Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09007 * 109.47523 * 54.76798 * 3 2 1 5 5 C 1.53002 * 109.46898 * 174.76585 * 3 2 1 6 6 C 1.50703 * 109.46925 * 293.99305 * 5 3 2 7 7 O 1.21274 * 120.00135 * 353.87665 * 6 5 3 8 8 N 1.34785 * 119.99807 * 173.87351 * 6 5 3 9 9 S 1.65602 * 119.99971 * 180.02562 * 8 6 5 10 10 O 1.42102 * 104.27528 * 181.06960 * 9 8 6 11 11 O 1.42098 * 104.27304 * 308.92648 * 9 8 6 12 12 C 1.81397 * 104.45116 * 64.99587 * 9 8 6 13 13 C 1.52998 * 109.47215 * 180.02562 * 12 9 8 14 14 C 1.50696 * 109.47127 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00163 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46983 * 59.99898 * 18 16 14 20 20 H 1.48492 * 109.47156 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47033 * 299.99911 * 18 16 14 22 22 C 1.50700 * 109.47556 * 294.76402 * 3 2 1 23 23 C 1.38233 * 119.99764 * 299.73180 * 22 3 2 24 24 C 1.38240 * 119.99570 * 179.78323 * 23 22 3 25 25 C 1.38235 * 119.99820 * 0.44448 * 24 23 22 26 26 C 1.38231 * 120.00402 * 359.80597 * 25 24 23 27 27 C 1.38234 * 119.99630 * 120.00067 * 22 3 2 28 28 H 1.08993 * 109.47028 * 175.25190 * 1 2 3 29 29 H 1.09003 * 109.47207 * 55.24598 * 1 2 3 30 30 H 1.09000 * 109.47091 * 295.25267 * 1 2 3 31 31 H 1.08995 * 109.46833 * 119.99818 * 2 1 3 32 32 H 1.08999 * 109.46991 * 240.00500 * 2 1 3 33 33 H 1.09000 * 109.46896 * 53.99191 * 5 3 2 34 34 H 1.09001 * 109.47344 * 173.99685 * 5 3 2 35 35 H 0.97005 * 120.00028 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47220 * 300.00267 * 12 9 8 37 37 H 1.08998 * 109.46808 * 60.00274 * 12 9 8 38 38 H 1.09007 * 109.46847 * 299.99902 * 13 12 9 39 39 H 1.09001 * 109.46838 * 59.99904 * 13 12 9 40 40 H 0.97005 * 120.00099 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00342 * 359.97438 * 23 22 3 42 42 H 1.08003 * 119.99857 * 180.26857 * 24 23 22 43 43 H 1.08004 * 119.99423 * 179.83030 * 25 24 23 44 44 H 1.07999 * 120.00248 * 179.97438 * 26 25 24 45 45 H 1.07992 * 120.00742 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9828 0.8395 5 6 3.5643 1.4446 0.1316 6 6 3.9523 0.9072 1.4850 7 8 3.0962 0.6616 2.3082 8 7 5.2509 0.6996 1.7807 9 16 5.6773 0.1085 3.2677 10 8 7.0963 0.0462 3.2262 11 8 5.0078 0.9594 4.1880 12 6 4.9678 -1.5604 3.3119 13 6 5.2968 -2.2191 4.6530 14 6 4.7079 -3.6058 4.6895 15 1 4.1541 -3.9798 3.8411 16 6 4.8753 -4.3966 5.8064 17 7 5.5494 -3.9411 6.8397 18 14 4.1448 -6.1153 5.8519 19 1 4.7190 -6.9266 4.7485 20 1 4.4642 -6.7546 7.1536 21 1 2.6711 -6.0312 5.6895 22 6 1.6463 2.1146 -1.2901 23 6 2.0910 1.6081 -2.4970 24 6 1.7262 2.2220 -3.6807 25 6 0.9243 3.3477 -3.6568 26 6 0.4838 3.8572 -2.4497 27 6 0.8450 3.2408 -1.2662 28 1 -0.3633 -1.0241 -0.0851 29 1 -0.3634 0.5858 -0.8444 30 1 -0.3633 0.4384 0.9295 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.9970 0.8159 -0.6466 34 1 3.9369 2.4633 0.0247 35 1 5.9356 0.8957 1.1221 36 1 3.8860 -1.4986 3.1934 37 1 5.3887 -2.1556 2.5015 38 1 6.3786 -2.2809 4.7718 39 1 4.8756 -1.6237 5.4632 40 1 5.6675 -4.4977 7.6254 41 1 2.7209 0.7310 -2.5153 42 1 2.0701 1.8237 -4.6238 43 1 0.6415 3.8289 -4.5815 44 1 -0.1424 4.7369 -2.4311 45 1 0.5008 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181285103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -111.056111 kcal Electronic energy + Delta-G solvation = -27127.530911 eV Core-core repulsion = 23236.265491 eV Total energy + Delta-G solvation = -3891.265420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60364 -39.46950 -36.72723 -35.93401 -35.60723 -34.45533 -33.89738 -31.20172 -31.19828 -31.11512 -30.08221 -25.66520 -25.28124 -23.20501 -22.55983 -21.91950 -21.56074 -20.06847 -19.29307 -17.99138 -17.64504 -16.92829 -16.53948 -16.00716 -15.69805 -15.32620 -15.06121 -15.02817 -14.70918 -14.57093 -14.53016 -13.75221 -13.67669 -13.50272 -13.30336 -12.97483 -12.75927 -12.54217 -12.36579 -12.04117 -11.80736 -11.73083 -11.64396 -11.61832 -11.37015 -11.21020 -11.07264 -11.01401 -10.98804 -10.80735 -10.67452 -10.42022 -10.36118 -10.13470 -9.70949 -9.19906 -9.19322 -8.97212 -8.49654 -6.12110 -4.17680 0.49756 1.06945 1.12024 2.08000 2.73319 3.28175 3.32783 3.34778 3.49678 3.96577 4.13896 4.34768 4.37346 4.55421 4.65031 4.69569 4.74209 4.75309 4.85734 4.95710 5.06457 5.16429 5.20500 5.23097 5.24711 5.33269 5.50406 5.59243 5.64142 5.69813 5.71525 5.78138 5.80632 6.00857 6.11585 6.18286 6.23673 6.25275 6.40731 6.45112 6.63565 6.72186 7.28010 7.34808 7.46819 7.80555 8.16563 8.84979 9.46797 10.98942 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.002676 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.141160 B =10460.798381 C =11613.627667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.040 4.040 4 H 0.094 0.906 5 C -0.137 4.137 6 C 0.532 3.468 7 O -0.485 6.485 8 N -1.060 6.060 9 S 2.565 3.435 10 O -0.956 6.956 11 O -0.938 6.938 12 C -0.575 4.575 13 C 0.030 3.970 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.069 4.069 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.428 0.572 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 13.788 -22.738 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.059 4.059 4 H 0.112 0.888 5 C -0.178 4.178 6 C 0.319 3.681 7 O -0.356 6.356 8 N -0.822 5.822 9 S 2.665 3.335 10 O -0.946 6.946 11 O -0.929 6.929 12 C -0.710 4.710 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.263 0.737 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.280 14.107 -21.315 26.576 hybrid contribution -0.234 -1.225 -0.678 1.420 sum -7.514 12.882 -21.993 26.572 Atomic orbital electron populations 1.21718 0.95469 1.01587 1.01795 1.21712 0.96747 0.94679 1.02901 1.20086 0.92933 0.97595 0.95269 0.88784 1.21906 0.97918 1.03829 0.94170 1.20641 0.81150 0.75893 0.90449 1.90902 1.48216 1.47325 1.49160 1.55457 1.15106 1.73748 1.37839 1.06712 0.74850 0.79199 0.72735 1.93589 1.28329 1.88079 1.84645 1.93596 1.75737 1.64076 1.59446 1.30334 1.12848 1.16947 1.10845 1.18980 0.98352 0.97008 0.86571 1.20930 1.35134 0.98082 1.01744 0.92028 1.25064 0.95135 0.98838 0.95425 1.69946 1.40110 1.37410 1.05375 0.86509 0.79643 0.83640 0.77365 1.20085 1.21063 1.20017 1.19809 0.97282 0.95294 0.94536 1.21029 1.00366 1.00006 0.91938 1.21141 0.98364 0.96110 0.98074 1.21143 0.98601 0.96852 0.97908 1.21150 1.00021 0.99947 0.92561 1.21130 0.98195 0.95509 0.98406 0.92779 0.92943 0.92484 0.89995 0.92083 0.87880 0.87624 0.73700 0.85067 0.86095 0.94805 0.94598 0.92448 0.86014 0.86200 0.86356 0.86195 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.12 -1.22 5.11 -26.73 -0.14 -1.35 16 3 C -0.04 -0.36 1.68 -91.77 -0.15 -0.52 16 4 H 0.09 0.97 7.56 -51.92 -0.39 0.58 16 5 C -0.14 -1.11 4.89 -27.88 -0.14 -1.24 16 6 C 0.53 6.56 7.12 -10.98 -0.08 6.48 16 7 O -0.48 -7.88 12.41 -11.58 -0.14 -8.02 16 8 N -1.06 -12.76 5.60 31.22 0.17 -12.59 16 9 S 2.56 45.91 5.11 -107.50 -0.55 45.37 16 10 O -0.96 -18.81 18.08 -57.54 -1.04 -19.85 16 11 O -0.94 -20.39 17.04 -64.79 -1.10 -21.50 16 12 C -0.58 -11.25 5.82 37.16 0.22 -11.03 16 13 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.07 -0.57 3.70 -104.63 -0.39 -0.95 16 23 C -0.12 -0.86 8.71 -39.58 -0.34 -1.20 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.13 -0.89 10.05 -39.58 -0.40 -1.28 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 27 C -0.11 -0.92 9.67 -39.58 -0.38 -1.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 7.24 -51.93 -0.38 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.99 6.19 -51.93 -0.32 0.66 16 32 H 0.06 0.52 7.24 -51.93 -0.38 0.14 16 33 H 0.10 0.57 7.59 -51.93 -0.39 0.17 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.43 3.33 8.79 -34.47 -0.30 3.03 16 36 H 0.13 2.50 7.19 -51.92 -0.37 2.13 16 37 H 0.12 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 0.74 7.15 -52.49 -0.38 0.36 16 42 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 43 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.89 7.95 -52.49 -0.42 0.47 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -36.72 384.55 -10.61 -47.33 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.68 Total: 1.57 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.78 Total: -28.57 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.91 Total: -38.45 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.29 Total: -49.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.55 Total: 45.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.72 -10.61 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181285103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.731 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds