Wall clock time and date at job start Sat Apr 11 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.52494 * 2 1 4 4 C 1.53038 * 109.49629 * 120.07997 * 2 1 3 5 5 C 1.53041 * 109.53599 * 181.31407 * 4 2 1 6 6 H 1.08993 * 109.52806 * 58.60294 * 5 4 2 7 7 O 1.42909 * 109.49617 * 178.68705 * 5 4 2 8 8 C 1.53194 * 109.31244 * 298.63502 * 5 4 2 9 9 N 1.46919 * 108.77730 * 54.63551 * 8 5 4 10 10 S 1.65595 * 120.63124 * 126.36578 * 9 8 5 11 11 O 1.42100 * 106.40382 * 336.46529 * 10 9 8 12 12 O 1.42098 * 106.40321 * 203.54071 * 10 9 8 13 13 C 1.76204 * 107.21912 * 90.00342 * 10 9 8 14 14 C 1.38638 * 119.75117 * 89.99965 * 13 10 9 15 15 C 1.37613 * 120.24807 * 179.97438 * 14 13 10 16 16 C 1.40709 * 119.74697 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24578 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00010 * 335.72332 * 17 16 15 19 19 C 1.39946 * 119.99947 * 155.72470 * 17 16 15 20 20 N 1.30821 * 120.00035 * 342.29492 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 162.30304 * 19 17 16 22 22 H 1.48496 * 109.47266 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46900 * 299.99576 * 21 19 17 24 24 H 1.48504 * 109.47251 * 59.99432 * 21 19 17 25 25 C 1.40719 * 119.51207 * 0.28087 * 16 15 14 26 26 C 1.37621 * 119.74279 * 359.40153 * 25 16 15 27 27 C 1.46926 * 118.73770 * 306.64445 * 9 8 5 28 28 H 1.09000 * 109.46930 * 299.91943 * 1 2 3 29 29 H 1.09000 * 109.46874 * 59.91680 * 1 2 3 30 30 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46849 * 180.08540 * 3 2 1 32 32 H 1.09004 * 109.46835 * 300.07754 * 3 2 1 33 33 H 1.08994 * 109.47542 * 60.08194 * 3 2 1 34 34 H 1.09004 * 109.46110 * 61.29919 * 4 2 1 35 35 H 1.08995 * 109.45097 * 301.33328 * 4 2 1 36 36 H 0.96700 * 113.99724 * 179.83978 * 7 5 4 37 37 H 1.09009 * 109.58875 * 294.84534 * 8 5 4 38 38 H 1.09000 * 109.58716 * 174.42817 * 8 5 4 39 39 H 1.07997 * 119.87117 * 359.97438 * 14 13 10 40 40 H 1.08009 * 120.12478 * 180.02562 * 15 14 13 41 41 H 0.97004 * 120.00360 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.12475 * 179.72303 * 25 16 15 43 43 H 1.07995 * 119.87237 * 180.32011 * 26 25 16 44 44 H 1.09002 * 109.58733 * 173.14065 * 27 9 8 45 45 H 1.09001 * 109.58880 * 293.56409 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5709 -0.6950 1.2660 6 1 3.9165 0.3386 1.2543 7 8 4.0462 -1.3437 2.4473 8 6 4.1052 -1.4268 0.0307 9 7 3.5046 -0.8293 -1.1696 10 16 4.4587 -0.2843 -2.4085 11 8 5.7325 -0.0082 -1.8424 12 8 3.6922 0.6862 -3.1083 13 6 4.6899 -1.6317 -3.5203 14 6 3.7976 -1.8233 -4.5639 15 6 3.9687 -2.8719 -5.4385 16 6 5.0540 -3.7515 -5.2701 17 6 5.2401 -4.8321 -6.1629 18 1 4.3990 -5.2315 -6.7102 19 6 6.5143 -5.3841 -6.3374 20 7 7.5742 -4.7133 -5.9659 21 14 6.7015 -7.0786 -7.1009 22 1 8.1420 -7.4317 -7.1750 23 1 5.9884 -8.0789 -6.2667 24 1 6.1230 -7.0719 -8.4686 25 6 5.9496 -3.5511 -4.2034 26 6 5.7628 -2.4920 -3.3448 27 6 2.0416 -0.7188 -1.2471 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1315 1.4409 -0.0015 32 1 1.6774 1.9565 -0.8893 33 1 1.6798 1.9558 0.8906 34 1 1.6967 -1.7573 1.2353 35 1 1.6581 -0.2243 2.1388 36 1 5.0100 -1.3652 2.5234 37 1 3.8375 -2.4820 0.0867 38 1 5.1895 -1.3248 -0.0138 39 1 2.9652 -1.1471 -4.6909 40 1 3.2726 -3.0191 -6.2512 41 1 8.4573 -5.0960 -6.0864 42 1 6.7834 -4.2229 -4.0622 43 1 6.4518 -2.3332 -2.5285 44 1 1.7646 -0.1497 -2.1346 45 1 1.6020 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771834996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:31 Heat of formation + Delta-G solvation = -142.345544 kcal Electronic energy + Delta-G solvation = -28422.038221 eV Core-core repulsion = 24529.415990 eV Total energy + Delta-G solvation = -3892.622232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65404 -39.40207 -38.29755 -37.23992 -36.83257 -35.82768 -35.05600 -32.09267 -31.34064 -31.23898 -28.21832 -27.81585 -27.63548 -25.59533 -23.29943 -23.04894 -22.81949 -20.25721 -19.52438 -19.44824 -18.75775 -18.26199 -18.03677 -17.27792 -17.04699 -16.10681 -15.94355 -15.82800 -15.42177 -15.19102 -15.02319 -14.98896 -14.73919 -14.19286 -14.12136 -14.00344 -13.55547 -13.43128 -13.24573 -13.21625 -13.09549 -12.98672 -12.90569 -12.85581 -12.72343 -12.57467 -12.55997 -12.35596 -12.04222 -11.80572 -11.57646 -11.54528 -11.40538 -11.30876 -11.20702 -11.01798 -9.91524 -9.74800 -9.57935 -8.88803 -6.67191 -0.41904 0.46271 1.02916 1.34890 1.43350 1.49695 2.07845 2.11995 2.50588 2.86933 3.18420 3.42200 3.50229 3.74092 3.77695 3.89942 3.97181 4.17423 4.24765 4.26066 4.29573 4.33132 4.53944 4.68411 4.77811 4.80845 4.83983 4.89688 4.91385 4.92690 5.00668 5.05187 5.07245 5.16672 5.18553 5.21560 5.30446 5.45593 5.46420 5.49918 5.56594 5.63178 5.75744 5.91158 6.12992 6.46463 6.65909 6.78709 6.82512 8.06217 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003176 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.940305 B = 8814.621713 C = 9037.545225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.150 4.150 4 C -0.095 4.095 5 C 0.097 3.903 6 H 0.062 0.938 7 O -0.573 6.573 8 C 0.085 3.915 9 N -0.990 5.990 10 S 2.717 3.283 11 O -1.001 7.001 12 O -0.992 6.992 13 C -0.800 4.800 14 C -0.002 4.002 15 C -0.256 4.256 16 C 0.111 3.889 17 C -0.466 4.466 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.799 5.799 21 Si 0.993 3.007 22 H -0.265 1.265 23 H -0.255 1.255 24 H -0.255 1.255 25 C -0.207 4.207 26 C -0.022 4.022 27 C 0.117 3.883 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.395 0.605 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.299 0.701 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 3.431 12.003 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.132 4.132 5 C 0.036 3.964 6 H 0.080 0.920 7 O -0.380 6.380 8 C -0.040 4.040 9 N -0.828 5.828 10 S 2.815 3.185 11 O -0.992 6.992 12 O -0.983 6.983 13 C -0.893 4.893 14 C -0.022 4.022 15 C -0.277 4.277 16 C 0.108 3.892 17 C -0.493 4.493 18 H 0.112 0.888 19 C -0.186 4.186 20 N -0.422 5.422 21 Si 0.812 3.188 22 H -0.189 1.189 23 H -0.179 1.179 24 H -0.178 1.178 25 C -0.227 4.227 26 C -0.042 4.042 27 C -0.008 4.008 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.245 0.755 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.217 4.238 12.054 15.755 hybrid contribution 1.232 -1.218 -1.035 2.018 sum -7.985 3.020 11.019 13.939 Atomic orbital electron populations 1.21784 0.91420 1.02993 1.03090 1.20763 0.97325 0.95270 0.93702 1.22002 1.00334 0.95538 1.02863 1.21481 0.92212 1.01721 0.97828 1.22118 0.96061 0.95071 0.83117 0.92032 1.86461 1.28679 1.81281 1.41583 1.22258 0.98652 0.98643 0.84490 1.57492 1.16655 1.78084 1.30593 1.00575 0.71915 0.73635 0.72413 1.93436 1.42173 1.84855 1.78738 1.93444 1.71973 1.58825 1.74012 1.29728 1.10837 1.27538 1.21220 1.20446 0.95251 0.94867 0.91598 1.21269 1.03619 0.99246 1.03530 1.18204 0.90436 0.90384 0.90215 1.20237 0.95758 1.12802 1.20478 0.88813 1.27055 0.94361 1.03010 0.94133 1.69856 1.00669 1.38135 1.33493 0.85070 0.78729 0.75504 0.79475 1.18919 1.17937 1.17844 1.21364 1.03174 1.00862 0.97330 1.20431 0.93816 0.92806 0.97132 1.21726 0.77622 1.01841 0.99601 0.90873 0.91758 0.91497 0.94296 0.92348 0.90554 0.90795 0.90011 0.75537 0.90130 0.89444 0.85606 0.86906 0.89000 0.87124 0.86924 0.89211 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.48 71.98 0.61 -1.34 16 2 C -0.07 -1.33 0.77 -52.25 -0.04 -1.37 16 3 C -0.15 -3.11 7.98 71.98 0.57 -2.54 16 4 C -0.09 -1.80 4.36 30.62 0.13 -1.67 16 5 C 0.10 2.09 3.28 30.67 0.10 2.19 16 6 H 0.06 1.36 6.34 -2.39 -0.02 1.34 16 7 O -0.57 -11.50 13.32 -148.98 -1.98 -13.48 16 8 C 0.09 2.18 6.10 86.36 0.53 2.70 16 9 N -0.99 -28.85 2.73 -513.84 -1.41 -30.25 16 10 S 2.72 103.53 5.72 -56.49 -0.32 103.21 16 11 O -1.00 -42.14 15.85 -128.00 -2.03 -44.17 16 12 O -0.99 -40.30 15.84 -128.00 -2.03 -42.33 16 13 C -0.80 -35.51 6.00 22.46 0.13 -35.37 16 14 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 15 C -0.26 -12.28 9.80 22.73 0.22 -12.06 16 16 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 17 C -0.47 -23.28 9.05 23.46 0.21 -23.06 16 18 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 19 C 0.03 1.57 5.14 85.26 0.44 2.01 16 20 N -0.80 -39.07 10.95 21.83 0.24 -38.83 16 21 Si 0.99 34.39 29.59 68.60 2.03 36.42 16 22 H -0.27 -8.69 7.11 99.48 0.71 -7.99 16 23 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 25 C -0.21 -10.71 8.70 22.73 0.20 -10.52 16 26 C -0.02 -1.04 9.49 22.22 0.21 -0.83 16 27 C 0.12 2.84 5.11 86.22 0.44 3.28 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.93 5.97 -2.38 -0.01 0.91 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.39 5.13 9.08 -74.06 -0.67 4.46 16 37 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.09 2.32 6.92 -2.39 -0.02 2.30 16 39 H 0.13 4.91 7.60 -2.91 -0.02 4.88 16 40 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.30 13.02 8.30 -92.71 -0.77 12.25 16 42 H 0.11 5.84 6.16 -2.91 -0.02 5.83 16 43 H 0.11 4.93 7.60 -2.91 -0.02 4.91 16 44 H 0.09 2.30 6.91 -2.39 -0.02 2.29 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.59 368.78 -1.31 -65.90 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.33 Total: 36.30 kcal Atomic # 6 Polarization: -76.62 SS G_CDS: 3.86 Total: -72.77 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.17 Total: -69.08 kcal Atomic # 8 Polarization: -93.94 SS G_CDS: -6.04 Total: -99.98 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Atomic # 16 Polarization: 103.53 SS G_CDS: -0.32 Total: 103.21 kcal Total: -64.59 -1.31 -65.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771834996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.444 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds