Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.49640 * 2 1 4 4 O 1.42902 * 109.47139 * 59.93278 * 3 2 1 5 5 C 1.53037 * 109.49468 * 120.09768 * 2 1 3 6 6 C 1.53040 * 109.54211 * 58.58549 * 5 2 1 7 7 C 1.53201 * 109.30840 * 61.36322 * 6 5 2 8 8 N 1.46927 * 108.77645 * 305.36627 * 7 6 5 9 9 S 1.65596 * 120.62792 * 233.62959 * 8 7 6 10 10 O 1.42102 * 106.40046 * 203.54094 * 9 8 7 11 11 O 1.42090 * 106.40559 * 336.46074 * 9 8 7 12 12 C 1.76205 * 107.21919 * 90.00433 * 9 8 7 13 13 C 1.38653 * 119.87183 * 269.72766 * 12 9 8 14 14 C 1.38623 * 120.50032 * 179.71940 * 13 12 9 15 15 C 1.37639 * 120.24439 * 0.54960 * 14 13 12 16 16 C 1.40696 * 119.74268 * 359.72729 * 15 14 13 17 17 C 1.41403 * 120.24229 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99976 * 204.36790 * 17 16 15 19 19 C 1.39945 * 119.99725 * 24.36523 * 17 16 15 20 20 N 1.30829 * 120.00299 * 17.86460 * 19 17 16 21 21 Si 1.86801 * 120.00091 * 197.86076 * 19 17 16 22 22 H 1.48507 * 109.46674 * 60.00134 * 21 19 17 23 23 H 1.48493 * 109.47212 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47168 * 300.00500 * 21 19 17 25 25 C 1.37599 * 119.87894 * 89.99357 * 12 9 8 26 26 C 1.46923 * 118.73638 * 53.60949 * 8 7 6 27 27 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47552 * 300.06401 * 1 2 3 29 29 H 1.09000 * 109.46808 * 60.06712 * 1 2 3 30 30 H 1.08996 * 109.46994 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47040 * 299.93387 * 3 2 1 32 32 H 0.96698 * 114.00017 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.45933 * 178.61044 * 5 2 1 34 34 H 1.09003 * 109.45967 * 298.57892 * 5 2 1 35 35 H 1.08995 * 109.50030 * 301.41712 * 6 5 2 36 36 H 1.08991 * 109.49925 * 181.31554 * 6 5 2 37 37 H 1.08999 * 109.58207 * 185.58204 * 7 6 5 38 38 H 1.09000 * 109.58104 * 65.15543 * 7 6 5 39 39 H 1.08003 * 119.75183 * 359.97438 * 13 12 9 40 40 H 1.07998 * 119.87643 * 180.25402 * 14 13 12 41 41 H 1.08001 * 120.12689 * 179.70270 * 15 14 13 42 42 H 0.96995 * 119.99913 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.12318 * 0.02562 * 25 12 9 44 44 H 1.08994 * 109.58948 * 66.17933 * 26 8 7 45 45 H 1.09004 * 109.58364 * 186.60140 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1166 1.1660 5 6 2.0407 -0.7234 1.2481 6 6 1.5029 -2.1561 1.2654 7 6 2.0140 -2.9040 0.0299 8 7 1.6515 -2.1378 -1.1702 9 16 0.8191 -2.8547 -2.4093 10 8 1.1017 -2.0937 -3.5756 11 8 1.0743 -4.2490 -2.3104 12 6 -0.8979 -2.6383 -2.0781 13 6 -1.5854 -3.5931 -1.3444 14 6 -2.9350 -3.4332 -1.0713 15 6 -3.6103 -2.3277 -1.5365 16 6 -2.9241 -1.3553 -2.2869 17 6 -3.6073 -0.2152 -2.7696 18 1 -3.2339 0.3118 -3.6351 19 6 -4.7672 0.2301 -2.1256 20 7 -5.0314 -0.1648 -0.9066 21 14 -5.9384 1.3885 -3.0065 22 1 -6.4418 0.7375 -4.2428 23 1 -7.0822 1.7081 -2.1151 24 1 -5.2226 2.6399 -3.3622 25 6 -1.5527 -1.5253 -2.5531 26 6 2.0413 -0.7235 -1.2497 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3633 0.5128 -0.8906 30 1 3.1306 1.4417 0.0005 31 1 1.6785 1.9559 -0.8906 32 1 1.8493 3.0379 1.2323 33 1 3.1305 -0.7447 1.2351 34 1 1.6985 -0.1965 2.1389 35 1 0.4132 -2.1359 1.2535 36 1 1.8480 -2.6634 2.1663 37 1 1.5553 -3.8918 -0.0149 38 1 3.0979 -3.0043 0.0860 39 1 -1.0645 -4.4660 -0.9795 40 1 -3.4596 -4.1811 -0.4954 41 1 -4.6628 -2.2074 -1.3266 42 1 -5.8352 0.1442 -0.4602 43 1 -1.0163 -0.7851 -3.1284 44 1 3.1274 -0.6459 -1.2981 45 1 1.6008 -0.2725 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771685975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -135.571564 kcal Electronic energy + Delta-G solvation = -29358.530649 eV Core-core repulsion = 25466.202159 eV Total energy + Delta-G solvation = -3892.328490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50599 -39.42367 -38.35061 -37.39191 -36.92691 -35.65685 -34.14157 -32.73637 -31.89533 -31.58013 -28.03823 -27.33408 -26.84831 -25.50335 -23.63840 -22.94461 -22.71880 -20.41816 -19.62771 -19.28569 -18.55010 -18.24769 -17.73129 -17.05373 -16.80812 -16.47787 -16.11378 -15.72978 -15.52896 -15.31484 -15.17816 -15.07574 -14.71927 -14.29995 -14.18157 -13.78320 -13.69676 -13.47256 -13.30859 -13.18325 -13.12065 -13.05200 -12.99425 -12.80649 -12.64600 -12.60046 -12.29219 -12.24503 -12.01480 -11.78260 -11.54696 -11.36545 -11.20546 -11.13758 -11.12215 -10.73155 -9.96525 -9.74710 -9.52936 -8.72058 -6.43278 -0.53298 0.43574 0.87016 1.35472 1.44656 1.48084 2.03050 2.16370 2.57331 2.77032 3.26309 3.50169 3.53165 3.63320 3.85204 4.02641 4.19149 4.27054 4.30736 4.32578 4.44008 4.46395 4.59610 4.64672 4.73431 4.77442 4.84701 4.89273 4.90280 4.92017 5.01168 5.07208 5.11235 5.17679 5.21328 5.32065 5.42008 5.42616 5.47425 5.58288 5.61679 5.69177 5.90713 5.95033 6.11770 6.53958 6.81420 6.86700 7.01406 8.25174 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.005103 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.864212 B = 5485.251094 C = 6798.072699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C 0.089 3.911 4 O -0.586 6.586 5 C -0.091 4.091 6 C -0.139 4.139 7 C 0.116 3.884 8 N -0.987 5.987 9 S 2.707 3.293 10 O -0.991 6.991 11 O -0.984 6.984 12 C -0.636 4.636 13 C -0.147 4.147 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.068 3.932 17 C -0.497 4.497 18 H 0.076 0.924 19 C 0.041 3.959 20 N -0.819 5.819 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.130 4.130 26 C 0.128 3.872 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.290 0.710 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.305 2.319 6.069 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C 0.011 3.989 4 O -0.394 6.394 5 C -0.129 4.129 6 C -0.178 4.178 7 C -0.008 4.008 8 N -0.826 5.826 9 S 2.801 3.199 10 O -0.981 6.981 11 O -0.974 6.974 12 C -0.725 4.725 13 C -0.168 4.168 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.065 3.935 17 C -0.526 4.526 18 H 0.094 0.906 19 C -0.175 4.175 20 N -0.445 5.445 21 Si 0.798 3.202 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.151 4.151 26 C 0.003 3.997 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.244 0.756 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.267 1.328 5.652 14.482 hybrid contribution -1.636 1.324 -0.141 2.109 sum 11.631 2.653 5.511 13.141 Atomic orbital electron populations 1.21749 0.95281 1.01308 1.00324 1.20939 0.95225 0.94750 0.96583 1.22096 0.98249 0.91073 0.87515 1.86453 1.78159 1.30299 1.44454 1.21366 1.00991 0.94257 0.96236 1.22002 1.00829 0.96680 0.98242 1.21707 1.02298 0.94065 0.82710 1.57481 1.70214 1.20306 1.34581 1.01208 0.73388 0.72435 0.72885 1.93482 1.84890 1.72639 1.47125 1.93477 1.85333 1.31850 1.86777 1.30275 1.24430 1.04195 1.13564 1.20374 0.95285 0.98683 1.02436 1.21090 0.94920 0.97725 1.00427 1.21604 0.99680 0.93583 1.01324 1.17955 0.91358 0.92861 0.91342 1.19788 1.08928 1.10878 1.13049 0.90554 1.26670 0.98688 0.97768 0.94399 1.69817 1.24945 1.38673 1.11058 0.85314 0.77394 0.78409 0.79060 1.18615 1.18989 1.18393 1.20679 0.94488 0.96669 1.03231 1.21559 1.01859 0.78686 0.97619 0.93121 0.93744 0.94940 0.90601 0.93756 0.75646 0.89617 0.91913 0.93298 0.88461 0.89708 0.87899 0.85501 0.85960 0.87149 0.89881 0.87801 0.87348 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.60 71.98 0.55 -3.95 16 2 C -0.07 -1.83 0.60 -52.11 -0.03 -1.87 16 3 C 0.09 1.80 5.92 71.98 0.43 2.23 16 4 O -0.59 -12.59 12.30 -148.98 -1.83 -14.42 16 5 C -0.09 -1.93 4.59 30.62 0.14 -1.79 16 6 C -0.14 -3.07 5.74 30.68 0.18 -2.90 16 7 C 0.12 2.66 6.38 86.37 0.55 3.21 16 8 N -0.99 -28.28 2.73 -513.06 -1.40 -29.68 16 9 S 2.71 101.58 5.69 -56.49 -0.32 101.26 16 10 O -0.99 -41.46 15.98 -128.00 -2.05 -43.51 16 11 O -0.98 -38.89 15.97 -128.00 -2.04 -40.93 16 12 C -0.64 -27.77 5.04 22.22 0.11 -27.66 16 13 C -0.15 -6.31 9.53 22.46 0.21 -6.09 16 14 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 15 C -0.14 -7.28 8.70 22.73 0.20 -7.08 16 16 C 0.07 3.61 5.58 -21.29 -0.12 3.49 16 17 C -0.50 -26.40 9.05 23.46 0.21 -26.19 16 18 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 19 C 0.04 2.00 5.14 85.26 0.44 2.43 16 20 N -0.82 -41.48 10.95 21.83 0.24 -41.24 16 21 Si 0.98 37.59 29.60 68.60 2.03 39.62 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 C -0.13 -6.32 8.84 22.73 0.20 -6.12 16 26 C 0.13 3.22 5.06 86.36 0.44 3.66 16 27 H 0.05 1.93 4.89 -2.38 -0.01 1.92 16 28 H 0.04 1.62 7.68 -2.39 -0.02 1.60 16 29 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.39 4.70 9.12 -74.06 -0.68 4.02 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 35 H 0.05 1.38 6.33 -2.39 -0.02 1.36 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.04 7.12 -2.39 -0.02 2.03 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.13 4.79 7.59 -2.91 -0.02 4.77 16 40 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 41 H 0.11 5.84 6.16 -2.91 -0.02 5.82 16 42 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 43 H 0.10 4.99 7.60 -2.91 -0.02 4.97 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 2.20 7.13 -2.39 -0.02 2.19 16 Total: -1.00 -67.57 364.78 -1.31 -68.89 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.33 Total: 33.92 kcal Atomic # 6 Polarization: -77.64 SS G_CDS: 3.73 Total: -73.91 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.16 Total: -70.91 kcal Atomic # 8 Polarization: -92.94 SS G_CDS: -5.92 Total: -98.86 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 16 Polarization: 101.58 SS G_CDS: -0.32 Total: 101.26 kcal Total: -67.57 -1.31 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771685975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.685 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds