Wall clock time and date at job start Sat Apr 11 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.49640 * 2 1 4 4 O 1.42902 * 109.47139 * 59.93278 * 3 2 1 5 5 C 1.53037 * 109.49468 * 120.09768 * 2 1 3 6 6 C 1.53040 * 109.54211 * 58.58549 * 5 2 1 7 7 C 1.53201 * 109.30840 * 61.36322 * 6 5 2 8 8 N 1.46927 * 108.77645 * 305.36627 * 7 6 5 9 9 S 1.65596 * 120.62792 * 233.62959 * 8 7 6 10 10 O 1.42102 * 106.40046 * 203.54094 * 9 8 7 11 11 O 1.42090 * 106.40559 * 336.46074 * 9 8 7 12 12 C 1.76205 * 107.21919 * 90.00433 * 9 8 7 13 13 C 1.38653 * 119.87183 * 269.72766 * 12 9 8 14 14 C 1.38623 * 120.50032 * 179.71940 * 13 12 9 15 15 C 1.37639 * 120.24439 * 0.54960 * 14 13 12 16 16 C 1.40696 * 119.74268 * 359.72729 * 15 14 13 17 17 C 1.41403 * 120.24229 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99976 * 204.36790 * 17 16 15 19 19 C 1.39945 * 119.99725 * 24.36523 * 17 16 15 20 20 N 1.30829 * 120.00299 * 17.86460 * 19 17 16 21 21 Si 1.86801 * 120.00091 * 197.86076 * 19 17 16 22 22 H 1.48507 * 109.46674 * 60.00134 * 21 19 17 23 23 H 1.48493 * 109.47212 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47168 * 300.00500 * 21 19 17 25 25 C 1.37599 * 119.87894 * 89.99357 * 12 9 8 26 26 C 1.46923 * 118.73638 * 53.60949 * 8 7 6 27 27 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47552 * 300.06401 * 1 2 3 29 29 H 1.09000 * 109.46808 * 60.06712 * 1 2 3 30 30 H 1.08996 * 109.46994 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47040 * 299.93387 * 3 2 1 32 32 H 0.96698 * 114.00017 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.45933 * 178.61044 * 5 2 1 34 34 H 1.09003 * 109.45967 * 298.57892 * 5 2 1 35 35 H 1.08995 * 109.50030 * 301.41712 * 6 5 2 36 36 H 1.08991 * 109.49925 * 181.31554 * 6 5 2 37 37 H 1.08999 * 109.58207 * 185.58204 * 7 6 5 38 38 H 1.09000 * 109.58104 * 65.15543 * 7 6 5 39 39 H 1.08003 * 119.75183 * 359.97438 * 13 12 9 40 40 H 1.07998 * 119.87643 * 180.25402 * 14 13 12 41 41 H 1.08001 * 120.12689 * 179.70270 * 15 14 13 42 42 H 0.96995 * 119.99913 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.12318 * 0.02562 * 25 12 9 44 44 H 1.08994 * 109.58948 * 66.17933 * 26 8 7 45 45 H 1.09004 * 109.58364 * 186.60140 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1166 1.1660 5 6 2.0407 -0.7234 1.2481 6 6 1.5029 -2.1561 1.2654 7 6 2.0140 -2.9040 0.0299 8 7 1.6515 -2.1378 -1.1702 9 16 0.8191 -2.8547 -2.4093 10 8 1.1017 -2.0937 -3.5756 11 8 1.0743 -4.2490 -2.3104 12 6 -0.8979 -2.6383 -2.0781 13 6 -1.5854 -3.5931 -1.3444 14 6 -2.9350 -3.4332 -1.0713 15 6 -3.6103 -2.3277 -1.5365 16 6 -2.9241 -1.3553 -2.2869 17 6 -3.6073 -0.2152 -2.7696 18 1 -3.2339 0.3118 -3.6351 19 6 -4.7672 0.2301 -2.1256 20 7 -5.0314 -0.1648 -0.9066 21 14 -5.9384 1.3885 -3.0065 22 1 -6.4418 0.7375 -4.2428 23 1 -7.0822 1.7081 -2.1151 24 1 -5.2226 2.6399 -3.3622 25 6 -1.5527 -1.5253 -2.5531 26 6 2.0413 -0.7235 -1.2497 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3633 0.5128 -0.8906 30 1 3.1306 1.4417 0.0005 31 1 1.6785 1.9559 -0.8906 32 1 1.8493 3.0379 1.2323 33 1 3.1305 -0.7447 1.2351 34 1 1.6985 -0.1965 2.1389 35 1 0.4132 -2.1359 1.2535 36 1 1.8480 -2.6634 2.1663 37 1 1.5553 -3.8918 -0.0149 38 1 3.0979 -3.0043 0.0860 39 1 -1.0645 -4.4660 -0.9795 40 1 -3.4596 -4.1811 -0.4954 41 1 -4.6628 -2.2074 -1.3266 42 1 -5.8352 0.1442 -0.4602 43 1 -1.0163 -0.7851 -3.1284 44 1 3.1274 -0.6459 -1.2981 45 1 1.6008 -0.2725 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771685975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:24 Heat of formation + Delta-G solvation = -115.101267 kcal Electronic energy + Delta-G solvation = -29357.642990 eV Core-core repulsion = 25466.202159 eV Total energy + Delta-G solvation = -3891.440831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.43754 -37.62689 -36.75760 -36.45138 -35.31156 -33.83595 -33.02015 -31.68972 -30.06321 -29.78920 -26.76784 -25.91606 -25.46313 -24.39264 -22.02361 -21.70855 -20.95860 -18.94736 -18.20224 -17.95828 -17.36922 -17.07426 -15.94298 -15.58314 -15.20153 -15.10810 -14.72912 -14.53320 -14.36429 -14.14491 -13.67677 -13.45992 -13.30123 -13.15308 -12.66043 -12.56881 -12.43897 -11.90410 -11.74332 -11.66654 -11.56814 -11.42279 -11.35632 -11.32987 -11.12520 -10.99461 -10.90762 -10.86059 -10.71301 -10.57698 -10.28647 -10.09523 -9.86027 -9.75921 -9.55544 -9.33191 -8.71164 -7.99631 -7.68240 -6.91552 -4.52165 0.98325 2.21536 2.65590 2.99542 3.01547 3.08735 3.44530 3.83077 4.21934 4.29644 4.42821 4.69632 4.82192 4.94132 5.01793 5.23645 5.25852 5.34840 5.42929 5.43336 5.48520 5.62440 5.75315 5.81098 5.83487 5.96392 6.05723 6.13755 6.18521 6.28182 6.29198 6.41758 6.56352 6.58067 6.65560 6.71005 6.78504 6.94056 6.96686 7.05939 7.23322 7.40063 7.64386 7.74600 7.81738 7.95669 8.41323 8.68353 8.73253 10.03583 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.005103 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.864212 B = 5485.251094 C = 6798.072699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C 0.088 3.912 4 O -0.566 6.566 5 C -0.097 4.097 6 C -0.141 4.141 7 C 0.124 3.876 8 N -0.995 5.995 9 S 2.684 3.316 10 O -0.971 6.971 11 O -0.974 6.974 12 C -0.629 4.629 13 C -0.147 4.147 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.095 3.905 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.077 3.923 20 N -0.792 5.792 21 Si 0.909 3.091 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.119 4.119 26 C 0.135 3.865 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.374 0.626 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.283 0.717 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 2.222 5.159 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C 0.009 3.991 4 O -0.370 6.370 5 C -0.134 4.134 6 C -0.179 4.179 7 C -0.001 4.001 8 N -0.831 5.831 9 S 2.782 3.218 10 O -0.961 6.961 11 O -0.964 6.964 12 C -0.722 4.722 13 C -0.168 4.168 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.091 3.909 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.141 4.141 20 N -0.417 5.417 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.141 4.141 26 C 0.009 3.991 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.015 1.228 4.732 12.051 hybrid contribution -1.037 1.399 0.051 1.742 sum 9.978 2.627 4.783 11.372 Atomic orbital electron populations 1.21876 0.91894 1.03322 1.02453 1.20949 0.98255 0.92672 0.95805 1.22117 0.96523 0.92713 0.87714 1.86505 1.77519 1.28547 1.44425 1.21396 0.99389 0.95039 0.97625 1.22012 1.02591 0.96032 0.97300 1.21377 1.00170 0.94630 0.83920 1.57713 1.71642 1.19299 1.34459 1.01867 0.74556 0.72798 0.72606 1.93512 1.85104 1.72225 1.45306 1.93497 1.85657 1.30969 1.86312 1.29762 1.22138 1.05273 1.14978 1.20034 0.95458 0.98162 1.03167 1.20788 0.94332 0.97980 1.00855 1.21621 0.99970 0.92392 0.99827 1.17632 0.90314 0.92327 0.90623 1.19563 1.07138 1.09981 1.12313 0.90084 1.25901 0.97831 0.96403 0.94011 1.69772 1.24283 1.37639 1.10028 0.86341 0.79452 0.80580 0.80289 1.18724 1.20270 1.18865 1.20686 0.94948 0.95785 1.02637 1.21306 0.99663 0.80023 0.98098 0.91155 0.92255 0.92337 0.93947 0.93314 0.77947 0.92571 0.91083 0.90352 0.91189 0.89263 0.91496 0.87832 0.88548 0.85864 0.90577 0.87397 0.91372 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.60 37.16 0.28 -2.04 16 2 C -0.08 -1.00 0.60 -154.39 -0.09 -1.09 16 3 C 0.09 0.99 5.92 37.16 0.22 1.21 16 4 O -0.57 -6.55 12.30 -35.23 -0.43 -6.98 16 5 C -0.10 -1.17 4.59 -26.69 -0.12 -1.29 16 6 C -0.14 -1.73 5.74 -26.61 -0.15 -1.88 16 7 C 0.12 1.62 6.38 -3.71 -0.02 1.59 16 8 N -1.00 -15.20 2.73 -113.52 -0.31 -15.51 16 9 S 2.68 51.29 5.69 -107.50 -0.61 50.68 16 10 O -0.97 -20.40 15.98 -57.18 -0.91 -21.32 16 11 O -0.97 -19.98 15.97 -57.18 -0.91 -20.89 16 12 C -0.63 -13.51 5.04 -39.66 -0.20 -13.71 16 13 C -0.15 -3.15 9.53 -39.29 -0.37 -3.52 16 14 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 15 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 16 C 0.09 2.38 5.58 -106.83 -0.60 1.78 16 17 C -0.46 -11.60 9.05 -37.74 -0.34 -11.95 16 18 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -19.34 10.95 55.55 0.61 -18.73 16 21 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 C -0.12 -2.77 8.84 -38.88 -0.34 -3.12 16 26 C 0.13 1.85 5.06 -3.71 -0.02 1.83 16 27 H 0.07 1.29 4.89 -51.93 -0.25 1.03 16 28 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 29 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.37 2.60 9.12 45.56 0.42 3.01 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.91 7.65 -51.93 -0.40 0.52 16 35 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.19 7.12 -51.93 -0.37 0.82 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 2.02 7.59 -52.48 -0.40 1.62 16 40 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 42 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 43 H 0.11 2.43 7.60 -52.48 -0.40 2.03 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.34 7.13 -51.93 -0.37 0.97 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -30.07 364.78 -10.45 -40.51 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.75 Total: 10.55 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: -2.59 Total: -36.75 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.30 Total: -34.24 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.26 Total: -49.19 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.61 Total: 50.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.07 -10.45 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771685975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.589 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds