Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46967 * 2 1 4 4 N 1.46502 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.36869 * 119.99907 * 274.12334 * 4 3 2 6 6 H 1.08000 * 119.99833 * 134.41837 * 5 4 3 7 7 C 1.39044 * 120.00144 * 314.40915 * 5 4 3 8 8 N 1.31365 * 120.00109 * 2.35876 * 7 5 4 9 9 Si 1.86799 * 120.00053 * 182.35579 * 7 5 4 10 10 H 1.48494 * 109.47136 * 90.00297 * 9 7 5 11 11 H 1.48509 * 109.47108 * 210.00070 * 9 7 5 12 12 H 1.48495 * 109.47132 * 329.99967 * 9 7 5 13 13 C 1.34774 * 119.99702 * 94.11925 * 4 3 2 14 14 O 1.21596 * 120.00110 * 4.26179 * 13 4 3 15 15 C 1.47726 * 120.00040 * 184.26069 * 13 4 3 16 16 C 1.39670 * 120.14845 * 326.26148 * 15 13 4 17 17 C 1.37911 * 119.84323 * 179.97438 * 16 15 13 18 18 C 1.38397 * 120.15477 * 0.25901 * 17 16 15 19 19 C 1.50703 * 119.84751 * 179.74302 * 18 17 16 20 20 C 1.52990 * 109.47114 * 272.76624 * 19 18 17 21 21 C 1.38357 * 120.30402 * 359.48133 * 18 17 16 22 22 S 1.76195 * 119.92383 * 180.26037 * 21 18 17 23 23 C 1.81399 * 104.45219 * 68.42885 * 22 21 18 24 24 O 1.42099 * 104.27804 * 184.49567 * 22 21 18 25 25 O 1.42094 * 104.28095 * 312.35436 * 22 21 18 26 26 C 1.37957 * 120.14787 * 0.51376 * 21 18 17 27 27 H 1.08992 * 109.47225 * 59.99606 * 1 2 3 28 28 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46593 * 299.99600 * 1 2 3 30 30 H 1.08998 * 109.47331 * 240.00376 * 2 1 3 31 31 H 1.09000 * 109.47377 * 120.00112 * 2 1 3 32 32 H 1.08998 * 109.46788 * 60.00043 * 3 2 1 33 33 H 1.09000 * 109.47164 * 300.00243 * 3 2 1 34 34 H 0.96998 * 120.00635 * 180.02562 * 8 7 5 35 35 H 1.07995 * 120.07516 * 359.95262 * 16 15 13 36 36 H 1.08004 * 119.92468 * 179.97438 * 17 16 15 37 37 H 1.09004 * 109.47072 * 32.76843 * 19 18 17 38 38 H 1.09005 * 109.46577 * 152.76330 * 19 18 17 39 39 H 1.09005 * 109.47548 * 306.49499 * 20 19 18 40 40 H 1.09002 * 109.47618 * 66.49937 * 20 19 18 41 41 H 1.09004 * 109.47476 * 186.50001 * 20 19 18 42 42 H 1.09007 * 109.47247 * 65.72587 * 23 22 21 43 43 H 1.08994 * 109.47623 * 185.73064 * 23 22 21 44 44 H 1.09007 * 109.46961 * 305.73634 * 23 22 21 45 45 H 1.08004 * 120.07622 * 179.76600 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1889 1.3576 1.1832 6 1 5.0258 0.6812 1.2756 7 6 3.8063 2.1421 2.2655 8 7 2.7602 2.9307 2.1680 9 14 4.7797 2.0747 3.8584 10 1 5.8608 3.0920 3.8212 11 1 3.8759 2.3545 5.0031 12 1 5.3761 0.7241 4.0172 13 6 4.1794 1.5263 -1.1633 14 8 3.5743 1.6797 -2.2068 15 6 5.6536 1.4317 -1.1713 16 6 6.3951 1.9430 -0.1039 17 6 7.7711 1.8508 -0.1177 18 6 8.4175 1.2582 -1.1884 19 6 9.9217 1.1663 -1.1989 20 6 10.5064 2.4443 -1.8034 21 6 7.6888 0.7448 -2.2465 22 16 8.5217 -0.0138 -3.6013 23 6 9.2210 -1.5369 -2.9073 24 8 7.4850 -0.3168 -4.5247 25 8 9.5552 0.9026 -3.9349 26 6 6.3119 0.8301 -2.2457 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4934 3.4783 2.9228 35 1 5.8922 2.4098 0.7300 36 1 8.3459 2.2462 0.7068 37 1 10.2856 1.0475 -0.1783 38 1 10.2290 0.3080 -1.7965 39 1 10.0546 2.6247 -2.7789 40 1 10.2968 3.2869 -1.1445 41 1 11.5846 2.3320 -1.9177 42 1 8.4128 -2.2074 -2.6146 43 1 9.8445 -2.0248 -3.6565 44 1 9.8257 -1.2939 -2.0336 45 1 5.7444 0.4324 -3.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125764904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -97.334650 kcal Electronic energy + Delta-G solvation = -28378.230753 eV Core-core repulsion = 24487.560340 eV Total energy + Delta-G solvation = -3890.670413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25923 -39.69505 -38.22093 -37.15370 -36.95640 -35.22350 -34.44537 -33.24989 -32.21551 -30.56080 -30.37648 -27.76905 -26.79845 -25.05503 -24.13190 -22.73967 -22.10948 -21.40377 -20.18498 -19.40720 -18.24076 -17.50882 -17.18995 -17.09357 -16.66833 -16.59419 -16.10641 -15.93140 -15.52376 -15.46618 -15.05041 -14.84512 -14.65126 -14.41069 -14.15207 -13.93828 -13.79317 -13.55522 -13.34253 -13.31464 -13.15555 -13.06922 -12.89571 -12.82903 -12.68461 -12.60484 -12.44118 -12.12396 -12.05924 -11.99116 -11.96673 -11.63767 -11.53497 -11.43709 -11.08023 -10.54989 -10.23214 -9.79165 -9.46338 -8.24120 -6.20781 -0.85086 -0.17309 0.10008 1.43579 1.47238 1.58714 1.83672 1.94356 2.26615 2.56506 2.87482 2.97997 3.05098 3.27423 3.64152 3.74556 4.00363 4.07102 4.14330 4.18273 4.23376 4.30208 4.37209 4.49252 4.51720 4.53666 4.61231 4.76054 4.83605 4.87152 4.95869 4.98048 5.03050 5.07200 5.13886 5.19950 5.22277 5.33824 5.38651 5.42007 5.52208 5.64508 5.66471 5.87459 6.01783 6.39608 7.02519 7.44156 7.90771 8.69729 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.004210 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.548140 B = 6649.346248 C = 8143.159695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.095 3.905 4 N -0.438 5.438 5 C -0.349 4.349 6 H 0.098 0.902 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.980 3.020 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.255 1.255 13 C 0.492 3.508 14 O -0.639 6.639 15 C -0.149 4.149 16 C -0.026 4.026 17 C -0.150 4.150 18 C 0.026 3.974 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.675 4.675 22 S 2.495 3.505 23 C -0.628 4.628 24 O -0.988 6.988 25 O -0.949 6.949 26 C 0.000 4.000 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.028 0.972 34 H 0.275 0.725 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.937 -8.141 0.830 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C -0.028 4.028 4 N -0.153 5.153 5 C -0.477 4.477 6 H 0.116 0.884 7 C -0.196 4.196 8 N -0.531 5.531 9 Si 0.802 3.198 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.179 1.179 13 C 0.282 3.718 14 O -0.528 6.528 15 C -0.153 4.153 16 C -0.045 4.045 17 C -0.168 4.168 18 C 0.025 3.975 19 C -0.145 4.145 20 C -0.209 4.209 21 C -0.759 4.759 22 S 2.678 3.322 23 C -0.782 4.782 24 O -0.986 6.986 25 O -0.946 6.946 26 C -0.020 4.020 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.167 0.833 43 H 0.183 0.817 44 H 0.180 0.820 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.493 -7.569 -0.345 17.246 hybrid contribution -0.908 0.221 1.225 1.541 sum 14.585 -7.347 0.880 16.355 Atomic orbital electron populations 1.21595 0.93563 1.02312 1.01734 1.21686 0.97310 0.96838 1.00086 1.21871 0.81309 0.96770 1.02839 1.43545 1.05447 1.61391 1.04961 1.19718 1.15530 1.23486 0.88925 0.88427 1.26390 0.96843 0.93648 1.02717 1.69664 1.24928 1.25226 1.33279 0.85113 0.78358 0.79854 0.76438 1.18499 1.20846 1.17865 1.19020 0.88149 0.80322 0.84262 1.90582 1.71057 1.57318 1.33855 1.20026 0.93008 1.04755 0.97492 1.22479 0.94666 0.91460 0.95884 1.21497 0.93312 1.01896 1.00138 1.20101 0.96841 0.90104 0.90447 1.21180 0.87295 1.00757 1.05230 1.21837 1.01901 0.95887 1.01310 1.30440 1.03397 1.21580 1.20522 1.05271 0.74275 0.78519 0.74157 1.30172 1.14841 1.17284 1.15889 1.93521 1.57951 1.86234 1.60866 1.93558 1.57353 1.61534 1.82155 1.20845 0.93277 0.92473 0.95443 0.93135 0.90892 0.92352 0.94888 0.92464 0.86535 0.95335 0.91437 0.83037 0.81706 0.86292 0.89498 0.92436 0.92577 0.90003 0.83315 0.81663 0.81957 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.91 71.98 0.71 -3.84 16 2 C -0.12 -5.14 6.24 30.60 0.19 -4.95 16 3 C 0.10 4.79 5.13 86.38 0.44 5.23 16 4 N -0.44 -22.80 2.52 -638.94 -1.61 -24.41 16 5 C -0.35 -16.85 6.00 84.10 0.50 -16.34 16 6 H 0.10 4.47 6.54 -2.91 -0.02 4.45 16 7 C 0.01 0.32 5.23 84.96 0.44 0.77 16 8 N -0.89 -45.18 10.76 21.68 0.23 -44.95 16 9 Si 0.98 35.70 29.55 68.60 2.03 37.73 16 10 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 11 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 13 C 0.49 26.41 7.39 86.75 0.64 27.05 16 14 O -0.64 -38.21 16.30 -4.02 -0.07 -38.27 16 15 C -0.15 -6.74 5.51 -20.09 -0.11 -6.85 16 16 C -0.03 -1.02 7.84 22.54 0.18 -0.85 16 17 C -0.15 -4.34 9.69 22.23 0.22 -4.12 16 18 C 0.03 0.69 5.12 -19.80 -0.10 0.59 16 19 C -0.11 -1.84 5.26 29.85 0.16 -1.68 16 20 C -0.15 -2.96 9.36 71.98 0.67 -2.29 16 21 C -0.67 -20.72 5.59 22.23 0.12 -20.60 16 22 S 2.50 60.32 5.15 -56.49 -0.29 60.03 16 23 C -0.63 -6.62 10.42 113.37 1.18 -5.44 16 24 O -0.99 -33.37 16.74 -127.65 -2.14 -35.50 16 25 O -0.95 -25.10 13.83 -127.65 -1.77 -26.87 16 26 C 0.00 -0.01 9.06 22.54 0.20 0.19 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.12 6.11 5.16 -2.39 -0.01 6.10 16 33 H 0.03 1.53 7.25 -2.39 -0.02 1.51 16 34 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 35 H 0.15 6.28 5.44 -2.91 -0.02 6.27 16 36 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.09 1.07 3.73 -2.38 -0.01 1.06 16 39 H 0.06 1.46 6.17 -2.38 -0.01 1.44 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 42 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.16 0.91 6.00 -2.39 -0.01 0.90 16 45 H 0.12 5.40 7.14 -2.91 -0.02 5.38 16 Total: -1.00 -76.33 369.12 2.86 -73.47 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 1.01 Total: 31.91 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 5.46 Total: -33.12 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.38 Total: -69.36 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -3.97 Total: -100.64 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 16 Polarization: 60.32 SS G_CDS: -0.29 Total: 60.03 kcal Total: -76.33 2.86 -73.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125764904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.869 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds