Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09007 * 109.47523 * 54.76798 * 3 2 1 5 5 C 1.53002 * 109.46898 * 174.76585 * 3 2 1 6 6 C 1.50703 * 109.46925 * 293.99305 * 5 3 2 7 7 O 1.21274 * 120.00135 * 353.87665 * 6 5 3 8 8 N 1.34785 * 119.99807 * 173.87351 * 6 5 3 9 9 S 1.65602 * 119.99971 * 180.02562 * 8 6 5 10 10 O 1.42102 * 104.27528 * 181.06960 * 9 8 6 11 11 O 1.42098 * 104.27304 * 308.92648 * 9 8 6 12 12 C 1.81397 * 104.45116 * 64.99587 * 9 8 6 13 13 C 1.52998 * 109.47215 * 180.02562 * 12 9 8 14 14 C 1.50696 * 109.47127 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00163 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46983 * 59.99898 * 18 16 14 20 20 H 1.48492 * 109.47156 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47033 * 299.99911 * 18 16 14 22 22 C 1.50700 * 109.47556 * 294.76402 * 3 2 1 23 23 C 1.38233 * 119.99764 * 299.73180 * 22 3 2 24 24 C 1.38240 * 119.99570 * 179.78323 * 23 22 3 25 25 C 1.38235 * 119.99820 * 0.44448 * 24 23 22 26 26 C 1.38231 * 120.00402 * 359.80597 * 25 24 23 27 27 C 1.38234 * 119.99630 * 120.00067 * 22 3 2 28 28 H 1.08993 * 109.47028 * 175.25190 * 1 2 3 29 29 H 1.09003 * 109.47207 * 55.24598 * 1 2 3 30 30 H 1.09000 * 109.47091 * 295.25267 * 1 2 3 31 31 H 1.08995 * 109.46833 * 119.99818 * 2 1 3 32 32 H 1.08999 * 109.46991 * 240.00500 * 2 1 3 33 33 H 1.09000 * 109.46896 * 53.99191 * 5 3 2 34 34 H 1.09001 * 109.47344 * 173.99685 * 5 3 2 35 35 H 0.97005 * 120.00028 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47220 * 300.00267 * 12 9 8 37 37 H 1.08998 * 109.46808 * 60.00274 * 12 9 8 38 38 H 1.09007 * 109.46847 * 299.99902 * 13 12 9 39 39 H 1.09001 * 109.46838 * 59.99904 * 13 12 9 40 40 H 0.97005 * 120.00099 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00342 * 359.97438 * 23 22 3 42 42 H 1.08003 * 119.99857 * 180.26857 * 24 23 22 43 43 H 1.08004 * 119.99423 * 179.83030 * 25 24 23 44 44 H 1.07999 * 120.00248 * 179.97438 * 26 25 24 45 45 H 1.07992 * 120.00742 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9828 0.8395 5 6 3.5643 1.4446 0.1316 6 6 3.9523 0.9072 1.4850 7 8 3.0962 0.6616 2.3082 8 7 5.2509 0.6996 1.7807 9 16 5.6773 0.1085 3.2677 10 8 7.0963 0.0462 3.2262 11 8 5.0078 0.9594 4.1880 12 6 4.9678 -1.5604 3.3119 13 6 5.2968 -2.2191 4.6530 14 6 4.7079 -3.6058 4.6895 15 1 4.1541 -3.9798 3.8411 16 6 4.8753 -4.3966 5.8064 17 7 5.5494 -3.9411 6.8397 18 14 4.1448 -6.1153 5.8519 19 1 4.7190 -6.9266 4.7485 20 1 4.4642 -6.7546 7.1536 21 1 2.6711 -6.0312 5.6895 22 6 1.6463 2.1146 -1.2901 23 6 2.0910 1.6081 -2.4970 24 6 1.7262 2.2220 -3.6807 25 6 0.9243 3.3477 -3.6568 26 6 0.4838 3.8572 -2.4497 27 6 0.8450 3.2408 -1.2662 28 1 -0.3633 -1.0241 -0.0851 29 1 -0.3634 0.5858 -0.8444 30 1 -0.3633 0.4384 0.9295 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.9970 0.8159 -0.6466 34 1 3.9369 2.4633 0.0247 35 1 5.9356 0.8957 1.1221 36 1 3.8860 -1.4986 3.1934 37 1 5.3887 -2.1556 2.5015 38 1 6.3786 -2.2809 4.7718 39 1 4.8756 -1.6237 5.4632 40 1 5.6675 -4.4977 7.6254 41 1 2.7209 0.7310 -2.5153 42 1 2.0701 1.8237 -4.6238 43 1 0.6415 3.8289 -4.5815 44 1 -0.1424 4.7369 -2.4311 45 1 0.5008 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181285103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -135.833050 kcal Electronic energy + Delta-G solvation = -27128.605320 eV Core-core repulsion = 23236.265491 eV Total energy + Delta-G solvation = -3892.339829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53174 -40.15504 -38.28945 -37.22098 -36.62682 -35.95877 -35.56535 -33.17996 -31.84077 -31.70772 -30.72424 -27.65284 -26.09458 -23.79887 -23.67650 -23.16434 -22.69782 -20.88869 -20.51933 -19.30217 -18.85638 -18.36532 -17.55109 -17.36971 -16.69305 -16.56573 -16.48551 -16.27285 -15.70891 -15.58690 -15.23920 -15.19298 -14.55144 -14.49589 -14.23137 -14.03740 -13.84854 -13.78683 -13.49933 -13.35940 -13.33800 -13.25060 -12.93465 -12.84927 -12.74905 -12.34735 -12.27583 -12.22796 -12.04736 -11.94711 -11.86919 -11.74722 -11.61705 -11.41802 -11.19080 -11.00123 -10.65325 -9.71915 -9.52446 -8.27598 -6.41703 -0.98483 0.52907 0.59932 1.06691 1.39617 1.43546 1.46776 1.51702 2.36523 2.58412 2.95330 3.04604 3.06040 3.28136 3.67166 3.83760 3.97636 4.01416 4.05703 4.16792 4.20363 4.25980 4.37254 4.39670 4.51758 4.58558 4.69237 4.71081 4.74300 4.81295 4.98936 5.04741 5.16514 5.22157 5.23297 5.25264 5.27778 5.39188 5.44235 5.65770 5.68413 5.73090 5.73341 5.83331 6.03323 6.21260 6.50708 6.70763 7.28158 8.84603 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.002676 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.141160 B =10460.798381 C =11613.627667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.037 4.037 4 H 0.073 0.927 5 C -0.128 4.128 6 C 0.530 3.470 7 O -0.526 6.526 8 N -1.037 6.037 9 S 2.598 3.402 10 O -0.974 6.974 11 O -0.981 6.981 12 C -0.578 4.578 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.075 0.925 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.975 3.025 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.075 4.075 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.130 4.130 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.451 0.549 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.014 0.986 39 H 0.003 0.997 40 H 0.268 0.732 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 13.481 -26.224 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.056 4.056 4 H 0.092 0.908 5 C -0.169 4.169 6 C 0.319 3.681 7 O -0.399 6.399 8 N -0.805 5.805 9 S 2.697 3.303 10 O -0.964 6.964 11 O -0.971 6.971 12 C -0.711 4.711 13 C -0.016 4.016 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.572 5.572 18 Si 0.798 3.202 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.075 4.075 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.291 0.709 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.032 0.968 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.479 13.796 -24.826 29.370 hybrid contribution -0.202 -1.028 0.318 1.095 sum -7.682 12.768 -24.508 28.682 Atomic orbital electron populations 1.21690 0.95783 1.01562 1.01317 1.21711 0.96565 0.95307 1.02562 1.19984 0.93490 0.96829 0.95279 0.90836 1.22040 0.97379 1.05669 0.91804 1.21533 0.80225 0.74762 0.91605 1.90906 1.49236 1.49094 1.50696 1.54879 1.16127 1.72993 1.36499 1.05377 0.73689 0.77869 0.73370 1.93559 1.29310 1.88028 1.85519 1.93544 1.76488 1.64802 1.62221 1.30226 1.13599 1.18931 1.08294 1.18814 0.96777 0.96863 0.89140 1.21442 1.35075 0.99087 1.02290 0.90731 1.26122 0.95471 1.03630 0.94974 1.70093 1.41697 1.39280 1.06177 0.85357 0.79033 0.78042 0.77792 1.18429 1.20808 1.19092 1.19695 0.97991 0.95503 0.94285 1.21235 1.00434 1.00463 0.91582 1.21435 0.98012 0.95952 0.98808 1.21441 0.98264 0.96953 0.98431 1.21365 1.00238 1.00442 0.92531 1.21257 0.98735 0.96013 0.98811 0.92726 0.92305 0.93875 0.92414 0.90136 0.84122 0.85130 0.70858 0.84708 0.83014 0.96758 0.97857 0.92315 0.84338 0.84310 0.84655 0.85000 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 71.98 0.71 -2.09 16 2 C -0.12 -2.30 5.11 30.60 0.16 -2.14 16 3 C -0.04 -0.61 1.68 -11.54 -0.02 -0.63 16 4 H 0.07 1.52 7.56 -2.38 -0.02 1.50 16 5 C -0.13 -1.68 4.89 29.85 0.15 -1.53 16 6 C 0.53 12.19 7.12 87.66 0.62 12.81 16 7 O -0.53 -17.11 12.41 13.38 0.17 -16.95 16 8 N -1.04 -22.94 5.60 -173.53 -0.97 -23.92 16 9 S 2.60 92.89 5.11 -56.49 -0.29 92.60 16 10 O -0.97 -37.94 18.08 -127.65 -2.31 -40.25 16 11 O -0.98 -43.72 17.04 -120.72 -2.06 -45.77 16 12 C -0.58 -22.68 5.82 71.98 0.42 -22.26 16 13 C 0.02 1.23 4.98 29.85 0.15 1.38 16 14 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 15 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 17 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 18 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.07 -1.07 3.70 -19.87 -0.07 -1.14 16 23 C -0.12 -1.38 8.71 22.27 0.19 -1.19 16 24 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 25 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 26 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 27 C -0.13 -1.94 9.67 22.27 0.22 -1.73 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.03 7.24 -2.39 -0.02 1.02 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.37 6.19 -2.39 -0.01 1.35 16 32 H 0.08 1.15 7.24 -2.39 -0.02 1.13 16 33 H 0.14 0.85 7.59 -2.39 -0.02 0.84 16 34 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.45 5.56 8.79 -96.74 -0.85 4.71 16 36 H 0.13 5.20 7.19 -2.39 -0.02 5.18 16 37 H 0.15 4.89 8.14 -2.39 -0.02 4.87 16 38 H 0.01 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 41 H 0.14 1.07 7.15 -2.91 -0.02 1.05 16 42 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 43 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16 45 H 0.12 1.74 7.95 -2.91 -0.02 1.71 16 Total: -1.00 -82.57 384.55 0.88 -81.69 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.14 Total: 16.15 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 3.88 Total: -52.33 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -0.69 Total: -80.98 kcal Atomic # 8 Polarization: -98.77 SS G_CDS: -4.20 Total: -102.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 92.89 SS G_CDS: -0.29 Total: 92.60 kcal Total: -82.57 0.88 -81.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181285103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.143 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds