Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.50033 * 2 1 4 4 O 1.42893 * 109.46895 * 300.06393 * 3 2 1 5 5 C 1.53044 * 109.52527 * 239.91622 * 2 1 3 6 6 C 1.53038 * 109.53911 * 301.40210 * 5 2 1 7 7 C 1.53193 * 109.31270 * 298.63411 * 6 5 2 8 8 N 1.46929 * 108.77812 * 54.63348 * 7 6 5 9 9 S 1.65598 * 120.63155 * 126.41314 * 8 7 6 10 10 O 1.42102 * 106.40078 * 23.51818 * 9 8 7 11 11 O 1.42101 * 106.40291 * 156.44051 * 9 8 7 12 12 C 1.76205 * 107.21762 * 269.98218 * 9 8 7 13 13 C 1.38649 * 119.87548 * 89.99871 * 12 9 8 14 14 C 1.38617 * 120.50252 * 179.97438 * 13 12 9 15 15 C 1.37639 * 120.24583 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74437 * 359.97438 * 15 14 13 17 17 C 1.41397 * 120.24382 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99826 * 150.23994 * 17 16 15 19 19 C 1.39939 * 120.00327 * 330.24793 * 17 16 15 20 20 N 1.30825 * 120.00344 * 161.73810 * 19 17 16 21 21 Si 1.86801 * 119.99789 * 341.73659 * 19 17 16 22 22 H 1.48506 * 109.46874 * 95.41664 * 21 19 17 23 23 H 1.48498 * 109.47548 * 215.41284 * 21 19 17 24 24 H 1.48500 * 109.47209 * 335.41700 * 21 19 17 25 25 C 1.37595 * 119.87347 * 269.72442 * 12 9 8 26 26 C 1.46927 * 118.73552 * 306.39403 * 8 7 6 27 27 H 1.09000 * 109.46647 * 60.00152 * 1 2 3 28 28 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46930 * 300.00068 * 1 2 3 30 30 H 1.08998 * 109.46906 * 60.06447 * 3 2 1 31 31 H 1.09002 * 109.46986 * 180.02562 * 3 2 1 32 32 H 0.96705 * 114.00250 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.45658 * 61.42338 * 5 2 1 34 34 H 1.08996 * 109.45814 * 181.37822 * 5 2 1 35 35 H 1.09000 * 109.49742 * 178.68045 * 6 5 2 36 36 H 1.09006 * 109.49786 * 58.58113 * 6 5 2 37 37 H 1.09002 * 109.58488 * 294.84520 * 7 6 5 38 38 H 1.08996 * 109.58659 * 174.42109 * 7 6 5 39 39 H 1.08000 * 119.75393 * 359.95651 * 13 12 9 40 40 H 1.07994 * 119.88075 * 180.02562 * 14 13 12 41 41 H 1.07997 * 120.13020 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.12662 * 359.97438 * 25 12 9 44 44 H 1.08993 * 109.58853 * 293.81874 * 26 8 7 45 45 H 1.09000 * 109.69976 * 173.46368 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 8 1.5635 2.1165 -1.1660 5 6 2.0415 -0.7230 -1.2481 6 6 1.5043 -2.1559 -1.2658 7 6 2.0152 -2.9038 -0.0303 8 7 1.6521 -2.1380 1.1699 9 16 0.8205 -2.8557 2.4091 10 8 1.0767 -4.2499 2.3098 11 8 1.1028 -2.0947 3.5755 12 6 -0.8968 -2.6406 2.0782 13 6 -1.5824 -3.5929 1.3397 14 6 -2.9335 -3.4371 1.0722 15 6 -3.6096 -2.3322 1.5378 16 6 -2.9240 -1.3594 2.2882 17 6 -3.6079 -0.2200 2.7712 18 1 -3.2862 0.2555 3.6861 19 6 -4.7018 0.2916 2.0640 20 7 -5.5466 1.0951 2.6575 21 14 -4.9556 -0.1728 0.2726 22 1 -5.8983 -1.3171 0.1867 23 1 -5.5171 0.9874 -0.4649 24 1 -3.6534 -0.5580 -0.3283 25 6 -1.5535 -1.5310 2.5584 26 6 2.0413 -0.7235 1.2498 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6786 1.9559 0.8906 31 1 3.1308 1.4417 -0.0005 32 1 1.8495 3.0379 -1.2323 33 1 1.6995 -0.1960 -2.1388 34 1 3.1312 -0.7438 -1.2347 35 1 1.8498 -2.6629 -2.1668 36 1 0.4145 -2.1361 -1.2542 37 1 3.0992 -3.0037 -0.0860 38 1 1.5570 -3.8918 0.0141 39 1 -1.0598 -4.4627 0.9698 40 1 -3.4578 -4.1853 0.4963 41 1 -4.6621 -2.2125 1.3279 42 1 -6.3046 1.4499 2.1671 43 1 -1.0186 -0.7928 3.1376 44 1 3.1274 -0.6455 1.2985 45 1 1.6022 -0.2713 2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771685973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -112.726778 kcal Electronic energy + Delta-G solvation = -29522.969796 eV Core-core repulsion = 25631.631931 eV Total energy + Delta-G solvation = -3891.337866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.53068 -37.93137 -36.87636 -36.52310 -35.42774 -33.79395 -33.11694 -31.78351 -30.73408 -30.18920 -26.89603 -25.98982 -25.38772 -24.48928 -22.41192 -21.93403 -20.90606 -19.09548 -18.30127 -18.07544 -17.43284 -17.17562 -16.33873 -15.67682 -15.40252 -15.18953 -14.82228 -14.66300 -14.47641 -14.27103 -13.83361 -13.71620 -13.25463 -13.16013 -12.89954 -12.74081 -12.56221 -12.21313 -11.91758 -11.85455 -11.73401 -11.69683 -11.53601 -11.45933 -11.23163 -11.07190 -10.97137 -10.86061 -10.74545 -10.39240 -10.28455 -10.19358 -10.01270 -9.92755 -9.75111 -9.34842 -8.80347 -8.25701 -7.88180 -7.09807 -4.64973 0.83922 1.90178 2.41147 2.97755 3.09731 3.17267 3.29924 3.83197 4.10388 4.18281 4.27758 4.60336 4.71947 4.83392 4.92827 5.12203 5.16300 5.19726 5.25963 5.35533 5.41434 5.54059 5.66995 5.73177 5.74103 5.80131 5.88645 5.99712 6.03142 6.17036 6.18591 6.19739 6.30712 6.43143 6.44620 6.46789 6.51520 6.73432 6.80869 6.86130 7.07862 7.18627 7.38682 7.58411 7.61281 7.76658 8.17593 8.41847 8.60689 9.92080 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.005793 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.789713 B = 4832.420940 C = 6118.092694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.087 3.913 4 O -0.566 6.566 5 C -0.097 4.097 6 C -0.141 4.141 7 C 0.124 3.876 8 N -0.995 5.995 9 S 2.685 3.315 10 O -0.970 6.970 11 O -0.966 6.966 12 C -0.623 4.623 13 C -0.156 4.156 14 C -0.091 4.091 15 C -0.198 4.198 16 C 0.076 3.924 17 C -0.443 4.443 18 H 0.095 0.905 19 C 0.085 3.915 20 N -0.800 5.800 21 Si 0.905 3.095 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.241 1.241 25 C -0.098 4.098 26 C 0.134 3.866 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.375 0.625 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 -0.211 -8.775 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C 0.009 3.991 4 O -0.371 6.371 5 C -0.135 4.135 6 C -0.180 4.180 7 C -0.001 4.001 8 N -0.831 5.831 9 S 2.781 3.219 10 O -0.960 6.960 11 O -0.957 6.957 12 C -0.715 4.715 13 C -0.177 4.177 14 C -0.111 4.111 15 C -0.217 4.217 16 C 0.072 3.928 17 C -0.471 4.471 18 H 0.113 0.887 19 C -0.135 4.135 20 N -0.424 5.424 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.165 1.165 25 C -0.119 4.119 26 C 0.008 3.992 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.222 0.778 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.210 -1.039 -8.093 15.527 hybrid contribution -0.834 0.755 -0.998 1.503 sum 12.377 -0.284 -9.090 15.359 Atomic orbital electron populations 1.21931 0.92339 1.03174 1.02628 1.20943 0.98000 0.92847 0.95872 1.22116 0.96625 0.92586 0.87783 1.86491 1.77539 1.28646 1.44419 1.21403 0.99531 0.94971 0.97601 1.22017 1.02464 0.96107 0.97378 1.21394 1.00329 0.94601 0.83819 1.57715 1.71485 1.19401 1.34522 1.01930 0.74356 0.72927 0.72670 1.93512 1.85433 1.30817 1.86261 1.93532 1.84882 1.72165 1.45108 1.29990 1.22818 1.04822 1.13822 1.20011 0.95099 0.98713 1.03904 1.20682 0.94275 0.97069 0.99035 1.21279 0.98690 0.95724 1.06039 1.17762 0.91184 0.92882 0.90996 1.19515 1.09069 1.09467 1.09036 0.88712 1.26147 0.93185 0.93130 1.01062 1.69684 1.09616 1.24661 1.38394 0.86389 0.80875 0.77660 0.81928 1.19581 1.21462 1.16453 1.20796 0.94528 0.95519 1.01036 1.21329 0.99887 0.79883 0.98119 0.92142 0.91312 0.92111 0.93193 0.93841 0.77828 0.91043 0.92430 0.91093 0.90483 0.91334 0.89210 0.87265 0.88026 0.87741 0.90222 0.86550 0.91174 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.64 37.16 0.28 -1.97 16 2 C -0.07 -0.93 0.60 -154.38 -0.09 -1.02 16 3 C 0.09 0.92 5.92 37.16 0.22 1.14 16 4 O -0.57 -6.16 12.29 -35.23 -0.43 -6.59 16 5 C -0.10 -1.09 4.59 -26.69 -0.12 -1.21 16 6 C -0.14 -1.59 5.74 -26.61 -0.15 -1.74 16 7 C 0.12 1.49 6.38 -3.71 -0.02 1.46 16 8 N -0.99 -14.23 2.73 -113.52 -0.31 -14.54 16 9 S 2.68 48.62 5.69 -107.50 -0.61 48.01 16 10 O -0.97 -18.90 15.98 -57.17 -0.91 -19.82 16 11 O -0.97 -19.46 15.98 -57.17 -0.91 -20.38 16 12 C -0.62 -12.65 5.04 -39.66 -0.20 -12.85 16 13 C -0.16 -3.12 9.53 -39.29 -0.37 -3.50 16 14 C -0.09 -1.88 10.02 -39.66 -0.40 -2.28 16 15 C -0.20 -4.53 7.18 -38.87 -0.28 -4.81 16 16 C 0.08 1.83 5.11 -106.82 -0.55 1.28 16 17 C -0.44 -11.43 9.57 -37.74 -0.36 -11.79 16 18 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 19 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 20 N -0.80 -20.53 13.93 55.55 0.77 -19.75 16 21 Si 0.91 19.79 24.52 -169.99 -4.17 15.63 16 22 H -0.27 -5.73 6.71 56.52 0.38 -5.36 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.24 -5.33 6.86 56.52 0.39 -4.94 16 25 C -0.10 -2.17 8.93 -38.87 -0.35 -2.52 16 26 C 0.13 1.71 5.05 -3.71 -0.02 1.69 16 27 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 28 H 0.07 1.16 4.91 -51.93 -0.26 0.90 16 29 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.38 2.39 9.12 45.56 0.42 2.81 16 33 H 0.07 0.85 7.65 -51.93 -0.40 0.46 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.01 6.34 -51.93 -0.33 0.68 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.10 7.12 -51.93 -0.37 0.73 16 39 H 0.11 1.96 7.60 -52.49 -0.40 1.56 16 40 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.10 2.38 4.73 -52.49 -0.25 2.13 16 42 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.12 2.50 7.60 -52.48 -0.40 2.10 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.28 7.13 -51.93 -0.37 0.90 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -30.45 359.76 -9.39 -39.83 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.73 Total: 8.27 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -2.51 Total: -36.08 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.46 Total: -34.29 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.26 Total: -46.78 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.17 Total: 15.63 kcal Atomic # 16 Polarization: 48.62 SS G_CDS: -0.61 Total: 48.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.45 -9.39 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771685973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.897 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds