Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.52494 * 2 1 4 4 C 1.53038 * 109.49629 * 120.07997 * 2 1 3 5 5 C 1.53041 * 109.53599 * 181.31407 * 4 2 1 6 6 H 1.08993 * 109.52806 * 58.60294 * 5 4 2 7 7 O 1.42909 * 109.49617 * 178.68705 * 5 4 2 8 8 C 1.53194 * 109.31244 * 298.63502 * 5 4 2 9 9 N 1.46919 * 108.77730 * 54.63551 * 8 5 4 10 10 S 1.65595 * 120.63124 * 126.36578 * 9 8 5 11 11 O 1.42100 * 106.40382 * 336.46529 * 10 9 8 12 12 O 1.42098 * 106.40321 * 203.54071 * 10 9 8 13 13 C 1.76204 * 107.21912 * 90.00342 * 10 9 8 14 14 C 1.38638 * 119.75117 * 89.99965 * 13 10 9 15 15 C 1.37613 * 120.24807 * 179.97438 * 14 13 10 16 16 C 1.40709 * 119.74697 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24578 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00010 * 335.72332 * 17 16 15 19 19 C 1.39946 * 119.99947 * 155.72470 * 17 16 15 20 20 N 1.30821 * 120.00035 * 342.29492 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 162.30304 * 19 17 16 22 22 H 1.48496 * 109.47266 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46900 * 299.99576 * 21 19 17 24 24 H 1.48504 * 109.47251 * 59.99432 * 21 19 17 25 25 C 1.40719 * 119.51207 * 0.28087 * 16 15 14 26 26 C 1.37621 * 119.74279 * 359.40153 * 25 16 15 27 27 C 1.46926 * 118.73770 * 306.64445 * 9 8 5 28 28 H 1.09000 * 109.46930 * 299.91943 * 1 2 3 29 29 H 1.09000 * 109.46874 * 59.91680 * 1 2 3 30 30 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46849 * 180.08540 * 3 2 1 32 32 H 1.09004 * 109.46835 * 300.07754 * 3 2 1 33 33 H 1.08994 * 109.47542 * 60.08194 * 3 2 1 34 34 H 1.09004 * 109.46110 * 61.29919 * 4 2 1 35 35 H 1.08995 * 109.45097 * 301.33328 * 4 2 1 36 36 H 0.96700 * 113.99724 * 179.83978 * 7 5 4 37 37 H 1.09009 * 109.58875 * 294.84534 * 8 5 4 38 38 H 1.09000 * 109.58716 * 174.42817 * 8 5 4 39 39 H 1.07997 * 119.87117 * 359.97438 * 14 13 10 40 40 H 1.08009 * 120.12478 * 180.02562 * 15 14 13 41 41 H 0.97004 * 120.00360 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.12475 * 179.72303 * 25 16 15 43 43 H 1.07995 * 119.87237 * 180.32011 * 26 25 16 44 44 H 1.09002 * 109.58733 * 173.14065 * 27 9 8 45 45 H 1.09001 * 109.58880 * 293.56409 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5709 -0.6950 1.2660 6 1 3.9165 0.3386 1.2543 7 8 4.0462 -1.3437 2.4473 8 6 4.1052 -1.4268 0.0307 9 7 3.5046 -0.8293 -1.1696 10 16 4.4587 -0.2843 -2.4085 11 8 5.7325 -0.0082 -1.8424 12 8 3.6922 0.6862 -3.1083 13 6 4.6899 -1.6317 -3.5203 14 6 3.7976 -1.8233 -4.5639 15 6 3.9687 -2.8719 -5.4385 16 6 5.0540 -3.7515 -5.2701 17 6 5.2401 -4.8321 -6.1629 18 1 4.3990 -5.2315 -6.7102 19 6 6.5143 -5.3841 -6.3374 20 7 7.5742 -4.7133 -5.9659 21 14 6.7015 -7.0786 -7.1009 22 1 8.1420 -7.4317 -7.1750 23 1 5.9884 -8.0789 -6.2667 24 1 6.1230 -7.0719 -8.4686 25 6 5.9496 -3.5511 -4.2034 26 6 5.7628 -2.4920 -3.3448 27 6 2.0416 -0.7188 -1.2471 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1315 1.4409 -0.0015 32 1 1.6774 1.9565 -0.8893 33 1 1.6798 1.9558 0.8906 34 1 1.6967 -1.7573 1.2353 35 1 1.6581 -0.2243 2.1388 36 1 5.0100 -1.3652 2.5234 37 1 3.8375 -2.4820 0.0867 38 1 5.1895 -1.3248 -0.0138 39 1 2.9652 -1.1471 -4.6909 40 1 3.2726 -3.0191 -6.2512 41 1 8.4573 -5.0960 -6.0864 42 1 6.7834 -4.2229 -4.0622 43 1 6.4518 -2.3332 -2.5285 44 1 1.7646 -0.1497 -2.1346 45 1 1.6020 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771834996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -122.429733 kcal Electronic energy + Delta-G solvation = -28421.174607 eV Core-core repulsion = 24529.415990 eV Total energy + Delta-G solvation = -3891.758617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.69548 -37.59639 -36.74508 -36.27159 -35.18835 -34.07267 -33.97522 -30.32818 -30.26233 -29.49542 -27.39525 -26.91638 -25.84276 -24.49571 -21.97143 -21.50822 -21.14917 -19.04927 -18.33261 -17.65448 -17.38981 -17.14024 -16.57654 -15.86441 -15.51789 -15.10186 -14.58783 -14.44014 -14.18454 -14.06132 -13.77027 -13.44471 -13.27084 -13.16136 -12.46853 -12.30936 -12.27940 -12.26265 -12.18731 -11.78291 -11.75405 -11.69941 -11.57362 -11.47519 -11.35146 -11.28350 -11.26089 -10.90736 -10.89877 -10.65072 -10.47961 -10.30429 -10.15415 -9.77909 -9.63255 -9.49873 -8.66713 -7.97907 -7.73434 -7.16120 -4.82585 1.12189 2.23417 2.86072 2.87622 2.89666 2.92528 3.49629 3.64439 4.04235 4.22690 4.45650 4.60524 4.67775 4.80496 4.86166 5.07307 5.11681 5.23701 5.26416 5.39059 5.43183 5.55650 5.61053 5.72624 5.77748 5.82385 5.86346 5.91636 5.99837 6.03128 6.05942 6.08022 6.13423 6.31006 6.36769 6.61598 6.66018 6.75944 6.95250 7.02545 7.30981 7.39732 7.54075 7.60350 7.74045 7.94165 8.29036 8.48585 8.62402 9.75302 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003176 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.940305 B = 8814.621713 C = 9037.545225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.147 4.147 4 C -0.097 4.097 5 C 0.091 3.909 6 H 0.063 0.937 7 O -0.567 6.567 8 C 0.091 3.909 9 N -0.998 5.998 10 S 2.690 3.310 11 O -0.982 6.982 12 O -0.979 6.979 13 C -0.788 4.788 14 C 0.002 3.998 15 C -0.239 4.239 16 C 0.140 3.860 17 C -0.435 4.435 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.259 1.259 24 H -0.261 1.261 25 C -0.183 4.183 26 C -0.016 4.016 27 C 0.128 3.872 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.380 0.620 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.290 0.710 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 3.684 10.907 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.204 4.204 4 C -0.134 4.134 5 C 0.031 3.969 6 H 0.081 0.919 7 O -0.372 6.372 8 C -0.035 4.035 9 N -0.834 5.834 10 S 2.791 3.209 11 O -0.973 6.973 12 O -0.970 6.970 13 C -0.884 4.884 14 C -0.018 4.018 15 C -0.259 4.259 16 C 0.136 3.864 17 C -0.463 4.463 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.741 3.259 22 H -0.199 1.199 23 H -0.183 1.183 24 H -0.185 1.185 25 C -0.203 4.203 26 C -0.036 4.036 27 C 0.002 3.998 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.227 0.773 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.876 4.501 10.983 14.245 hybrid contribution 0.835 -1.410 -0.815 1.830 sum -7.041 3.091 10.168 12.748 Atomic orbital electron populations 1.21795 0.93422 1.02173 1.02227 1.20782 0.95860 0.96025 0.94946 1.21959 1.01391 0.94947 1.02102 1.21469 0.93041 1.01457 0.97481 1.22202 0.95333 0.95491 0.83866 0.91931 1.86484 1.27032 1.81403 1.42240 1.22051 0.98827 0.98094 0.84538 1.57861 1.15874 1.78177 1.31510 1.01375 0.72225 0.74703 0.72597 1.93467 1.40453 1.84795 1.78572 1.93468 1.71814 1.58656 1.73070 1.29181 1.11564 1.27480 1.20221 1.20143 0.94666 0.94976 0.92053 1.21021 1.03455 0.98826 1.02618 1.17846 0.89593 0.89366 0.89587 1.19923 0.94598 1.12016 1.19727 0.89440 1.26148 0.95328 0.99434 0.94130 1.69814 0.99898 1.36318 1.32638 0.86184 0.78418 0.80902 0.80378 1.19869 1.18345 1.18531 1.21340 1.02816 0.99846 0.96311 1.20229 0.93223 0.92997 0.97163 1.21412 0.79256 1.00709 0.98407 0.92322 0.91971 0.92263 0.92616 0.91796 0.92542 0.90989 0.91233 0.77276 0.90721 0.88896 0.87879 0.88162 0.89843 0.85991 0.88048 0.88623 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.48 37.16 0.32 -0.89 16 2 C -0.07 -0.81 0.77 -154.61 -0.12 -0.93 16 3 C -0.15 -1.67 7.98 37.16 0.30 -1.37 16 4 C -0.10 -1.05 4.36 -26.69 -0.12 -1.17 16 5 C 0.09 1.07 3.28 -26.61 -0.09 0.99 16 6 H 0.06 0.74 6.34 -51.93 -0.33 0.42 16 7 O -0.57 -6.30 13.32 -35.23 -0.47 -6.77 16 8 C 0.09 1.22 6.10 -3.71 -0.02 1.20 16 9 N -1.00 -15.09 2.73 -113.77 -0.31 -15.40 16 10 S 2.69 51.82 5.72 -107.50 -0.62 51.20 16 11 O -0.98 -20.75 15.85 -57.17 -0.91 -21.65 16 12 O -0.98 -20.24 15.84 -57.17 -0.91 -21.14 16 13 C -0.79 -17.38 6.00 -39.29 -0.24 -17.61 16 14 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 15 C -0.24 -5.62 9.80 -38.88 -0.38 -6.00 16 16 C 0.14 3.53 5.57 -106.82 -0.60 2.93 16 17 C -0.44 -10.62 9.05 -37.74 -0.34 -10.96 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 20 N -0.76 -18.26 10.95 55.55 0.61 -17.65 16 21 Si 0.92 16.88 29.59 -169.99 -5.03 11.85 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 25 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 26 C -0.02 -0.37 9.49 -39.66 -0.38 -0.74 16 27 C 0.13 1.66 5.11 -3.93 -0.02 1.64 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.38 2.82 9.08 45.56 0.41 3.23 16 37 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 39 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 40 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.29 6.22 8.30 -40.82 -0.34 5.89 16 42 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 43 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 44 H 0.10 1.30 6.91 -51.93 -0.36 0.94 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -29.89 368.78 -10.40 -40.29 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.84 Total: 10.29 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: -2.49 Total: -36.58 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.30 Total: -33.05 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.28 Total: -49.56 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.62 Total: 51.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.89 -10.40 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771834996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.136 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds