Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81391 * 109.47235 * 239.99867 * 2 1 3 5 5 O 1.42104 * 110.54521 * 291.62885 * 4 2 1 6 6 O 1.42108 * 110.54484 * 68.37707 * 4 2 1 7 7 C 1.76198 * 104.45172 * 180.02562 * 4 2 1 8 8 C 1.38363 * 119.85225 * 269.72962 * 7 4 2 9 9 C 1.37959 * 120.14329 * 179.72279 * 8 7 4 10 10 C 1.39581 * 119.84792 * 0.54497 * 9 8 7 11 11 C 1.47851 * 120.14143 * 179.70226 * 10 9 8 12 12 O 1.21553 * 120.00132 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99921 * 0.02696 * 11 10 9 14 14 C 1.46497 * 120.00032 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47346 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47226 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46970 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99771 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99737 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.46966 * 59.99963 * 21 19 17 23 23 H 1.48503 * 109.46746 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46752 * 299.99936 * 21 19 17 25 25 C 1.39574 * 119.71754 * 359.73138 * 10 9 8 26 26 C 1.37961 * 119.84747 * 359.97438 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.07992 * 119.92831 * 359.97438 * 8 7 4 35 35 H 1.07993 * 120.07910 * 180.24838 * 9 8 7 36 36 H 0.97006 * 119.99848 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.46984 * 300.00032 * 14 13 11 38 38 H 1.09002 * 109.47107 * 59.99859 * 14 13 11 39 39 H 1.09005 * 109.46353 * 300.00050 * 15 14 13 40 40 H 1.08993 * 109.47187 * 59.99585 * 15 14 13 41 41 H 1.09002 * 109.46758 * 299.99183 * 16 15 14 42 42 H 1.08993 * 109.47609 * 59.99558 * 16 15 14 43 43 H 0.97005 * 119.99282 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.07688 * 179.97438 * 25 10 9 45 45 H 1.08003 * 119.92070 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 -1.4810 5 8 1.8386 -2.2432 -1.4113 6 8 1.8387 -0.1006 -2.6483 7 6 3.8900 -0.7787 -1.3471 8 6 4.5770 0.2877 -1.8995 9 6 5.9508 0.3565 -1.7932 10 6 6.6485 -0.6585 -1.1365 11 6 8.1214 -0.5946 -1.0246 12 8 8.7264 -1.4802 -0.4526 13 7 8.7932 0.4456 -1.5568 14 6 10.2525 0.5092 -1.4454 15 6 10.7612 1.7810 -2.1271 16 6 12.2853 1.8470 -2.0114 17 6 12.7863 3.0994 -2.6834 18 1 12.0875 3.7799 -3.1471 19 6 14.1367 3.3764 -2.7062 20 7 14.9876 2.5480 -2.1411 21 14 14.7578 4.9285 -3.5399 22 1 14.1588 6.1173 -2.8820 23 1 16.2371 4.9932 -3.4263 24 1 14.3713 4.9088 -4.9735 25 6 5.9498 -1.7343 -0.5865 26 6 4.5755 -1.7879 -0.6946 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.0364 1.0699 -2.4115 35 1 6.4857 1.1913 -2.2213 36 1 8.3103 1.1521 -2.0136 37 1 10.5363 0.5231 -0.3931 38 1 10.6922 -0.3633 -1.9288 39 1 10.4773 1.7674 -3.1795 40 1 10.3215 2.6531 -1.6435 41 1 12.5694 1.8604 -0.9591 42 1 12.7246 0.9748 -2.4953 43 1 15.9377 2.7428 -2.1576 44 1 6.4838 -2.5231 -0.0775 45 1 4.0337 -2.6200 -0.2697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171501503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = -125.382367 kcal Electronic energy + Delta-G solvation = -26016.141895 eV Core-core repulsion = 22124.255242 eV Total energy + Delta-G solvation = -3891.886653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42292 -39.55385 -38.26379 -37.08166 -37.05317 -35.95352 -35.30243 -33.52317 -32.43661 -32.11527 -28.75097 -28.22761 -25.96702 -24.56224 -23.88464 -23.36934 -22.38374 -21.59918 -20.00950 -19.33680 -18.58808 -18.36707 -17.70661 -17.30656 -16.81815 -16.76556 -16.47718 -16.04561 -15.83205 -15.53952 -15.38109 -15.24026 -14.68488 -14.35996 -14.26165 -14.15697 -14.08216 -13.92866 -13.78526 -13.50373 -13.24993 -13.18914 -13.07034 -12.72589 -12.58029 -12.47080 -12.37456 -12.33487 -12.32711 -12.08004 -11.69381 -11.65433 -11.31937 -11.25583 -11.04990 -10.60619 -10.54935 -10.21363 -10.18807 -8.19611 -6.31101 -1.06049 -0.71537 0.14463 1.42032 1.44805 1.46320 1.52627 1.78331 1.97554 2.42214 2.46239 2.87352 3.02640 3.14248 3.47365 3.55074 3.58347 3.74217 3.78222 4.10431 4.13942 4.17975 4.19320 4.25484 4.43262 4.52051 4.64024 4.68341 4.74953 4.79811 4.84364 4.87526 4.90461 4.91316 4.93860 5.09487 5.15711 5.16155 5.25355 5.30658 5.50920 5.58778 5.69532 5.83559 6.21213 6.38573 6.86213 7.01743 7.38527 8.92090 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.001810 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.230517 B =15464.142375 C =16182.558565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.539 4.539 3 C -0.157 4.157 4 S 2.490 3.510 5 O -0.970 6.970 6 O -0.961 6.961 7 C -0.640 4.640 8 C -0.031 4.031 9 C -0.102 4.102 10 C -0.091 4.091 11 C 0.545 3.455 12 O -0.576 6.576 13 N -0.704 5.704 14 C 0.128 3.872 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.266 1.266 25 C -0.093 4.093 26 C -0.034 4.034 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.165 0.835 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.416 0.584 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.072 0.928 41 H -0.007 1.007 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.761 -2.458 5.421 34.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.653 4.653 3 C -0.215 4.215 4 S 2.674 3.326 5 O -0.967 6.967 6 O -0.958 6.958 7 C -0.726 4.726 8 C -0.049 4.049 9 C -0.121 4.121 10 C -0.094 4.094 11 C 0.333 3.667 12 O -0.457 6.457 13 N -0.356 5.356 14 C 0.004 3.996 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.113 4.113 26 C -0.053 4.053 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.183 0.817 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.189 0.811 35 H 0.181 0.819 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -33.554 -3.490 5.146 34.125 hybrid contribution 1.613 0.787 0.059 1.796 sum -31.941 -2.703 5.206 32.475 Atomic orbital electron populations 1.21896 0.88888 1.04729 1.06276 1.29815 1.07214 1.10150 1.18112 1.21893 1.02522 0.90962 1.06090 1.05875 0.73829 0.74786 0.78145 1.93533 1.83449 1.31907 1.87845 1.93531 1.83235 1.73198 1.45827 1.30881 1.26479 1.03650 1.11556 1.21224 0.94215 0.96035 0.93450 1.21750 0.94925 0.98194 0.97252 1.20273 0.91710 0.97366 1.00030 1.18730 0.87925 0.81689 0.78385 1.90775 1.70685 1.39654 1.44589 1.45914 1.08051 1.24548 1.57049 1.21336 0.78696 0.99000 1.00557 1.21614 0.96686 0.95378 1.00362 1.18947 0.91486 0.95699 0.95383 1.21650 0.92657 1.07605 1.36023 0.91416 1.26029 0.97508 1.00392 0.96252 1.70108 1.02840 1.38733 1.45779 0.85470 0.76846 0.79305 0.79231 1.18953 1.21296 1.19079 1.21501 0.94523 0.97388 0.97847 1.21120 0.93819 0.96643 0.93669 0.90503 0.90485 0.87344 0.81686 0.90444 0.90034 0.88204 0.81073 0.81883 0.74505 0.92642 0.92894 0.91212 0.90979 0.98841 0.98982 0.92855 0.84112 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.20 71.98 0.66 -0.02 16 2 C -0.54 -2.88 3.44 30.60 0.11 -2.77 16 3 C -0.16 -0.62 8.97 71.98 0.65 0.03 16 4 S 2.49 34.26 4.65 -56.49 -0.26 34.00 16 5 O -0.97 -19.58 17.11 -127.65 -2.18 -21.76 16 6 O -0.96 -18.29 16.99 -127.65 -2.17 -20.45 16 7 C -0.64 -9.47 5.06 22.33 0.11 -9.36 16 8 C -0.03 -0.42 8.53 22.23 0.19 -0.23 16 9 C -0.10 -1.57 9.54 22.53 0.21 -1.35 16 10 C -0.09 -1.97 5.87 -20.09 -0.12 -2.08 16 11 C 0.55 15.64 7.77 86.79 0.67 16.32 16 12 O -0.58 -21.47 16.35 -3.88 -0.06 -21.53 16 13 N -0.70 -18.46 5.51 -465.96 -2.57 -21.02 16 14 C 0.13 4.32 5.67 86.38 0.49 4.81 16 15 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 16 C 0.02 1.15 4.97 29.85 0.15 1.29 16 17 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 18 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 21 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 C -0.09 -1.89 9.60 22.53 0.22 -1.68 16 26 C -0.03 -0.55 9.45 22.23 0.21 -0.34 16 27 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.17 0.15 8.14 -2.39 -0.02 0.14 16 31 H 0.08 0.27 6.72 -2.39 -0.02 0.25 16 32 H 0.08 0.32 8.11 -2.39 -0.02 0.30 16 33 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.17 1.51 7.55 -2.91 -0.02 1.49 16 35 H 0.16 1.60 6.40 -2.91 -0.02 1.58 16 36 H 0.42 7.81 6.51 -92.70 -0.60 7.20 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 44 H 0.14 2.97 7.65 -2.91 -0.02 2.94 16 45 H 0.16 2.00 7.56 -2.91 -0.02 1.97 16 Total: -1.00 -80.84 388.79 -0.13 -80.98 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.39 Total: 8.95 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.41 Total: -28.12 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.28 Total: -77.25 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -4.42 Total: -63.75 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 34.26 SS G_CDS: -0.26 Total: 34.00 kcal Total: -80.84 -0.13 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.405 kcal (2) G-P(sol) polarization free energy of solvation -80.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds