Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38041 * 126.29601 * 2 1 4 4 C 1.47418 * 126.41202 * 359.97438 * 3 2 1 5 5 O 1.21632 * 120.00404 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00209 * 180.02562 * 4 3 2 7 7 C 1.40748 * 120.00255 * 180.02562 * 6 4 3 8 8 C 1.35754 * 126.07745 * 359.68324 * 7 6 4 9 9 N 1.35837 * 107.55521 * 179.89860 * 8 7 6 10 10 C 1.46502 * 126.05151 * 180.13617 * 9 8 7 11 11 N 1.40069 * 107.89281 * 0.36940 * 9 8 7 12 12 C 1.30829 * 108.36770 * 359.77038 * 11 9 8 13 13 C 1.50698 * 125.82954 * 179.97438 * 12 11 9 14 14 F 1.39898 * 109.47345 * 30.03460 * 13 12 11 15 15 F 1.39896 * 109.47349 * 150.03964 * 13 12 11 16 16 C 1.41294 * 107.17254 * 179.97438 * 3 2 1 17 17 N 1.30451 * 108.02534 * 359.75759 * 16 3 2 18 18 N 1.34280 * 126.28568 * 179.97438 * 2 1 3 19 19 C 1.46491 * 125.76107 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46957 * 89.99919 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 H 1.09004 * 109.46862 * 270.02755 * 1 2 3 29 29 H 1.08997 * 109.46806 * 30.02445 * 1 2 3 30 30 H 1.09002 * 109.47041 * 150.02630 * 1 2 3 31 31 H 0.96999 * 119.99797 * 359.97438 * 6 4 3 32 32 H 1.07994 * 126.22360 * 0.02562 * 8 7 6 33 33 H 1.09002 * 109.47087 * 270.24639 * 10 9 8 34 34 H 1.08995 * 109.47227 * 30.24921 * 10 9 8 35 35 H 1.09000 * 109.47109 * 150.24874 * 10 9 8 36 36 H 1.09000 * 109.46928 * 270.04196 * 13 12 11 37 37 H 1.07999 * 125.98031 * 179.97438 * 16 3 2 38 38 H 1.09004 * 109.47166 * 330.00185 * 19 18 2 39 39 H 1.08994 * 109.47507 * 209.99891 * 19 18 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5201 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8001 3.5105 -0.0010 7 6 2.3817 4.8544 -0.0009 8 6 1.0965 5.2916 -0.0065 9 7 1.1257 6.6496 -0.0020 10 6 -0.0400 7.5370 -0.0027 11 7 2.4676 7.0513 -0.0020 12 6 3.2186 5.9800 -0.0014 13 6 4.7254 5.9590 -0.0017 14 9 5.2078 7.0947 0.6576 15 9 5.1759 4.8104 0.6578 16 6 3.6591 0.6497 0.0006 17 7 3.6341 -0.6546 0.0062 18 7 2.3017 -1.0824 0.0005 19 6 1.8502 -2.4760 0.0016 20 6 1.6948 -2.9548 -1.4188 21 1 1.9112 -2.2879 -2.2403 22 6 1.2824 -4.2464 -1.6697 23 7 1.0192 -5.0586 -0.6694 24 14 1.0972 -4.8422 -3.4304 25 1 1.4521 -3.7439 -4.3646 26 1 2.0012 -5.9980 -3.6595 27 1 -0.3085 -5.2589 -3.6668 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 3.7463 3.2972 -0.0006 32 1 0.2118 4.6723 -0.0114 33 1 -0.3286 7.7570 -1.0305 34 1 -0.8683 7.0491 0.5108 35 1 0.2098 8.4653 0.5111 36 1 5.0884 5.9539 -1.0294 37 1 4.5449 1.2675 0.0004 38 1 0.8917 -2.5469 0.5159 39 1 2.5849 -3.0956 0.5156 40 1 0.7287 -5.9672 -0.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772145010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -5.993295 kcal Electronic energy + Delta-G solvation = -28742.756491 eV Core-core repulsion = 24230.958957 eV Total energy + Delta-G solvation = -4511.797533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.03955 -48.07903 -42.62332 -42.19583 -40.05198 -36.03909 -35.76383 -34.25404 -33.74188 -32.79903 -30.78967 -29.54666 -28.91145 -28.12051 -26.07773 -25.29018 -23.87044 -22.66605 -21.86132 -20.97749 -20.39614 -19.02708 -18.84702 -18.52792 -18.14639 -17.92876 -17.38974 -16.77585 -16.68141 -16.43376 -16.26363 -16.06308 -15.47807 -15.35954 -14.97841 -14.76918 -14.52895 -14.37741 -14.32212 -14.08639 -13.94436 -13.66849 -13.60593 -13.57291 -13.43767 -13.08164 -12.94037 -12.71637 -12.48376 -12.31421 -12.03703 -11.85501 -11.79815 -11.71663 -10.82951 -10.75573 -10.54387 -10.26004 -9.60467 -8.80167 -8.37165 -6.53419 0.54288 0.58996 1.17275 1.22855 1.37307 1.39590 1.50660 1.54128 1.66135 2.17524 2.33704 2.55883 2.72787 2.95252 3.12661 3.23764 3.70605 3.74852 3.90730 3.93445 4.04559 4.17854 4.24200 4.44114 4.46400 4.59965 4.63823 4.70066 4.70913 4.79575 4.81870 4.91715 5.11688 5.17607 5.49501 5.51665 5.64985 5.75720 5.94946 6.04899 6.28142 6.51632 6.56226 6.83394 7.17854 7.20036 8.70845 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.002547 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.238915 B =10988.919166 C =11819.944508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.154 3.846 3 C -0.329 4.329 4 C 0.609 3.391 5 O -0.560 6.560 6 N -0.630 5.630 7 C 0.012 3.988 8 C 0.039 3.961 9 N -0.360 5.360 10 C 0.094 3.906 11 N -0.266 5.266 12 C -0.030 4.030 13 C 0.358 3.642 14 F -0.200 7.200 15 F -0.195 7.195 16 C 0.079 3.921 17 N -0.334 5.334 18 N -0.338 5.338 19 C 0.267 3.733 20 C -0.554 4.554 21 H 0.053 0.947 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.272 1.272 26 H -0.275 1.275 27 H -0.269 1.269 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.422 0.578 32 H 0.207 0.793 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.224 0.776 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 24.230 0.394 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 C -0.344 4.344 4 C 0.400 3.600 5 O -0.440 6.440 6 N -0.276 5.276 7 C -0.092 4.092 8 C -0.108 4.108 9 N -0.146 5.146 10 C -0.045 4.045 11 N -0.091 5.091 12 C -0.198 4.198 13 C 0.303 3.697 14 F -0.181 7.181 15 F -0.176 7.176 16 C -0.108 4.108 17 N -0.154 5.154 18 N -0.114 5.114 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.071 0.929 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.194 1.194 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.224 0.776 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.192 0.808 37 H 0.240 0.760 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.388 24.278 0.499 24.287 hybrid contribution 0.010 -1.096 -0.440 1.182 sum 0.398 23.182 0.059 23.186 Atomic orbital electron populations 1.20633 0.85484 1.04563 1.04247 1.21977 0.96064 0.86423 0.93766 1.19670 0.93349 0.92271 1.29138 1.17063 0.84776 0.83529 0.74655 1.90522 1.17378 1.83735 1.52392 1.42649 1.10868 1.01403 1.72693 1.17496 0.92425 0.84261 1.15058 1.23267 0.99577 0.84350 1.03613 1.48843 1.05095 1.05254 1.55438 1.22337 0.82777 0.94114 1.05306 1.77134 0.88121 1.21571 1.22316 1.22791 0.97041 0.90749 1.09196 1.19933 0.83895 0.70831 0.95044 1.93011 1.88896 1.51968 1.84222 1.92969 1.89541 1.50724 1.84362 1.24510 0.97686 0.91700 0.96941 1.77124 0.98402 1.14283 1.25563 1.49137 1.03370 1.07830 1.51103 1.19383 0.95349 0.72281 0.98163 1.21434 1.47875 0.98367 0.91578 0.92886 1.25721 0.93866 0.95974 1.02179 1.70004 1.44968 1.07561 1.32958 0.85304 0.78408 0.78184 0.78584 1.19622 1.20023 1.19365 0.88871 0.87726 0.91143 0.73915 0.77636 0.88755 0.86939 0.88052 0.80771 0.76001 0.92985 0.95068 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.09 9.34 71.24 0.67 -2.42 16 2 C 0.15 6.00 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.14 6.13 -20.16 -0.12 -11.27 16 4 C 0.61 18.24 7.79 86.66 0.67 18.92 16 5 O -0.56 -18.02 11.99 -4.13 -0.05 -18.07 16 6 N -0.63 -15.18 5.37 -306.97 -1.65 -16.83 16 7 C 0.01 0.29 6.78 37.62 0.26 0.55 16 8 C 0.04 0.90 10.38 83.50 0.87 1.77 16 9 N -0.36 -7.07 4.04 -368.46 -1.49 -8.56 16 10 C 0.09 0.90 11.48 127.77 1.47 2.36 16 11 N -0.27 -6.07 12.49 -47.15 -0.59 -6.66 16 12 C -0.03 -0.65 6.85 43.20 0.30 -0.35 16 13 C 0.36 5.80 5.83 71.24 0.42 6.21 16 14 F -0.20 -3.99 17.27 44.97 0.78 -3.22 16 15 F -0.19 -3.42 15.27 44.97 0.69 -2.73 16 16 C 0.08 2.55 11.50 85.65 0.99 3.53 16 17 N -0.33 -14.04 12.50 -56.27 -0.70 -14.74 16 18 N -0.34 -15.11 3.56 -336.70 -1.20 -16.31 16 19 C 0.27 13.46 5.78 85.64 0.50 13.95 16 20 C -0.55 -29.91 9.39 25.60 0.24 -29.67 16 21 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 22 C 0.02 1.27 5.46 84.66 0.46 1.74 16 23 N -0.92 -50.56 13.29 21.45 0.28 -50.27 16 24 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.10 3.32 6.50 -2.39 -0.02 3.31 16 30 H 0.07 2.55 7.70 -2.39 -0.02 2.54 16 31 H 0.42 8.31 5.90 -92.71 -0.55 7.76 16 32 H 0.21 4.85 5.84 -2.91 -0.02 4.83 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.18 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.22 4.73 7.50 -2.91 -0.02 4.71 16 38 H 0.05 2.62 7.62 -2.38 -0.02 2.60 16 39 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -69.89 356.39 5.66 -64.23 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.57 Total: 17.60 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.99 Total: 11.61 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -5.34 Total: -113.38 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 1.46 Total: -5.95 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -69.89 5.66 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772145010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.234 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds