1.09002 * 109.46706 * 299.99667 * 16 15 12 40 40 H 1.08998 * 109.47591 * 59.99287 * 16 15 12 41 41 H 0.97001 * 120.00119 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.69743 * 167.95455 * 25 9 7 43 43 H 1.09001 * 109.69795 * 288.52186 * 25 9 7 44 44 H 1.09003 * 109.68438 * 54.98040 * 26 25 9 45 45 H 1.09004 * 109.68072 * 175.53843 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2625 2.0730 -1.1975 5 6 2.7229 3.3736 -1.1963 6 6 2.9573 4.0325 0.0067 7 6 2.7233 3.3782 1.2033 8 6 2.2625 2.0720 1.1959 9 6 2.9588 4.0568 2.5289 10 1 2.0040 4.3730 2.9492 11 7 3.6085 3.1191 3.4481 12 16 3.2454 3.1572 5.0633 13 8 4.0671 2.1464 5.6311 14 8 3.4062 4.5216 5.4264 15 6 1.4979 2.6781 5.1459 16 6 1.0380 2.6765 6.6052 17 6 -0.4141 2.2790 6.6738 18 1 -0.9549 2.0508 5.7672 19 6 -1.0521 2.2067 7.8939 20 7 -0.3937 2.4851 8.9979 21 14 -2.8517 1.7134 7.9790 22 1 -3.0200 0.3541 7.4052 23 1 -3.2981 1.7120 9.3954 24 1 -3.6678 2.6823 7.2042 25 6 3.8575 5.2797 2.3291 26 6 3.3040 6.0968 1.1546 27 8 3.4147 5.3110 -0.0328 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0810 1.5650 -2.1330 34 1 2.9020 3.8821 -2.1322 35 1 2.0821 1.5605 2.1298 36 1 4.2513 2.4759 3.1105 37 1 0.8989 3.3894 4.5773 38 1 1.3743 1.6805 4.7246 39 1 1.6370 1.9654 7.1741 40 1 1.1615 3.6743 7.0262 41 1 -0.8427 2.4346 9.8562 42 1 3.8560 5.8884 3.2333 43 1 4.8741 4.9560 2.1057 44 1 2.2573 6.3401 1.3375 45 1 3.8806 7.0150 1.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662682161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -130.374177 kcal Electronic energy + Delta-G solvation = -27879.541010 eV Core-core repulsion = 23987.437895 eV Total energy + Delta-G solvation = -3892.103114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79207 -38.91551 -38.23936 -37.29381 -36.99987 -35.90775 -34.46670 -33.14830 -32.39650 -31.44658 -29.91626 -27.61344 -26.11134 -25.02158 -23.75928 -23.64262 -22.76423 -20.76541 -20.31847 -19.16450 -18.88762 -18.36565 -17.83050 -17.23609 -17.05418 -16.60509 -16.51645 -16.22081 -15.84810 -15.23209 -15.16484 -14.97656 -14.73170 -14.67486 -14.45895 -14.08148 -13.98196 -13.74877 -13.63641 -13.25371 -13.23965 -13.14707 -12.92738 -12.81871 -12.80655 -12.61342 -12.48044 -12.24151 -12.18130 -11.86377 -11.82236 -11.74635 -11.67095 -11.37449 -11.23386 -10.63964 -10.57121 -9.79068 -8.98072 -8.26051 -6.39921 -0.75958 0.31568 0.45032 1.40901 1.43832 1.52025 1.75410 2.36291 2.37847 2.73463 2.76367 3.07599 3.21514 3.40418 3.65668 3.74882 3.82240 3.96453 3.97824 4.01739 4.11892 4.26639 4.31580 4.45908 4.49925 4.57040 4.59787 4.62379 4.68351 4.73393 4.82137 5.00674 5.04109 5.12066 5.14744 5.19570 5.25913 5.27133 5.33630 5.43024 5.46879 5.67866 5.73634 5.86675 5.99017 6.05877 6.47777 6.73283 7.30314 8.85969 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010371 B = 0.003785 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.251278 B = 7396.458345 C = 8921.528178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.076 4.076 5 C -0.155 4.155 6 C 0.125 3.875 7 C -0.176 4.176 8 C -0.082 4.082 9 C 0.194 3.806 10 H 0.100 0.900 11 N -1.099 6.099 12 S 2.618 3.382 13 O -0.996 6.996 14 O -0.988 6.988 15 C -0.589 4.589 16 C 0.022 3.978 17 C -0.538 4.538 18 H 0.075 0.925 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.263 1.263 25 C -0.178 4.178 26 C 0.062 3.938 27 O -0.325 6.325 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.424 0.576 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.006 0.994 40 H 0.009 0.991 41 H 0.267 0.733 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 0.887 -24.317 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.174 4.174 6 C 0.079 3.921 7 C -0.178 4.178 8 C -0.101 4.101 9 C 0.087 3.913 10 H 0.118 0.882 11 N -0.858 5.858 12 S 2.715 3.285 13 O -0.986 6.986 14 O -0.977 6.977 15 C -0.721 4.721 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.188 1.188 25 C -0.218 4.218 26 C -0.013 4.013 27 O -0.239 6.239 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.261 0.739 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.588 1.372 -23.505 24.199 hybrid contribution -0.980 -0.583 0.654 1.315 sum 4.608 0.789 -22.851 23.324 Atomic orbital electron populations 1.21763 0.94749 1.02196 1.01819 1.20529 0.96114 0.91591 1.03584 1.20014 1.01663 0.97602 0.92777 1.21124 0.96410 0.93260 0.98547 1.20822 1.04230 0.95909 0.96392 1.18896 0.95114 0.84607 0.93437 1.19841 1.08209 0.96577 0.93201 1.20967 0.97019 0.93275 0.98821 1.19600 0.96151 0.88153 0.87383 0.88223 1.55488 1.56715 1.47981 1.25595 1.04591 0.77691 0.73554 0.72681 1.93514 1.66884 1.61405 1.76830 1.93508 1.86165 1.35933 1.82130 1.30363 1.21901 1.13105 1.06754 1.18808 0.98047 0.96687 0.88154 1.21461 0.95616 1.46987 0.93655 0.90664 1.26077 1.03665 0.94995 0.95268 1.70091 1.39023 1.49480 0.98722 0.85408 0.78458 0.79391 0.77280 1.18803 1.20999 1.18802 1.22795 1.00670 0.97241 1.01053 1.23197 1.02867 0.93726 0.81476 1.85961 1.78094 1.21468 1.38426 0.91569 0.93800 0.92165 0.89434 0.91214 0.82958 0.83753 0.85540 0.73921 0.84123 0.83908 0.97537 0.97311 0.92394 0.88554 0.89785 0.90549 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.89 71.98 0.71 -1.54 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.12 -2.17 5.13 -19.88 -0.10 -2.27 16 4 C -0.08 -1.19 9.70 22.22 0.22 -0.98 16 5 C -0.16 -2.77 9.94 22.42 0.22 -2.54 16 6 C 0.13 2.65 6.47 22.52 0.15 2.80 16 7 C -0.18 -3.82 5.49 -19.75 -0.11 -3.93 16 8 C -0.08 -1.73 8.85 22.30 0.20 -1.53 16 9 C 0.19 4.42 2.69 44.29 0.12 4.53 16 10 H 0.10 2.19 7.15 -2.38 -0.02 2.17 16 11 N -1.10 -27.34 4.61 -172.31 -0.79 -28.13 16 12 S 2.62 90.71 5.38 -56.49 -0.30 90.41 16 13 O -1.00 -41.06 18.08 -127.65 -2.31 -43.37 16 14 O -0.99 -39.25 17.41 -127.65 -2.22 -41.47 16 15 C -0.59 -21.59 5.90 71.98 0.42 -21.16 16 16 C 0.02 1.13 4.98 29.85 0.15 1.28 16 17 C -0.54 -29.33 9.11 25.60 0.23 -29.09 16 18 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 21 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 C -0.18 -3.68 5.80 30.76 0.18 -3.50 16 26 C 0.06 1.05 7.03 72.12 0.51 1.55 16 27 O -0.33 -6.66 10.27 -91.82 -0.94 -7.60 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.07 1.08 8.09 -2.38 -0.02 1.06 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.13 2.60 7.69 -2.91 -0.02 2.57 16 36 H 0.42 9.18 8.70 -96.74 -0.84 8.34 16 37 H 0.14 4.46 7.44 -2.39 -0.02 4.45 16 38 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.10 2.14 7.73 -2.38 -0.02 2.12 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -74.57 382.71 -0.57 -75.14 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.15 Total: 23.29 kcal Atomic # 6 Polarization: -60.58 SS G_CDS: 3.54 Total: -57.04 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -0.51 Total: -84.13 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -5.47 Total: -92.44 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 90.71 SS G_CDS: -0.30 Total: 90.41 kcal Total: -74.57 -0.57 -75.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662682161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.232 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds