Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38041 * 126.29601 * 2 1 4 4 C 1.47418 * 126.41202 * 359.97438 * 3 2 1 5 5 O 1.21632 * 120.00404 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00209 * 180.02562 * 4 3 2 7 7 C 1.40748 * 120.00255 * 180.02562 * 6 4 3 8 8 C 1.35754 * 126.07745 * 359.68324 * 7 6 4 9 9 N 1.35837 * 107.55521 * 179.89860 * 8 7 6 10 10 C 1.46502 * 126.05151 * 180.13617 * 9 8 7 11 11 N 1.40069 * 107.89281 * 0.36940 * 9 8 7 12 12 C 1.30829 * 108.36770 * 359.77038 * 11 9 8 13 13 C 1.50698 * 125.82954 * 179.97438 * 12 11 9 14 14 F 1.39898 * 109.47345 * 30.03460 * 13 12 11 15 15 F 1.39896 * 109.47349 * 150.03964 * 13 12 11 16 16 C 1.41294 * 107.17254 * 179.97438 * 3 2 1 17 17 N 1.30451 * 108.02534 * 359.75759 * 16 3 2 18 18 N 1.34280 * 126.28568 * 179.97438 * 2 1 3 19 19 C 1.46491 * 125.76107 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46957 * 89.99919 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 H 1.09004 * 109.46862 * 270.02755 * 1 2 3 29 29 H 1.08997 * 109.46806 * 30.02445 * 1 2 3 30 30 H 1.09002 * 109.47041 * 150.02630 * 1 2 3 31 31 H 0.96999 * 119.99797 * 359.97438 * 6 4 3 32 32 H 1.07994 * 126.22360 * 0.02562 * 8 7 6 33 33 H 1.09002 * 109.47087 * 270.24639 * 10 9 8 34 34 H 1.08995 * 109.47227 * 30.24921 * 10 9 8 35 35 H 1.09000 * 109.47109 * 150.24874 * 10 9 8 36 36 H 1.09000 * 109.46928 * 270.04196 * 13 12 11 37 37 H 1.07999 * 125.98031 * 179.97438 * 16 3 2 38 38 H 1.09004 * 109.47166 * 330.00185 * 19 18 2 39 39 H 1.08994 * 109.47507 * 209.99891 * 19 18 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5201 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8001 3.5105 -0.0010 7 6 2.3817 4.8544 -0.0009 8 6 1.0965 5.2916 -0.0065 9 7 1.1257 6.6496 -0.0020 10 6 -0.0400 7.5370 -0.0027 11 7 2.4676 7.0513 -0.0020 12 6 3.2186 5.9800 -0.0014 13 6 4.7254 5.9590 -0.0017 14 9 5.2078 7.0947 0.6576 15 9 5.1759 4.8104 0.6578 16 6 3.6591 0.6497 0.0006 17 7 3.6341 -0.6546 0.0062 18 7 2.3017 -1.0824 0.0005 19 6 1.8502 -2.4760 0.0016 20 6 1.6948 -2.9548 -1.4188 21 1 1.9112 -2.2879 -2.2403 22 6 1.2824 -4.2464 -1.6697 23 7 1.0192 -5.0586 -0.6694 24 14 1.0972 -4.8422 -3.4304 25 1 1.4521 -3.7439 -4.3646 26 1 2.0012 -5.9980 -3.6595 27 1 -0.3085 -5.2589 -3.6668 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 3.7463 3.2972 -0.0006 32 1 0.2118 4.6723 -0.0114 33 1 -0.3286 7.7570 -1.0305 34 1 -0.8683 7.0491 0.5108 35 1 0.2098 8.4653 0.5111 36 1 5.0884 5.9539 -1.0294 37 1 4.5449 1.2675 0.0004 38 1 0.8917 -2.5469 0.5159 39 1 2.5849 -3.0956 0.5156 40 1 0.7287 -5.9672 -0.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772145010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = 14.901971 kcal Electronic energy + Delta-G solvation = -28741.850404 eV Core-core repulsion = 24230.958957 eV Total energy + Delta-G solvation = -4510.891447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29360 -47.32103 -41.65016 -40.80596 -38.84129 -34.97188 -33.94887 -33.34443 -32.10917 -31.30635 -29.79514 -28.68789 -27.32757 -26.69994 -25.23478 -23.55320 -22.66219 -21.54598 -20.91607 -19.63272 -19.07341 -18.06308 -17.78961 -17.30341 -16.89863 -16.63383 -16.53563 -15.79786 -15.54833 -15.09613 -14.93909 -14.50887 -14.22139 -14.14164 -14.02811 -13.69175 -13.60961 -13.28876 -13.26949 -13.07451 -12.79340 -12.61409 -12.52500 -12.12468 -11.85389 -11.71781 -11.53249 -11.19085 -11.13177 -10.94822 -10.80339 -10.40443 -10.24822 -9.95493 -9.72008 -9.53124 -8.75041 -8.64693 -8.18995 -7.74943 -6.37199 -4.45284 1.43656 1.85553 1.98422 2.42374 2.78089 3.01045 3.14608 3.22937 3.26819 3.35980 3.57122 3.81754 3.84050 4.04018 4.21428 4.52666 4.58796 4.78827 4.84754 4.96710 5.06195 5.10144 5.17764 5.36337 5.44351 5.52353 5.67450 5.71286 5.87663 6.03095 6.38542 6.48738 6.51993 6.72283 6.82029 6.86450 7.09348 7.17693 7.51830 7.56962 7.72399 7.73747 8.29777 8.40046 8.60804 9.22050 10.71014 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.002547 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.238915 B =10988.919166 C =11819.944508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 C -0.333 4.333 4 C 0.607 3.393 5 O -0.548 6.548 6 N -0.645 5.645 7 C 0.036 3.964 8 C 0.042 3.958 9 N -0.364 5.364 10 C 0.106 3.894 11 N -0.248 5.248 12 C -0.029 4.029 13 C 0.361 3.639 14 F -0.189 7.189 15 F -0.190 7.190 16 C 0.060 3.940 17 N -0.292 5.292 18 N -0.312 5.312 19 C 0.250 3.750 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.413 0.587 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 22.358 1.290 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.033 3.967 3 C -0.348 4.348 4 C 0.400 3.600 5 O -0.427 6.427 6 N -0.291 5.291 7 C -0.069 4.069 8 C -0.105 4.105 9 N -0.151 5.151 10 C -0.035 4.035 11 N -0.073 5.073 12 C -0.197 4.197 13 C 0.305 3.695 14 F -0.170 7.170 15 F -0.172 7.172 16 C -0.127 4.127 17 N -0.112 5.112 18 N -0.089 5.089 19 C 0.133 3.867 20 C -0.579 4.579 21 H 0.085 0.915 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.226 0.774 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.194 0.806 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.277 22.351 1.386 22.396 hybrid contribution 0.070 -0.710 -0.770 1.049 sum 0.347 21.641 0.616 21.653 Atomic orbital electron populations 1.20632 0.86730 1.04938 1.03359 1.21462 0.94980 0.86404 0.93843 1.19440 0.93361 0.91690 1.30318 1.17331 0.84605 0.83822 0.74252 1.90524 1.16831 1.83634 1.51752 1.42911 1.10849 1.01607 1.73724 1.17318 0.91771 0.84398 1.13414 1.23237 0.99709 0.83474 1.04037 1.48448 1.04592 1.05300 1.56740 1.21925 0.83724 0.94132 1.03742 1.77160 0.87304 1.21083 1.21728 1.22461 0.95839 0.91465 1.09935 1.19467 0.85159 0.71463 0.93394 1.93034 1.88937 1.51302 1.83770 1.92984 1.89658 1.50500 1.84019 1.23774 0.96307 0.92688 0.99981 1.77173 0.98568 1.12170 1.23261 1.49416 1.02490 1.08346 1.48636 1.19883 0.96481 0.70813 0.99515 1.21294 1.47573 0.98086 0.90990 0.91543 1.24930 0.94424 0.95986 0.98321 1.69924 1.44499 1.07122 1.31069 0.86268 0.77970 0.78886 0.83399 1.19500 1.20548 1.20540 0.90390 0.88593 0.89777 0.75006 0.77386 0.90370 0.88837 0.89112 0.84944 0.80576 0.92490 0.92400 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.34 36.01 0.34 -1.33 16 2 C 0.17 3.32 7.01 -81.59 -0.57 2.75 16 3 C -0.33 -5.82 6.13 -105.07 -0.64 -6.46 16 4 C 0.61 9.59 7.79 -12.52 -0.10 9.49 16 5 O -0.55 -9.18 11.99 5.25 0.06 -9.12 16 6 N -0.65 -8.45 5.37 -11.00 -0.06 -8.51 16 7 C 0.04 0.46 6.78 -83.89 -0.57 -0.10 16 8 C 0.04 0.51 10.38 -16.67 -0.17 0.34 16 9 N -0.36 -3.92 4.04 -67.81 -0.27 -4.20 16 10 C 0.11 0.63 11.48 59.85 0.69 1.31 16 11 N -0.25 -3.06 12.49 33.75 0.42 -2.64 16 12 C -0.03 -0.34 6.85 -82.26 -0.56 -0.91 16 13 C 0.36 3.37 5.83 36.00 0.21 3.58 16 14 F -0.19 -2.07 17.27 2.25 0.04 -2.03 16 15 F -0.19 -1.90 15.27 2.25 0.03 -1.87 16 16 C 0.06 1.01 11.50 -16.98 -0.20 0.82 16 17 N -0.29 -6.12 12.50 30.86 0.39 -5.73 16 18 N -0.31 -6.84 3.56 -57.78 -0.21 -7.05 16 19 C 0.25 6.06 5.78 -5.20 -0.03 6.03 16 20 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 21 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16 24 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.55 6.50 -51.93 -0.34 1.21 16 30 H 0.08 1.49 7.70 -51.93 -0.40 1.09 16 31 H 0.41 4.61 5.90 -40.82 -0.24 4.37 16 32 H 0.21 2.59 5.84 -52.49 -0.31 2.29 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.18 2.16 7.50 -52.49 -0.39 1.77 16 38 H 0.06 1.37 7.62 -51.93 -0.40 0.97 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -32.05 356.39 -4.70 -36.75 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.16 Total: 4.41 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.03 Total: 2.64 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 1.00 Total: -51.55 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.05 -4.70 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772145010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.648 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds