Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81391 * 109.47235 * 239.99867 * 2 1 3 5 5 O 1.42104 * 110.54521 * 291.62885 * 4 2 1 6 6 O 1.42108 * 110.54484 * 68.37707 * 4 2 1 7 7 C 1.76198 * 104.45172 * 180.02562 * 4 2 1 8 8 C 1.38363 * 119.85225 * 269.72962 * 7 4 2 9 9 C 1.37959 * 120.14329 * 179.72279 * 8 7 4 10 10 C 1.39581 * 119.84792 * 0.54497 * 9 8 7 11 11 C 1.47851 * 120.14143 * 179.70226 * 10 9 8 12 12 O 1.21553 * 120.00132 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99921 * 0.02696 * 11 10 9 14 14 C 1.46497 * 120.00032 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47346 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47226 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46970 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99771 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99737 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.46966 * 59.99963 * 21 19 17 23 23 H 1.48503 * 109.46746 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46752 * 299.99936 * 21 19 17 25 25 C 1.39574 * 119.71754 * 359.73138 * 10 9 8 26 26 C 1.37961 * 119.84747 * 359.97438 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.07992 * 119.92831 * 359.97438 * 8 7 4 35 35 H 1.07993 * 120.07910 * 180.24838 * 9 8 7 36 36 H 0.97006 * 119.99848 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.46984 * 300.00032 * 14 13 11 38 38 H 1.09002 * 109.47107 * 59.99859 * 14 13 11 39 39 H 1.09005 * 109.46353 * 300.00050 * 15 14 13 40 40 H 1.08993 * 109.47187 * 59.99585 * 15 14 13 41 41 H 1.09002 * 109.46758 * 299.99183 * 16 15 14 42 42 H 1.08993 * 109.47609 * 59.99558 * 16 15 14 43 43 H 0.97005 * 119.99282 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.07688 * 179.97438 * 25 10 9 45 45 H 1.08003 * 119.92070 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 -1.4810 5 8 1.8386 -2.2432 -1.4113 6 8 1.8387 -0.1006 -2.6483 7 6 3.8900 -0.7787 -1.3471 8 6 4.5770 0.2877 -1.8995 9 6 5.9508 0.3565 -1.7932 10 6 6.6485 -0.6585 -1.1365 11 6 8.1214 -0.5946 -1.0246 12 8 8.7264 -1.4802 -0.4526 13 7 8.7932 0.4456 -1.5568 14 6 10.2525 0.5092 -1.4454 15 6 10.7612 1.7810 -2.1271 16 6 12.2853 1.8470 -2.0114 17 6 12.7863 3.0994 -2.6834 18 1 12.0875 3.7799 -3.1471 19 6 14.1367 3.3764 -2.7062 20 7 14.9876 2.5480 -2.1411 21 14 14.7578 4.9285 -3.5399 22 1 14.1588 6.1173 -2.8820 23 1 16.2371 4.9932 -3.4263 24 1 14.3713 4.9088 -4.9735 25 6 5.9498 -1.7343 -0.5865 26 6 4.5755 -1.7879 -0.6946 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.0364 1.0699 -2.4115 35 1 6.4857 1.1913 -2.2213 36 1 8.3103 1.1521 -2.0136 37 1 10.5363 0.5231 -0.3931 38 1 10.6922 -0.3633 -1.9288 39 1 10.4773 1.7674 -3.1795 40 1 10.3215 2.6531 -1.6435 41 1 12.5694 1.8604 -0.9591 42 1 12.7246 0.9748 -2.4953 43 1 15.9377 2.7428 -2.1576 44 1 6.4838 -2.5231 -0.0775 45 1 4.0337 -2.6200 -0.2697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -99.870633 kcal Electronic energy + Delta-G solvation = -26015.035624 eV Core-core repulsion = 22124.255242 eV Total energy + Delta-G solvation = -3890.780381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.44224 -38.62457 -37.59372 -36.38826 -35.64227 -35.60311 -33.52236 -32.24118 -31.57673 -30.91650 -28.02580 -26.99702 -24.77544 -23.37582 -23.19853 -22.63265 -20.94554 -20.31025 -19.39372 -18.53958 -17.63616 -17.10063 -16.65661 -16.29506 -15.89753 -15.50462 -15.27228 -15.22623 -14.77763 -14.48627 -14.28261 -14.15876 -14.05627 -13.88095 -13.78215 -13.22968 -13.13398 -12.95758 -12.52510 -12.42271 -12.33036 -12.09543 -12.05632 -11.94670 -11.83208 -11.68948 -11.39509 -10.92899 -10.83636 -10.79270 -10.67749 -10.16034 -9.94590 -9.80981 -9.53165 -9.48660 -9.19092 -8.96004 -8.41366 -6.05994 -4.09524 -0.49133 0.04099 0.82994 2.30857 2.45829 3.09329 3.26349 3.29090 3.34176 3.35941 3.48975 3.54413 3.89561 4.02053 4.29484 4.37364 4.40426 4.43563 4.50705 4.78996 4.83440 4.88079 4.97184 4.98980 5.11272 5.14543 5.29749 5.35624 5.42409 5.45560 5.53201 5.56382 5.64469 5.66533 5.83984 6.05029 6.25330 6.30986 6.49492 6.70090 6.90871 7.46761 7.57479 7.69386 7.91815 8.10907 8.32700 8.96680 9.54878 11.05135 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.001810 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.230517 B =15464.142375 C =16182.558565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.567 4.567 3 C -0.147 4.147 4 S 2.493 3.507 5 O -0.935 6.935 6 O -0.931 6.931 7 C -0.644 4.644 8 C -0.029 4.029 9 C -0.109 4.109 10 C -0.071 4.071 11 C 0.544 3.456 12 O -0.531 6.531 13 N -0.715 5.715 14 C 0.115 3.885 15 C -0.122 4.122 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.083 4.083 26 C -0.031 4.031 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.148 0.852 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.250 -4.672 5.571 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.677 4.677 3 C -0.205 4.205 4 S 2.673 3.327 5 O -0.932 6.932 6 O -0.928 6.928 7 C -0.731 4.731 8 C -0.048 4.048 9 C -0.129 4.129 10 C -0.074 4.074 11 C 0.329 3.671 12 O -0.409 6.409 13 N -0.366 5.366 14 C -0.008 4.008 15 C -0.160 4.160 16 C -0.014 4.014 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.103 4.103 26 C -0.050 4.050 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.166 0.834 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -31.022 -5.709 5.351 31.994 hybrid contribution 0.947 1.484 -0.046 1.760 sum -30.076 -4.226 5.304 30.831 Atomic orbital electron populations 1.21700 0.89626 1.04084 1.05110 1.30005 1.06811 1.10194 1.20732 1.21730 1.02095 0.91560 1.05076 1.05794 0.74402 0.75393 0.77132 1.93579 1.83259 1.29490 1.86902 1.93574 1.83142 1.73062 1.43032 1.30681 1.25924 1.03930 1.12540 1.20900 0.94450 0.95596 0.93852 1.21514 0.94513 0.98473 0.98367 1.20497 0.93841 0.95589 0.97506 1.18262 0.86586 0.82605 0.79603 1.90800 1.69458 1.38045 1.42578 1.46187 1.09512 1.23939 1.56985 1.21754 0.76671 1.00543 1.01789 1.21910 1.01029 0.93938 0.99087 1.19026 0.87252 0.97444 0.97636 1.21147 0.92087 1.06794 1.36247 0.92677 1.25033 0.97060 0.96835 0.95527 1.69954 1.02549 1.36521 1.44155 0.86628 0.77675 0.83497 0.80008 1.20245 1.21248 1.20224 1.21446 0.93735 0.97529 0.97558 1.20947 0.94521 0.95938 0.93604 0.90628 0.90712 0.89527 0.84106 0.90831 0.90237 0.89976 0.83379 0.84252 0.76585 0.91355 0.91342 0.92597 0.92615 0.96224 0.96211 0.92828 0.83450 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.20 37.16 0.34 -0.18 16 2 C -0.57 -2.35 3.44 -26.73 -0.09 -2.44 16 3 C -0.15 -0.54 8.97 37.16 0.33 -0.20 16 4 S 2.49 19.02 4.65 -107.50 -0.50 18.52 16 5 O -0.94 -9.76 17.11 -57.54 -0.98 -10.75 16 6 O -0.93 -9.43 16.99 -57.54 -0.98 -10.41 16 7 C -0.64 -5.31 5.06 -39.49 -0.20 -5.51 16 8 C -0.03 -0.23 8.53 -39.64 -0.34 -0.57 16 9 C -0.11 -0.96 9.54 -39.18 -0.37 -1.33 16 10 C -0.07 -0.80 5.87 -104.96 -0.62 -1.41 16 11 C 0.54 7.80 7.77 -12.32 -0.10 7.70 16 12 O -0.53 -9.55 16.35 5.32 0.09 -9.46 16 13 N -0.72 -9.68 5.51 -61.25 -0.34 -10.02 16 14 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 15 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 C -0.08 -0.85 9.60 -39.18 -0.38 -1.23 16 26 C -0.03 -0.27 9.45 -39.64 -0.37 -0.64 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.14 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.07 0.25 6.72 -51.93 -0.35 -0.10 16 32 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.15 0.88 7.55 -52.49 -0.40 0.48 16 35 H 0.14 0.91 6.40 -52.49 -0.34 0.57 16 36 H 0.40 4.18 6.51 -40.82 -0.27 3.92 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 44 H 0.15 1.48 7.65 -52.49 -0.40 1.08 16 45 H 0.15 0.97 7.56 -52.48 -0.40 0.57 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.44 388.79 -10.40 -46.85 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.76 Total: -2.00 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.50 Total: -19.06 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.40 Total: -35.72 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.88 Total: -30.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 19.02 SS G_CDS: -0.50 Total: 18.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.44 -10.40 -46.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds