Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.52508 * 2 1 4 4 C 1.53040 * 109.49624 * 120.08376 * 2 1 3 5 5 C 1.53033 * 109.54259 * 58.58260 * 4 2 1 6 6 H 1.09001 * 109.52659 * 301.40430 * 5 4 2 7 7 O 1.42899 * 109.50229 * 181.31620 * 5 4 2 8 8 C 1.53197 * 109.31149 * 61.36700 * 5 4 2 9 9 N 1.46928 * 108.77323 * 305.36714 * 8 5 4 10 10 S 1.65603 * 120.62854 * 233.58477 * 9 8 5 11 11 O 1.42099 * 106.40467 * 336.46026 * 10 9 8 12 12 O 1.42097 * 106.40296 * 203.53735 * 10 9 8 13 13 C 1.76201 * 107.21719 * 90.00183 * 10 9 8 14 14 C 1.38635 * 119.75350 * 90.00136 * 13 10 9 15 15 C 1.37611 * 120.25212 * 179.97438 * 14 13 10 16 16 C 1.40717 * 119.74429 * 359.97438 * 15 14 13 17 17 C 1.41393 * 120.24544 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 334.84990 * 17 16 15 19 19 C 1.39947 * 120.00447 * 154.85088 * 17 16 15 20 20 N 1.30829 * 119.99580 * 334.27844 * 19 17 16 21 21 Si 1.86794 * 120.00413 * 154.27772 * 19 17 16 22 22 H 1.48504 * 109.47556 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.47307 * 60.00117 * 21 19 17 24 24 H 1.48499 * 109.47060 * 300.00218 * 21 19 17 25 25 C 1.40717 * 119.51251 * 0.27207 * 16 15 14 26 26 C 1.37622 * 119.74258 * 359.45159 * 25 16 15 27 27 C 1.46916 * 118.74031 * 53.85856 * 9 8 5 28 28 H 1.09001 * 109.47040 * 299.91790 * 1 2 3 29 29 H 1.08998 * 109.46443 * 59.91789 * 1 2 3 30 30 H 1.08997 * 109.47028 * 179.91625 * 1 2 3 31 31 H 1.09000 * 109.47203 * 180.08164 * 3 2 1 32 32 H 1.08995 * 109.46895 * 300.08258 * 3 2 1 33 33 H 1.09000 * 109.46741 * 60.08068 * 3 2 1 34 34 H 1.09010 * 109.45773 * 298.56074 * 4 2 1 35 35 H 1.09000 * 109.44951 * 178.60543 * 4 2 1 36 36 H 0.96696 * 114.00437 * 180.16269 * 7 5 4 37 37 H 1.08998 * 109.58856 * 185.58028 * 8 5 4 38 38 H 1.08993 * 109.70185 * 65.21892 * 8 5 4 39 39 H 1.07996 * 119.87152 * 359.95128 * 14 13 10 40 40 H 1.08001 * 120.13153 * 180.02562 * 15 14 13 41 41 H 0.96996 * 120.00212 * 354.29995 * 20 19 17 42 42 H 1.07998 * 120.12873 * 179.72603 * 25 16 15 43 43 H 1.07997 * 119.87625 * 180.27232 * 26 25 16 44 44 H 1.09002 * 109.59021 * 65.92796 * 27 9 8 45 45 H 1.09003 * 109.58968 * 186.35296 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2660 6 1 0.4133 -2.1360 1.2543 7 8 1.9554 -2.8206 2.4473 8 6 2.0141 -2.9041 0.0308 9 7 1.6516 -2.1382 -1.1696 10 16 0.8200 -2.8556 -2.4090 11 8 1.0760 -4.2498 -2.3099 12 8 1.1026 -2.0946 -3.5752 13 6 -0.8972 -2.6403 -2.0784 14 6 -1.5549 -1.5183 -2.5587 15 6 -2.8960 -1.3401 -2.3069 16 6 -3.6000 -2.3022 -1.5594 17 6 -4.9782 -2.1300 -1.2949 18 1 -5.4069 -1.1388 -1.2876 19 6 -5.7870 -3.2439 -1.0427 20 7 -5.4535 -4.4157 -1.5196 21 14 -7.3424 -3.0578 -0.0252 22 1 -8.0154 -4.3760 0.0960 23 1 -8.2562 -2.0942 -0.6897 24 1 -6.9918 -2.5553 1.3275 25 6 -2.9210 -3.4345 -1.0724 26 6 -1.5808 -3.5949 -1.3412 27 6 2.0463 -0.7254 -1.2520 28 1 -0.3633 0.5126 0.8907 29 1 -0.3632 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1314 1.4410 -0.0015 32 1 1.6774 1.9566 -0.8892 33 1 1.6797 1.9557 0.8907 34 1 1.6988 -0.1958 2.1389 35 1 3.1306 -0.7444 1.2351 36 1 1.6536 -3.7361 2.5235 37 1 1.5554 -3.8919 -0.0137 38 1 3.0978 -3.0064 0.0854 39 1 -1.0126 -0.7813 -3.1322 40 1 -3.4065 -0.4655 -2.6824 41 1 -4.6928 -4.4982 -2.1156 42 1 -3.4505 -4.1769 -0.4938 43 1 -1.0586 -4.4652 -0.9723 44 1 3.1328 -0.6516 -1.2985 45 1 1.6089 -0.2752 -2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771834997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -128.099057 kcal Electronic energy + Delta-G solvation = -29204.524348 eV Core-core repulsion = 25312.519890 eV Total energy + Delta-G solvation = -3892.004458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.63470 -37.87625 -36.78107 -36.23886 -35.26402 -34.30513 -33.96638 -30.28363 -30.18183 -29.56718 -27.18826 -26.89279 -25.69460 -24.49643 -21.95110 -21.56910 -21.38025 -18.98475 -18.36751 -18.27427 -17.43136 -17.10046 -16.67140 -15.88243 -15.18518 -14.84138 -14.71932 -14.46323 -14.23454 -14.00875 -13.80642 -13.70258 -13.32550 -13.09487 -12.58388 -12.34615 -12.24831 -12.20680 -12.18510 -11.90517 -11.69224 -11.67787 -11.58683 -11.55030 -11.37123 -11.33826 -11.17585 -10.85058 -10.62234 -10.60835 -10.45723 -10.24742 -10.04617 -9.97660 -9.62783 -9.37590 -8.70789 -8.17402 -7.99721 -7.58977 -4.94849 1.05780 2.14204 2.69018 2.94799 2.99564 3.16278 3.43439 3.73329 4.07406 4.16749 4.40372 4.62688 4.73148 4.83295 4.89878 5.03342 5.11474 5.16178 5.30322 5.32609 5.46016 5.58534 5.69314 5.72178 5.76842 5.88344 5.88545 5.93084 5.94891 6.00202 6.07440 6.17602 6.23471 6.38622 6.46722 6.52250 6.60939 6.78623 6.80928 7.03714 7.22224 7.37375 7.40175 7.44443 7.58641 7.79088 7.97354 8.35728 8.46961 9.61515 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.004134 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.254251 B = 6771.675190 C = 7212.096264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.094 4.094 5 C 0.087 3.913 6 H 0.070 0.930 7 O -0.568 6.568 8 C 0.096 3.904 9 N -0.999 5.999 10 S 2.690 3.310 11 O -0.982 6.982 12 O -0.980 6.980 13 C -0.796 4.796 14 C 0.013 3.987 15 C -0.236 4.236 16 C 0.119 3.881 17 C -0.483 4.483 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.765 5.765 21 Si 1.068 2.932 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.271 1.271 25 C -0.234 4.234 26 C 0.005 3.995 27 C 0.132 3.868 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.379 0.621 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.306 0.694 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 6.092 5.773 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.132 4.132 5 C 0.027 3.973 6 H 0.088 0.912 7 O -0.372 6.372 8 C -0.030 4.030 9 N -0.834 5.834 10 S 2.790 3.210 11 O -0.972 6.972 12 O -0.971 6.971 13 C -0.893 4.893 14 C -0.007 4.007 15 C -0.256 4.256 16 C 0.115 3.885 17 C -0.509 4.509 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.386 5.386 21 Si 0.889 3.111 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.254 4.254 26 C -0.015 4.015 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.086 0.914 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.893 5.309 5.782 11.862 hybrid contribution 0.380 0.513 -0.446 0.779 sum 9.274 5.822 5.337 12.181 Atomic orbital electron populations 1.22030 0.93074 1.03671 1.01863 1.20983 0.97039 0.95121 0.94633 1.21799 1.00807 0.94741 1.02289 1.21435 1.00804 0.93254 0.97701 1.22278 0.98582 0.92853 0.83625 0.91195 1.86472 1.78021 1.30309 1.42447 1.22013 1.01202 0.95077 0.84724 1.57908 1.72154 1.19600 1.33782 1.01419 0.74485 0.72596 0.72488 1.93479 1.86060 1.31261 1.86437 1.93476 1.85635 1.72497 1.45505 1.29134 1.21650 1.09291 1.29178 1.20105 0.94461 0.93136 0.93015 1.20935 0.94552 1.02728 1.07425 1.17853 0.93123 0.90911 0.86656 1.20983 0.93747 0.97281 1.38853 0.89645 1.27322 1.04321 0.91325 0.96202 1.70459 1.24496 1.25703 1.17934 0.83585 0.73413 0.77609 0.76451 1.19400 1.19678 1.19576 1.21167 0.94182 1.02086 1.07995 1.20149 0.94599 0.94236 0.92514 1.21560 0.99790 0.79748 0.98240 0.92798 0.92265 0.90838 0.92573 0.92091 0.92284 0.91205 0.91387 0.77364 0.89247 0.90888 0.87941 0.88253 0.88009 0.87308 0.87970 0.91383 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 7.77 37.16 0.29 -1.74 16 2 C -0.08 -0.88 0.77 -154.16 -0.12 -1.00 16 3 C -0.14 -1.31 8.48 37.16 0.32 -0.99 16 4 C -0.09 -1.09 4.36 -26.69 -0.12 -1.21 16 5 C 0.09 1.08 3.28 -26.61 -0.09 1.00 16 6 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 7 O -0.57 -6.70 13.32 -35.23 -0.47 -7.17 16 8 C 0.10 1.26 6.00 -3.71 -0.02 1.24 16 9 N -1.00 -14.80 2.72 -113.28 -0.31 -15.11 16 10 S 2.69 50.59 5.69 -107.50 -0.61 49.98 16 11 O -0.98 -20.50 15.97 -57.17 -0.91 -21.41 16 12 O -0.98 -20.22 15.97 -57.17 -0.91 -21.14 16 13 C -0.80 -16.42 5.07 -39.29 -0.20 -16.62 16 14 C 0.01 0.27 9.10 -39.66 -0.36 -0.09 16 15 C -0.24 -5.28 9.80 -38.87 -0.38 -5.66 16 16 C 0.12 2.85 5.30 -106.82 -0.57 2.28 16 17 C -0.48 -11.48 8.98 -37.74 -0.34 -11.82 16 18 H 0.09 1.95 7.96 -52.49 -0.42 1.53 16 19 C 0.03 0.78 4.93 -17.34 -0.09 0.69 16 20 N -0.77 -18.59 12.32 55.55 0.68 -17.91 16 21 Si 1.07 19.24 30.00 -169.99 -5.10 14.14 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 24 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 25 C -0.23 -5.49 7.96 -38.87 -0.31 -5.80 16 26 C 0.01 0.12 9.49 -39.66 -0.38 -0.26 16 27 C 0.13 1.70 5.10 -3.49 -0.02 1.68 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.07 1.15 4.90 -51.93 -0.25 0.90 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.38 3.11 9.08 45.56 0.41 3.52 16 37 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.95 7.60 -52.49 -0.40 1.55 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.31 7.69 6.70 -40.82 -0.27 7.42 16 42 H 0.11 2.61 6.50 -52.49 -0.34 2.27 16 43 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.24 7.12 -51.93 -0.37 0.87 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -28.91 365.90 -10.25 -39.16 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.76 Total: 12.24 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -2.38 Total: -38.30 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.38 Total: -33.01 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.30 Total: -49.72 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.10 Total: 14.14 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.61 Total: 49.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.91 -10.25 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771834997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.940 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds