Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.50033 * 2 1 4 4 O 1.42893 * 109.46895 * 300.06393 * 3 2 1 5 5 C 1.53044 * 109.52527 * 239.91622 * 2 1 3 6 6 C 1.53038 * 109.53911 * 301.40210 * 5 2 1 7 7 C 1.53193 * 109.31270 * 298.63411 * 6 5 2 8 8 N 1.46929 * 108.77812 * 54.63348 * 7 6 5 9 9 S 1.65598 * 120.63155 * 126.41314 * 8 7 6 10 10 O 1.42102 * 106.40078 * 23.51818 * 9 8 7 11 11 O 1.42101 * 106.40291 * 156.44051 * 9 8 7 12 12 C 1.76205 * 107.21762 * 269.98218 * 9 8 7 13 13 C 1.38649 * 119.87548 * 89.99871 * 12 9 8 14 14 C 1.38617 * 120.50252 * 179.97438 * 13 12 9 15 15 C 1.37639 * 120.24583 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74437 * 359.97438 * 15 14 13 17 17 C 1.41397 * 120.24382 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99826 * 150.23994 * 17 16 15 19 19 C 1.39939 * 120.00327 * 330.24793 * 17 16 15 20 20 N 1.30825 * 120.00344 * 161.73810 * 19 17 16 21 21 Si 1.86801 * 119.99789 * 341.73659 * 19 17 16 22 22 H 1.48506 * 109.46874 * 95.41664 * 21 19 17 23 23 H 1.48498 * 109.47548 * 215.41284 * 21 19 17 24 24 H 1.48500 * 109.47209 * 335.41700 * 21 19 17 25 25 C 1.37595 * 119.87347 * 269.72442 * 12 9 8 26 26 C 1.46927 * 118.73552 * 306.39403 * 8 7 6 27 27 H 1.09000 * 109.46647 * 60.00152 * 1 2 3 28 28 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46930 * 300.00068 * 1 2 3 30 30 H 1.08998 * 109.46906 * 60.06447 * 3 2 1 31 31 H 1.09002 * 109.46986 * 180.02562 * 3 2 1 32 32 H 0.96705 * 114.00250 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.45658 * 61.42338 * 5 2 1 34 34 H 1.08996 * 109.45814 * 181.37822 * 5 2 1 35 35 H 1.09000 * 109.49742 * 178.68045 * 6 5 2 36 36 H 1.09006 * 109.49786 * 58.58113 * 6 5 2 37 37 H 1.09002 * 109.58488 * 294.84520 * 7 6 5 38 38 H 1.08996 * 109.58659 * 174.42109 * 7 6 5 39 39 H 1.08000 * 119.75393 * 359.95651 * 13 12 9 40 40 H 1.07994 * 119.88075 * 180.02562 * 14 13 12 41 41 H 1.07997 * 120.13020 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.12662 * 359.97438 * 25 12 9 44 44 H 1.08993 * 109.58853 * 293.81874 * 26 8 7 45 45 H 1.09000 * 109.69976 * 173.46368 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 8 1.5635 2.1165 -1.1660 5 6 2.0415 -0.7230 -1.2481 6 6 1.5043 -2.1559 -1.2658 7 6 2.0152 -2.9038 -0.0303 8 7 1.6521 -2.1380 1.1699 9 16 0.8205 -2.8557 2.4091 10 8 1.0767 -4.2499 2.3098 11 8 1.1028 -2.0947 3.5755 12 6 -0.8968 -2.6406 2.0782 13 6 -1.5824 -3.5929 1.3397 14 6 -2.9335 -3.4371 1.0722 15 6 -3.6096 -2.3322 1.5378 16 6 -2.9240 -1.3594 2.2882 17 6 -3.6079 -0.2200 2.7712 18 1 -3.2862 0.2555 3.6861 19 6 -4.7018 0.2916 2.0640 20 7 -5.5466 1.0951 2.6575 21 14 -4.9556 -0.1728 0.2726 22 1 -5.8983 -1.3171 0.1867 23 1 -5.5171 0.9874 -0.4649 24 1 -3.6534 -0.5580 -0.3283 25 6 -1.5535 -1.5310 2.5584 26 6 2.0413 -0.7235 1.2498 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6786 1.9559 0.8906 31 1 3.1308 1.4417 -0.0005 32 1 1.8495 3.0379 -1.2323 33 1 1.6995 -0.1960 -2.1388 34 1 3.1312 -0.7438 -1.2347 35 1 1.8498 -2.6629 -2.1668 36 1 0.4145 -2.1361 -1.2542 37 1 3.0992 -3.0037 -0.0860 38 1 1.5570 -3.8918 0.0141 39 1 -1.0598 -4.4627 0.9698 40 1 -3.4578 -4.1853 0.4963 41 1 -4.6621 -2.2125 1.3279 42 1 -6.3046 1.4499 2.1671 43 1 -1.0186 -0.7928 3.1376 44 1 3.1274 -0.6455 1.2985 45 1 1.6022 -0.2713 2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771685973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -135.023521 kcal Electronic energy + Delta-G solvation = -29523.936656 eV Core-core repulsion = 25631.631931 eV Total energy + Delta-G solvation = -3892.304725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51847 -39.67617 -38.39002 -37.39561 -36.96041 -35.64455 -34.15420 -32.73925 -32.53920 -31.89967 -28.06134 -27.25230 -26.84958 -25.51979 -24.07602 -22.94272 -22.63720 -20.52280 -19.69141 -19.30284 -18.57543 -18.25219 -18.08261 -17.08486 -17.02227 -16.57560 -16.12653 -15.85652 -15.61216 -15.38757 -15.27137 -14.92207 -14.71085 -14.67483 -14.20295 -14.04797 -13.73512 -13.62204 -13.46434 -13.40800 -13.20704 -13.14976 -13.03110 -12.87588 -12.66357 -12.59764 -12.30580 -12.02529 -12.00397 -11.85959 -11.71985 -11.52202 -11.30552 -11.13973 -11.06660 -10.73638 -10.03654 -9.86217 -9.67651 -8.97628 -6.59710 -0.59881 0.18742 0.65597 1.19098 1.33905 1.41233 1.94837 2.03833 2.42648 2.70943 3.22923 3.29112 3.48722 3.60364 3.84297 4.02383 4.16022 4.17987 4.27755 4.30987 4.32841 4.43230 4.45893 4.59787 4.64746 4.72702 4.73712 4.78179 4.81508 4.89786 4.93226 4.99999 5.06602 5.10301 5.17821 5.29763 5.33326 5.40623 5.43697 5.47186 5.59830 5.63017 5.67149 5.76152 5.98724 6.23987 6.58251 6.69389 7.00081 8.10635 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.005793 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.789713 B = 4832.420940 C = 6118.092694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C 0.088 3.912 4 O -0.585 6.585 5 C -0.092 4.092 6 C -0.139 4.139 7 C 0.115 3.885 8 N -0.986 5.986 9 S 2.705 3.295 10 O -0.978 6.978 11 O -0.990 6.990 12 C -0.632 4.632 13 C -0.140 4.140 14 C -0.095 4.095 15 C -0.206 4.206 16 C 0.059 3.941 17 C -0.481 4.481 18 H 0.059 0.941 19 C 0.051 3.949 20 N -0.843 5.843 21 Si 0.955 3.045 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.249 1.249 25 C -0.108 4.108 26 C 0.127 3.873 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.295 0.705 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.944 -2.082 -11.485 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 C 0.010 3.990 4 O -0.393 6.393 5 C -0.129 4.129 6 C -0.178 4.178 7 C -0.009 4.009 8 N -0.825 5.825 9 S 2.798 3.202 10 O -0.969 6.969 11 O -0.980 6.980 12 C -0.720 4.720 13 C -0.161 4.161 14 C -0.114 4.114 15 C -0.226 4.226 16 C 0.055 3.945 17 C -0.510 4.510 18 H 0.077 0.923 19 C -0.164 4.164 20 N -0.468 5.468 21 Si 0.778 3.222 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.172 1.172 25 C -0.129 4.129 26 C 0.001 3.999 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.838 -2.903 -10.799 19.388 hybrid contribution -1.457 1.214 -0.182 1.905 sum 14.382 -1.690 -10.981 18.173 Atomic orbital electron populations 1.21849 0.95415 1.01552 1.00761 1.20939 0.95304 0.94674 0.96632 1.22101 0.98242 0.91178 0.87520 1.86437 1.78150 1.30324 1.44413 1.21372 1.00984 0.94400 0.96170 1.22016 1.01026 0.96503 0.98238 1.21739 1.02374 0.94171 0.82592 1.57486 1.70044 1.20309 1.34692 1.01328 0.73331 0.72582 0.72925 1.93495 1.85117 1.31540 1.86704 1.93502 1.84739 1.72656 1.47131 1.30498 1.25000 1.03842 1.12681 1.20526 0.95100 0.98785 1.01665 1.21115 0.94697 0.96892 0.98700 1.21450 0.98995 0.96250 1.05890 1.17888 0.92035 0.92778 0.91760 1.19447 1.11129 1.11307 1.09143 0.92328 1.26762 0.92603 0.92932 1.04102 1.69712 1.10687 1.26561 1.39887 0.85634 0.80590 0.78253 0.77709 1.17955 1.20272 1.17199 1.20754 0.94061 0.96496 1.01624 1.21562 1.01937 0.78689 0.97672 0.93238 0.92771 0.94668 0.93842 0.90723 0.75632 0.91795 0.89782 0.88373 0.92883 0.88029 0.89312 0.84266 0.84199 0.87685 0.89417 0.87336 0.87424 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 7.64 71.98 0.55 -3.85 16 2 C -0.07 -1.69 0.60 -52.10 -0.03 -1.73 16 3 C 0.09 1.66 5.92 71.98 0.43 2.09 16 4 O -0.59 -11.72 12.29 -148.98 -1.83 -13.55 16 5 C -0.09 -1.73 4.59 30.62 0.14 -1.59 16 6 C -0.14 -2.65 5.74 30.67 0.18 -2.47 16 7 C 0.12 2.30 6.38 86.36 0.55 2.85 16 8 N -0.99 -25.73 2.73 -513.06 -1.40 -27.13 16 9 S 2.70 94.15 5.69 -56.49 -0.32 93.83 16 10 O -0.98 -35.63 15.98 -128.00 -2.05 -37.67 16 11 O -0.99 -39.63 15.98 -128.00 -2.05 -41.67 16 12 C -0.63 -25.30 5.04 22.22 0.11 -25.18 16 13 C -0.14 -5.28 9.53 22.46 0.21 -5.07 16 14 C -0.10 -3.70 10.02 22.22 0.22 -3.48 16 15 C -0.21 -9.42 7.18 22.73 0.16 -9.26 16 16 C 0.06 2.95 5.11 -21.29 -0.11 2.84 16 17 C -0.48 -26.64 9.57 23.46 0.22 -26.42 16 18 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 19 C 0.05 2.71 5.40 85.25 0.46 3.17 16 20 N -0.84 -45.57 13.93 21.82 0.30 -45.26 16 21 Si 0.96 41.46 24.52 68.60 1.68 43.14 16 22 H -0.25 -10.32 6.71 99.48 0.67 -9.66 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.25 -10.91 6.86 99.48 0.68 -10.23 16 25 C -0.11 -5.00 8.93 22.73 0.20 -4.79 16 26 C 0.13 2.95 5.05 86.36 0.44 3.38 16 27 H 0.05 1.62 7.68 -2.39 -0.02 1.61 16 28 H 0.05 1.83 4.91 -2.39 -0.01 1.82 16 29 H 0.03 1.25 8.12 -2.39 -0.02 1.23 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.39 4.29 9.12 -74.05 -0.68 3.61 16 33 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.28 6.34 -2.38 -0.02 1.26 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.83 7.12 -2.39 -0.02 1.81 16 39 H 0.14 4.43 7.60 -2.91 -0.02 4.41 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.11 4.73 4.73 -2.91 -0.01 4.72 16 42 H 0.30 14.30 8.30 -92.71 -0.77 13.54 16 43 H 0.11 5.03 7.60 -2.91 -0.02 5.01 16 44 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 2.08 7.13 -2.39 -0.02 2.07 16 Total: -1.00 -68.96 359.76 -1.64 -70.60 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.27 Total: 27.21 kcal Atomic # 6 Polarization: -73.24 SS G_CDS: 3.74 Total: -69.50 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.10 Total: -72.39 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -5.92 Total: -92.89 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.68 Total: 43.14 kcal Atomic # 16 Polarization: 94.15 SS G_CDS: -0.32 Total: 93.83 kcal Total: -68.96 -1.64 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771685973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.420 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds