Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.52508 * 2 1 4 4 C 1.53040 * 109.49624 * 120.08376 * 2 1 3 5 5 C 1.53033 * 109.54259 * 58.58260 * 4 2 1 6 6 H 1.09001 * 109.52659 * 301.40430 * 5 4 2 7 7 O 1.42899 * 109.50229 * 181.31620 * 5 4 2 8 8 C 1.53197 * 109.31149 * 61.36700 * 5 4 2 9 9 N 1.46928 * 108.77323 * 305.36714 * 8 5 4 10 10 S 1.65603 * 120.62854 * 233.58477 * 9 8 5 11 11 O 1.42099 * 106.40467 * 336.46026 * 10 9 8 12 12 O 1.42097 * 106.40296 * 203.53735 * 10 9 8 13 13 C 1.76201 * 107.21719 * 90.00183 * 10 9 8 14 14 C 1.38635 * 119.75350 * 90.00136 * 13 10 9 15 15 C 1.37611 * 120.25212 * 179.97438 * 14 13 10 16 16 C 1.40717 * 119.74429 * 359.97438 * 15 14 13 17 17 C 1.41393 * 120.24544 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 334.84990 * 17 16 15 19 19 C 1.39947 * 120.00447 * 154.85088 * 17 16 15 20 20 N 1.30829 * 119.99580 * 334.27844 * 19 17 16 21 21 Si 1.86794 * 120.00413 * 154.27772 * 19 17 16 22 22 H 1.48504 * 109.47556 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.47307 * 60.00117 * 21 19 17 24 24 H 1.48499 * 109.47060 * 300.00218 * 21 19 17 25 25 C 1.40717 * 119.51251 * 0.27207 * 16 15 14 26 26 C 1.37622 * 119.74258 * 359.45159 * 25 16 15 27 27 C 1.46916 * 118.74031 * 53.85856 * 9 8 5 28 28 H 1.09001 * 109.47040 * 299.91790 * 1 2 3 29 29 H 1.08998 * 109.46443 * 59.91789 * 1 2 3 30 30 H 1.08997 * 109.47028 * 179.91625 * 1 2 3 31 31 H 1.09000 * 109.47203 * 180.08164 * 3 2 1 32 32 H 1.08995 * 109.46895 * 300.08258 * 3 2 1 33 33 H 1.09000 * 109.46741 * 60.08068 * 3 2 1 34 34 H 1.09010 * 109.45773 * 298.56074 * 4 2 1 35 35 H 1.09000 * 109.44951 * 178.60543 * 4 2 1 36 36 H 0.96696 * 114.00437 * 180.16269 * 7 5 4 37 37 H 1.08998 * 109.58856 * 185.58028 * 8 5 4 38 38 H 1.08993 * 109.70185 * 65.21892 * 8 5 4 39 39 H 1.07996 * 119.87152 * 359.95128 * 14 13 10 40 40 H 1.08001 * 120.13153 * 180.02562 * 15 14 13 41 41 H 0.96996 * 120.00212 * 354.29995 * 20 19 17 42 42 H 1.07998 * 120.12873 * 179.72603 * 25 16 15 43 43 H 1.07997 * 119.87625 * 180.27232 * 26 25 16 44 44 H 1.09002 * 109.59021 * 65.92796 * 27 9 8 45 45 H 1.09003 * 109.58968 * 186.35296 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2660 6 1 0.4133 -2.1360 1.2543 7 8 1.9554 -2.8206 2.4473 8 6 2.0141 -2.9041 0.0308 9 7 1.6516 -2.1382 -1.1696 10 16 0.8200 -2.8556 -2.4090 11 8 1.0760 -4.2498 -2.3099 12 8 1.1026 -2.0946 -3.5752 13 6 -0.8972 -2.6403 -2.0784 14 6 -1.5549 -1.5183 -2.5587 15 6 -2.8960 -1.3401 -2.3069 16 6 -3.6000 -2.3022 -1.5594 17 6 -4.9782 -2.1300 -1.2949 18 1 -5.4069 -1.1388 -1.2876 19 6 -5.7870 -3.2439 -1.0427 20 7 -5.4535 -4.4157 -1.5196 21 14 -7.3424 -3.0578 -0.0252 22 1 -8.0154 -4.3760 0.0960 23 1 -8.2562 -2.0942 -0.6897 24 1 -6.9918 -2.5553 1.3275 25 6 -2.9210 -3.4345 -1.0724 26 6 -1.5808 -3.5949 -1.3412 27 6 2.0463 -0.7254 -1.2520 28 1 -0.3633 0.5126 0.8907 29 1 -0.3632 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1314 1.4410 -0.0015 32 1 1.6774 1.9566 -0.8892 33 1 1.6797 1.9557 0.8907 34 1 1.6988 -0.1958 2.1389 35 1 3.1306 -0.7444 1.2351 36 1 1.6536 -3.7361 2.5235 37 1 1.5554 -3.8919 -0.0137 38 1 3.0978 -3.0064 0.0854 39 1 -1.0126 -0.7813 -3.1322 40 1 -3.4065 -0.4655 -2.6824 41 1 -4.6928 -4.4982 -2.1156 42 1 -3.4505 -4.1769 -0.4938 43 1 -1.0586 -4.4652 -0.9723 44 1 3.1328 -0.6516 -1.2985 45 1 1.6089 -0.2752 -2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771834997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -147.123450 kcal Electronic energy + Delta-G solvation = -29205.349307 eV Core-core repulsion = 25312.519890 eV Total energy + Delta-G solvation = -3892.829417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64874 -39.63776 -38.34369 -37.24032 -36.88955 -36.04618 -35.06350 -31.95858 -31.37096 -31.23087 -28.17949 -27.82953 -27.45735 -25.59946 -23.34096 -23.20438 -22.84492 -20.29258 -20.01951 -19.49210 -18.84764 -18.26032 -18.09161 -17.19170 -16.59636 -16.24258 -16.17602 -15.71099 -15.45989 -15.36065 -15.15364 -14.93510 -14.70061 -14.34389 -14.16973 -14.07072 -13.60980 -13.40523 -13.29651 -13.23425 -13.18159 -13.10081 -12.90029 -12.83747 -12.75878 -12.58704 -12.30431 -12.09708 -11.99564 -11.79673 -11.75620 -11.55090 -11.48331 -11.19143 -11.07421 -11.00883 -9.99720 -9.84570 -9.76725 -9.38621 -6.77865 -0.45999 0.40027 0.88820 1.47740 1.53425 1.77003 2.04645 2.23523 2.46543 2.84416 3.15583 3.33362 3.39262 3.71183 3.76797 3.87849 3.95437 4.14289 4.16433 4.18235 4.25557 4.34180 4.52769 4.66222 4.67376 4.75977 4.78237 4.84714 4.87543 4.93803 5.01171 5.02960 5.05106 5.17477 5.23113 5.23210 5.30707 5.42707 5.44810 5.48074 5.55396 5.56386 5.64555 5.67615 6.00712 6.18896 6.56594 6.68875 6.79848 7.78804 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.004134 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.254251 B = 6771.675190 C = 7212.096264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 C -0.135 4.135 4 C -0.092 4.092 5 C 0.091 3.909 6 H 0.051 0.949 7 O -0.573 6.573 8 C 0.092 3.908 9 N -0.990 5.990 10 S 2.714 3.286 11 O -1.001 7.001 12 O -0.995 6.995 13 C -0.796 4.796 14 C 0.016 3.984 15 C -0.250 4.250 16 C 0.098 3.902 17 C -0.515 4.515 18 H 0.088 0.912 19 C 0.004 3.996 20 N -0.790 5.790 21 Si 1.117 2.883 22 H -0.271 1.271 23 H -0.253 1.253 24 H -0.260 1.260 25 C -0.251 4.251 26 C 0.003 3.997 27 C 0.122 3.878 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.393 0.607 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.289 0.711 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 7.401 6.689 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.070 4.070 3 C -0.193 4.193 4 C -0.130 4.130 5 C 0.031 3.969 6 H 0.069 0.931 7 O -0.380 6.380 8 C -0.034 4.034 9 N -0.828 5.828 10 S 2.812 3.188 11 O -0.992 6.992 12 O -0.986 6.986 13 C -0.889 4.889 14 C -0.004 4.004 15 C -0.271 4.271 16 C 0.094 3.906 17 C -0.541 4.541 18 H 0.106 0.894 19 C -0.215 4.215 20 N -0.411 5.411 21 Si 0.933 3.067 22 H -0.195 1.195 23 H -0.177 1.177 24 H -0.184 1.184 25 C -0.271 4.271 26 C -0.017 4.017 27 C -0.003 4.003 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.633 6.621 6.688 14.200 hybrid contribution 0.073 0.131 -0.735 0.751 sum 10.706 6.753 5.953 13.988 Atomic orbital electron populations 1.22022 0.94957 1.01990 1.01767 1.20929 0.95337 0.96583 0.94143 1.21782 1.01912 0.92850 1.02759 1.21442 1.01551 0.92376 0.97589 1.22158 0.97524 0.93628 0.83596 0.93119 1.86448 1.78028 1.31610 1.41930 1.22215 1.02447 0.94702 0.83993 1.57547 1.70930 1.20779 1.33564 1.00687 0.73484 0.72014 0.72658 1.93452 1.85932 1.32842 1.86949 1.93454 1.85438 1.72723 1.46963 1.29617 1.23648 1.08362 1.27247 1.20334 0.94042 0.93506 0.92525 1.21127 0.95350 1.02948 1.07643 1.18159 0.93829 0.91515 0.87073 1.21177 0.94114 0.97829 1.41005 0.89379 1.28670 1.06513 0.90455 0.95901 1.70573 1.24611 1.26606 1.19293 0.82999 0.70247 0.77859 0.75597 1.19522 1.17715 1.18445 1.21146 0.94948 1.02164 1.08859 1.20337 0.94091 0.94890 0.92332 1.21887 1.01505 0.78192 0.98677 0.92350 0.92955 0.93272 0.90797 0.91879 0.91671 0.91018 0.89970 0.75694 0.89750 0.88728 0.85951 0.87424 0.89842 0.88640 0.86689 0.88579 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 7.77 71.99 0.56 -3.37 16 2 C -0.07 -1.41 0.77 -51.96 -0.04 -1.45 16 3 C -0.14 -2.11 8.48 71.98 0.61 -1.50 16 4 C -0.09 -1.87 4.36 30.62 0.13 -1.74 16 5 C 0.09 2.11 3.28 30.67 0.10 2.22 16 6 H 0.05 1.38 6.34 -2.39 -0.02 1.36 16 7 O -0.57 -12.32 13.32 -148.98 -1.98 -14.30 16 8 C 0.09 2.21 6.00 86.36 0.52 2.73 16 9 N -0.99 -27.34 2.72 -512.30 -1.39 -28.73 16 10 S 2.71 98.94 5.69 -56.49 -0.32 98.62 16 11 O -1.00 -40.79 15.97 -128.00 -2.04 -42.83 16 12 O -1.00 -39.52 15.97 -128.00 -2.04 -41.56 16 13 C -0.80 -32.75 5.07 22.46 0.11 -32.64 16 14 C 0.02 0.65 9.10 22.22 0.20 0.86 16 15 C -0.25 -11.42 9.80 22.73 0.22 -11.20 16 16 C 0.10 4.87 5.30 -21.29 -0.11 4.76 16 17 C -0.52 -25.32 8.98 23.46 0.21 -25.11 16 18 H 0.09 4.13 7.96 -2.91 -0.02 4.10 16 19 C 0.00 0.21 4.93 85.26 0.42 0.63 16 20 N -0.79 -39.91 12.32 21.83 0.27 -39.64 16 21 Si 1.12 38.90 30.00 68.60 2.06 40.96 16 22 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.25 -8.01 7.11 99.48 0.71 -7.30 16 24 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 25 C -0.25 -12.24 7.96 22.73 0.18 -12.06 16 26 C 0.00 0.15 9.49 22.22 0.21 0.36 16 27 C 0.12 2.79 5.10 86.51 0.44 3.23 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.05 1.52 4.90 -2.39 -0.01 1.51 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.39 5.77 9.08 -74.06 -0.67 5.10 16 37 H 0.08 2.12 7.13 -2.39 -0.02 2.10 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 4.55 7.60 -2.91 -0.02 4.53 16 40 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.29 15.35 6.70 -92.71 -0.62 14.73 16 42 H 0.10 4.84 6.50 -2.91 -0.02 4.82 16 43 H 0.12 4.67 7.59 -2.91 -0.02 4.65 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 2.12 7.12 -2.39 -0.02 2.10 16 Total: -1.00 -62.69 365.90 -1.21 -63.90 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.48 Total: 37.87 kcal Atomic # 6 Polarization: -78.05 SS G_CDS: 3.77 Total: -74.28 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -1.12 Total: -68.38 kcal Atomic # 8 Polarization: -92.62 SS G_CDS: -6.07 Total: -98.69 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.06 Total: 40.96 kcal Atomic # 16 Polarization: 98.94 SS G_CDS: -0.32 Total: 98.62 kcal Total: -62.69 -1.21 -63.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771834997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.223 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds